How the truffle got its mate: insights from genetic structure in spontaneous and planted Mediterranean populations of Tuber melanosporum.

Abstract:

:The life cycles and dispersal of edible fungi are still poorly known, thus limiting our understanding of their evolution and domestication. The prized Tuber melanosporum produces fruitbodies (fleshy organs where meiospores mature) gathered in natural, spontaneously inoculated forests or harvested in plantations of nursery-inoculated trees. Yet, how fruitbodies are formed remains unclear, thus limiting yields, and how current domestication attempts affect population genetic structure is overlooked. Fruitbodies result from mating between two haploid individuals: the maternal parent forms the flesh and the meiospores, while the paternal parent only contributes to the meiospores. We analyzed the genetic diversity of T. melanosporum comparatively in spontaneous forests vs. plantations, using SSR polymorphism of 950 samples from South-East France. All populations displayed strong genetic isolation by distance at the metric scale, possibly due to animal dispersal, meiospore persistence in soil, and/or exclusion of unrelated individuals by vegetative incompatibility. High inbreeding was consistently found, suggesting that parents often develop from meiospores produced by the same fruitbody. Unlike maternal genotypes, paternal mycelia contributed to few fruitbodies each, did not persist over years, and were undetectable on tree mycorrhizae. Thus, we postulate that germlings from the soil spore bank act as paternal partners. Paternal genetic diversity and outbreeding were higher in plantations than in spontaneous truffle-grounds, perhaps because truffle growers disperse fruitbodies to maintain inoculation in plantations. However, planted and spontaneous populations were not genetically isolated, so that T. melanosporum illustrates an early step of domestication where genetic structure remains little affected.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Taschen E,Rousset F,Sauve M,Benoit L,Dubois MP,Richard F,Selosse MA

doi

10.1111/mec.13864

subject

Has Abstract

pub_date

2016-11-01 00:00:00

pages

5611-5627

issue

22

eissn

0962-1083

issn

1365-294X

journal_volume

25

pub_type

杂志文章
  • Reconciling patterns of genetic variation with stream structure, earth history and biology in the Australian freshwater fish Craterocephalus stercusmuscarum (Atherinidae).

    abstract::We examined the consequences of barriers, stream architecture and putative dispersal capability on levels of genetic differentiation among populations of the freshwater fish Craterocephalus stercusmuscarum. Seven polymorphic allozyme loci and sequences of a 498-bp fragment of the ATPase 6 mitochondrial DNA (mtDNA) gen...

    journal_title:Molecular ecology

    pub_type: 历史文章,杂志文章

    doi:10.1046/j.1365-294x.2000.01054.x

    authors: McGlashan DJ,Hughes JM

    更新日期:2000-11-01 00:00:00

  • Do escaped transgenes persist in nature? The case of an herbicide resistance transgene in a weedy Brassica rapa population.

    abstract::The existence of transgenic hybrids resulting from transgene escape from genetically modified (GM) crops to wild or weedy relatives is well documented but the fate of the transgene over time in recipient wild species populations is still relatively unknown. This is the first report of the persistence and apparent intr...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03567.x

    authors: Warwick SI,Légère A,Simard MJ,James T

    更新日期:2008-03-01 00:00:00

  • Are the native giant tortoises from the Seychelles really extinct? A genetic perspective based on mtDNA and microsatellite data.

    abstract::The extinction of the giant tortoises of the Seychelles Archipelago has long been suspected but is not beyond doubt. A recent morphological study of the giant tortoises of the western Indian Ocean concluded that specimens of two native Seychelles species survive in captivity today alongside giant tortoises of Aldabra,...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01834.x

    authors: Palkovacs EP,Marschner M,Ciofi C,Gerlach J,Caccone A

    更新日期:2003-06-01 00:00:00

  • ddRAD-seq data reveal significant genome-wide population structure and divergent genomic regions that distinguish the mallard and close relatives in North America.

    abstract::Recently evolved species typically share genetic variation across their genomes due to incomplete lineage sorting and/or ongoing gene flow. Given only subtle allele frequency differences at most loci and the expectation that divergent selection may affect only a tiny fraction of the genome, distinguishing closely rela...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15091

    authors: Lavretsky P,DaCosta JM,Sorenson MD,McCracken KG,Peters JL

    更新日期:2019-05-01 00:00:00

  • Cryptic invasions of the crab Carcinus detected by molecular phylogeography.

    abstract::Coastal marine ecosystems world-wide are threatened by invasions of nonindigenous species. The ubiquity of marine sibling species identifiable only by genetic analysis suggests that many invasions are cryptic and therefore undetected, causing an underestimation of the actual number and impacts of invading species. We ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1997.00256.x

    authors: Geller JB,Walton ED,Grosholz ED,Ruiz GM

    更新日期:1997-10-01 00:00:00

  • Rates of gut microbiome divergence in mammals.

    abstract::The variation and taxonomic diversity among mammalian gut microbiomes raises several questions about the factors that contribute to the rates and patterns of change in these microbial communities. By comparing the microbiome compositions of 112 species representing 14 mammalian orders, we assessed how host and ecologi...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14473

    authors: Nishida AH,Ochman H

    更新日期:2018-04-01 00:00:00

  • Hybridization at an ecotone: ecological and genetic barriers between three Iberian vipers.

    abstract::The formation of stable genetic boundaries between emerging species is often diagnosed by reduced hybrid fitness relative to parental taxa. This reduced fitness can arise from endogenous and/or exogenous barriers to gene flow. Although detecting exogenous barriers in nature is difficult, we can estimate the role of ec...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12671

    authors: Tarroso P,Pereira RJ,Martínez-Freiría F,Godinho R,Brito JC

    更新日期:2014-03-01 00:00:00

  • Recent changes in phenotype and patterns of host specialization in Wolbachia bacteria.

    abstract::Wolbachia are a genus of bacterial symbionts that are known to manipulate the reproduction of their arthropod hosts, both by distorting the host sex ratio and by inducing cytoplasmic incompatibility. Previous work has suggested that some Wolbachia clades specialize in particular host taxa, but others are diverse. Furt...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01532.x

    authors: Jiggins FM,Bentley JK,Majerus ME,Hurst GD

    更新日期:2002-08-01 00:00:00

  • Major histocompatibility complex heterozygosity enhances reproductive success.

    abstract::We investigated how heterozygosity at the major histocompatibility complex (MHC) affects fitness in wild-derived (F2) house mice (Mus musculus musculus). To compare and control for potential confounding effects from close inbreeding and genome-wide heterozygosity, we used mice that were systematically outbred. We asse...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05009.x

    authors: Thoss M,Ilmonen P,Musolf K,Penn DJ

    更新日期:2011-04-01 00:00:00

  • Social chromosome variants differentially affect queen determination and the survival of workers in the fire ant Solenopsis invicta.

    abstract::Intraspecific variation in social organization is common, yet the underlying causes are rarely known. An exception is the fire ant Solenopsis invicta in which the existence of two distinct forms of social colony organization is under the control of the two variants of a pair of social chromosomes, SB and Sb. Colonies ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12915

    authors: Buechel SD,Wurm Y,Keller L

    更新日期:2014-10-01 00:00:00

  • Selection at behavioural, developmental and metabolic genes is associated with the northward expansion of a successful tropical colonizer.

    abstract::What makes a species able to colonize novel environments? This question is key to understand the dynamics of adaptive radiations and ecological niche shifts, but the mechanisms that underlie expansion into novel habitats remain poorly understood at a genomic scale. Lizards from the genus Anolis are typically tropical,...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15162

    authors: Bourgeois Y,Boissinot S

    更新日期:2019-08-01 00:00:00

  • Low host specificity of root-associated fungi at an Arctic site.

    abstract::In High Arctic ecosystems, plant growth and reproduction are limited by low soil moisture and nutrient availability, low soil and air temperatures, and a short growing season. Mycorrhizal associations facilitate plant nutrient acquisition and water uptake and may therefore be particularly ecologically important in nut...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12646

    authors: Botnen S,Vik U,Carlsen T,Eidesen PB,Davey ML,Kauserud H

    更新日期:2014-02-01 00:00:00

  • Population subdivision and gene flow in Danish house mice.

    abstract::Genetic subdivision in local populations of the European house mice, Mus musculus domesticus and M. m. musculus, was analysed to study patterns of gene flow. The data consisted of frequencies of microsatellite alleles in 16 samples (250 individuals) from a total of 11 sites in Jutland, which included successive sample...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294x.1995.tb00224.x

    authors: Dallas JF,Dod B,Boursot P,Prager EM,Bonhomme F

    更新日期:1995-06-01 00:00:00

  • Incorporating latitudinal and central-marginal trends in assessing genetic variation across species ranges.

    abstract::The genetic variation across a species' range is an important factor in speciation and conservation, yet searching for general patterns and underlying causes remains challenging. While the majority of comparisons between central and marginal populations have revealed a general central-marginal (C-M) decline in genetic...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12012

    authors: Guo Q

    更新日期:2012-11-01 00:00:00

  • All roads lead to weediness: Patterns of genomic divergence reveal extensive recurrent weedy rice origins from South Asian Oryza.

    abstract::Weedy rice (Oryza spp.), a weedy relative of cultivated rice (O. sativa), infests and persists in cultivated rice fields worldwide. Many weedy rice populations have evolved similar adaptive traits, considered part of the 'agricultural weed syndrome', making this an ideal model to study the genetic basis of parallel ev...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14120

    authors: Huang Z,Young ND,Reagon M,Hyma KE,Olsen KM,Jia Y,Caicedo AL

    更新日期:2017-06-01 00:00:00

  • Molecular evidence of the survival of subterranean amphipods (Arthropoda) during Ice Age underneath glaciers in Iceland.

    abstract::A Two endemic groundwater arthropod crustacean species, Crangonyx islandicus and Crymostygius thingvallensis, were recently discovered on the mid-Atlantic volcanic island of Iceland. The extent of morphological differences from closest relatives, endemism, along with the geographic isolation of Iceland and its complet...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04663.x

    authors: Kornobis E,Pálsson S,Kristjánsson BK,Svavarsson J

    更新日期:2010-06-01 00:00:00

  • Assessment of genetic structure within and among Bulgarian populations of the common ash (Fraxinus excelsior L.).

    abstract::We analysed genetic variation within and between populations of the common ash from Bulgaria in order to extract biological information useful in the context of conservation management of eastern European genetic resources of noble hardwood species. A total of 321 trees from three regions of Bulgaria were typed at six...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2001.01300.x

    authors: Heuertz M,Hausman JF,Tsvetkov I,Frascaria-Lacoste N,Vekemans X

    更新日期:2001-07-01 00:00:00

  • Nonadditive changes to cytosine methylation as a consequence of hybridization and genome duplication in Senecio (Asteraceae).

    abstract::The merger of two or more divergent genomes within an allopolyploid nucleus can facilitate speciation and adaptive evolution in flowering plants. Widespread changes to gene expression have been shown to result from interspecific hybridisation and polyploidy in a number of plant species, and attention has now shifted t...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04926.x

    authors: Hegarty MJ,Batstone T,Barker GL,Edwards KJ,Abbott RJ,Hiscock SJ

    更新日期:2011-01-01 00:00:00

  • Comparative genetic analyses of historical and contemporary collections highlight contrasting demographic histories for the bumble bees Bombus pensylvanicus and B. impatiens in Illinois.

    abstract::Direct comparison of genetic patterns between museum specimens and contemporary collections can be a powerful approach for detecting recent demographic changes. Using microsatellite markers, we examined historical and contemporary genetic variation from an apparently declining bumble bee species, Bombus pensylvanicus,...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04160.x

    authors: Lozier JD,Cameron SA

    更新日期:2009-05-01 00:00:00

  • Comparative phylogeography and postglacial colonization routes in Europe.

    abstract::The Quaternary cold periods in Europe are thought to have heavily influenced the amount and distribution of intraspecific genetic variation in both animals and plants. The phylogeographies of 10 taxa, including mammals (Ursus arctos, Sorex spp., Crocidura suaveolens, Arvicola spp.), amphibians (Triturus spp.), arthrop...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1998.00289.x

    authors: Taberlet P,Fumagalli L,Wust-Saucy AG,Cosson JF

    更新日期:1998-04-01 00:00:00

  • Genome-wide patterns of divergence and gene flow across a butterfly radiation.

    abstract::The Heliconius butterflies are a diverse recent radiation comprising multiple levels of divergence with ongoing gene flow between species. The recently sequenced genome of Heliconius melpomene allowed us to investigate the genomic evolution of this group using dense RAD marker sequencing. Phylogenetic analysis of 54 i...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2012.05730.x

    authors: Nadeau NJ,Martin SH,Kozak KM,Salazar C,Dasmahapatra KK,Davey JW,Baxter SW,Blaxter ML,Mallet J,Jiggins CD

    更新日期:2013-02-01 00:00:00

  • Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing.

    abstract::This paper describes how ground water was sampled, DNA extracted, amplified and cloned and how information available in the ribosomal 16S rRNA gene was used for mapping diversity and distribution of subterranean bacteria in groundwater at the Bangombé site in the Oklo region. The results showed that this site was inha...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294x.1996.tb00332.x

    authors: Pedersen K,Arlinger J,Hallbeck L,Pettersson C

    更新日期:1996-06-01 00:00:00

  • Population structure and phylogeography of Solanum pimpinellifolium inferred from a nuclear gene.

    abstract::Phylogeographical studies are emerging as a powerful tool for understanding the population structure and evolution of wild relatives of crop species. Because of their value as genetic resources, there is great interest in exploring the distribution of variation in wild relatives of cultivated plants. In this study, we...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02191.x

    authors: Caicedo AL,Schaal BA

    更新日期:2004-07-01 00:00:00

  • Mating structure and nestmate relatedness in a communal bee, Andrena jacobi (Hymenoptera, Andrenidae), using microsatellites.

    abstract::Complex eusocial insect societies are generally matrifilial, suggesting kin selection has been of importance in their development. For simpler social systems, factors favouring their existence, in particular kin selection, have rarely been studied. Communal nesting is one of these simple social organizations, and is f...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294x.1996.tb00343.x

    authors: Paxton RJ,Thorén PA,Tengö J,Estoup A,Pamilo P

    更新日期:1996-08-01 00:00:00

  • Divergence, gene flow, and speciation in eight lineages of trans-Beringian birds.

    abstract::Determining how genetic diversity is structured between populations that span the divergence continuum from populations to biological species is key to understanding the generation and maintenance of biodiversity. We investigated genetic divergence and gene flow in eight lineages of birds with a trans-Beringian distri...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15574

    authors: McLaughlin JF,Faircloth BC,Glenn TC,Winker K

    更新日期:2020-09-01 00:00:00

  • Indirect genetic estimates of breeding population size in the polyploid green sturgeon (Acipenser medirostris).

    abstract::The utility of genetic measures for kinship reconstruction in polysomic species is not well evaluated. We developed a framework to test hypotheses about estimating breeding population size indirectly from collections of outmigrating green sturgeon juveniles. We evaluated a polysomic dataset, in allelic frequency and p...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04533.x

    authors: Israel JA,May B

    更新日期:2010-03-01 00:00:00

  • Soft selective sweep near a gene that increases plant height in wheat.

    abstract::Strong selection within a given population locally reduces genetic variability not only in the selected gene itself but also in neighbouring loci. This so-called hitch-hiking effect is related to the initial linkage disequilibrium between markers and the selected gene, and depends mainly on the number of copies of the...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03620.x

    authors: Raquin AL,Brabant P,Rhoné B,Balfourier F,Leroy P,Goldringer I

    更新日期:2008-02-01 00:00:00

  • Host use evolution in Chrysochus milkweed beetles: evidence from behaviour, population genetics and phylogeny.

    abstract::In two sister species of leaf beetles with overlapping host associations, Chrysochus auratus and C. cobaltinus, we established diet breadth and food preference of local populations for evaluation together with genetic differentiation between populations. While C. auratus turned out to be monophagous on the same plant ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1999.00693.x

    authors: Dobler S,Farrell BD

    更新日期:1999-08-01 00:00:00

  • Rapid genetic adaptation precedes the spread of an exotic plant species.

    abstract::Human activities have increasingly introduced plant species far outside their native ranges under environmental conditions that can strongly differ from those originally met. Therefore, before spreading, and potentially causing ecological and economical damage, non-native species may rapidly evolve. Evidence of geneti...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12683

    authors: Vandepitte K,de Meyer T,Helsen K,van Acker K,Roldán-Ruiz I,Mergeay J,Honnay O

    更新日期:2014-05-01 00:00:00

  • High MHC gene copy number maintains diversity despite homozygosity in a Critically Endangered single-island endemic bird, but no evidence of MHC-based mate choice.

    abstract::Small population sizes can, over time, put species at risk due to the loss of genetic variation and the deleterious effects of inbreeding. Losing diversity in the major histocompatibility complex (MHC) could be particularly harmful, given its key role in the immune system. Here, we assess MHC class I (MHC-I) diversity...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15471

    authors: Stervander M,Dierickx EG,Thorley J,Brooke ML,Westerdahl H

    更新日期:2020-05-16 00:00:00