Statistical methods for multivariate meta-analysis of diagnostic tests: An overview and tutorial.

Abstract:

:In this article, we present an overview and tutorial of statistical methods for meta-analysis of diagnostic tests under two scenarios: (1) when the reference test can be considered a gold standard and (2) when the reference test cannot be considered a gold standard. In the first scenario, we first review the conventional summary receiver operating characteristics approach and a bivariate approach using linear mixed models. Both approaches require direct calculations of study-specific sensitivities and specificities. We next discuss the hierarchical summary receiver operating characteristics curve approach for jointly modeling positivity criteria and accuracy parameters, and the bivariate generalized linear mixed models for jointly modeling sensitivities and specificities. We further discuss the trivariate generalized linear mixed models for jointly modeling prevalence, sensitivities and specificities, which allows us to assess the correlations among the three parameters. These approaches are based on the exact binomial distribution and thus do not require an ad hoc continuity correction. Lastly, we discuss a latent class random effects model for meta-analysis of diagnostic tests when the reference test itself is imperfect for the second scenario. A number of case studies with detailed annotated SAS code in MIXED and NLMIXED procedures are presented to facilitate the implementation of these approaches.

journal_name

Stat Methods Med Res

authors

Ma X,Nie L,Cole SR,Chu H

doi

10.1177/0962280213492588

subject

Has Abstract

pub_date

2016-08-01 00:00:00

pages

1596-619

issue

4

eissn

0962-2802

issn

1477-0334

pii

0962280213492588

journal_volume

25

pub_type

杂志文章,评审
  • A composite likelihood approach to predict the sex of the baby.

    abstract::Couples with diseases associated with the sexual chromosomes, as well as families in countries where the desire for a male is extreme, are interested in influencing the sex of the baby. We propose an original composite likelihood approach to analyse the relation between sex of the newborn and timing of the intercourse...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280217702415

    authors: Tiberi S,Scarpa B,Sartori N

    更新日期:2018-11-01 00:00:00

  • Predicting brain activity using a Bayesian spatial model.

    abstract::Increasing the clinical applicability of functional neuroimaging technology is an emerging objective, e.g. for diagnostic and treatment purposes. We propose a novel Bayesian spatial hierarchical framework for predicting follow-up neural activity based on an individual's baseline functional neuroimaging data. Our appro...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280212448972

    authors: Derado G,Bowman FD,Zhang L,Alzheimer's Disease Neuroimaging Initiative Investigators.

    更新日期:2013-08-01 00:00:00

  • Hybrid test for publication bias in meta-analysis.

    abstract::Publication bias frequently appears in meta-analyses when the included studies' results (e.g., p-values) influence the studies' publication processes. Some unfavorable studies may be suppressed from publication, so the meta-analytic results may be biased toward an artificially favorable direction. Many statistical tes...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280220910172

    authors: Lin L

    更新日期:2020-10-01 00:00:00

  • Inferring the direction of a causal link and estimating its effect via a Bayesian Mendelian randomization approach.

    abstract::The use of genetic variants as instrumental variables - an approach known as Mendelian randomization - is a popular epidemiological method for estimating the causal effect of an exposure (phenotype, biomarker, risk factor) on a disease or health-related outcome from observational data. Instrumental variables must sati...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280219851817

    authors: Bucur IG,Claassen T,Heskes T

    更新日期:2020-04-01 00:00:00

  • The impact of covariance misspecification in group-based trajectory models for longitudinal data with non-stationary covariance structure.

    abstract::One purpose of a longitudinal study is to gain a better understanding of how an outcome of interest changes among a given population over time. In what follows, a trajectory will be taken to mean the series of measurements of the outcome variable for an individual. Group-based trajectory modelling methods seek to iden...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280215598806

    authors: Davies CE,Glonek GF,Giles LC

    更新日期:2017-08-01 00:00:00

  • Shared parameter models for joint analysis of longitudinal and survival data with left truncation due to delayed entry - Applications to cystic fibrosis.

    abstract::Many longitudinal studies observe time to occurrence of a clinical event such as death, while also collecting serial measurements of one or more biomarkers that are predictive of the event, or are surrogate outcomes of interest. Joint modeling can be used to examine the relationship between the biomarker and the event...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280218764193

    authors: Schluchter MD,Piccorelli AV

    更新日期:2019-05-01 00:00:00

  • Joint latent class models for longitudinal and time-to-event data: a review.

    abstract::Most statistical developments in the joint modelling area have focused on the shared random-effect models that include characteristics of the longitudinal marker as predictors in the model for the time-to-event. A less well-known approach is the joint latent class model which consists in assuming that a latent class s...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章,评审

    doi:10.1177/0962280212445839

    authors: Proust-Lima C,Séne M,Taylor JM,Jacqmin-Gadda H

    更新日期:2014-02-01 00:00:00

  • Flexible Bayesian P-splines for smoothing age-specific spatio-temporal mortality patterns.

    abstract::In this paper age-space-time models based on one and two-dimensional P-splines with B-spline bases are proposed for smoothing mortality rates, where both fixed relative scale and scale invariant two-dimensional penalties are examined. Model fitting and inference are carried out using integrated nested Laplace approxim...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280217726802

    authors: Goicoa T,Adin A,Etxeberria J,Militino AF,Ugarte MD

    更新日期:2019-02-01 00:00:00

  • Change-point detection for infinite horizon dynamic treatment regimes.

    abstract::A dynamic treatment regime is a set of decision rules for how to treat a patient at multiple time points. At each time point, a treatment decision is made depending on the patient's medical history up to that point. We consider the infinite-horizon setting in which the number of decision points is very large. Specific...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280217708655

    authors: Goldberg Y,Pollak M,Mitelpunkt A,Orlovsky M,Weiss-Meilik A,Gorfine M

    更新日期:2017-08-01 00:00:00

  • Statistical methods in computational anatomy.

    abstract::This paper reviews recent developments by the Washington/Brown groups for the study of anatomical shape in the emerging new discipline of computational anatomy. Parametric representations of anatomical variation for computational anatomy are reviewed, restricted to the assumption of small deformations. The generation ...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章,评审

    doi:10.1177/096228029700600305

    authors: Miller M,Banerjee A,Christensen G,Joshi S,Khaneja N,Grenander U,Matejic L

    更新日期:1997-09-01 00:00:00

  • A corrected formulation for marginal inference derived from two-part mixed models for longitudinal semi-continuous data.

    abstract::For semi-continuous data which are a mixture of true zeros and continuously distributed positive values, the use of two-part mixed models provides a convenient modelling framework. However, deriving population-averaged (marginal) effects from such models is not always straightforward. Su et al. presented a model that ...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280213509798

    authors: Tom BD,Su L,Farewell VT

    更新日期:2016-10-01 00:00:00

  • Model selection in multivariate semiparametric regression.

    abstract::Variable selection in semiparametric mixed models for longitudinal data remains a challenge, especially in the presence of multiple correlated outcomes. In this paper, we propose a model selection procedure that simultaneously selects fixed and random effects using a maximum penalized likelihood method with the adapti...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280217690769

    authors: Li Z,Liu H,Tu W

    更新日期:2018-10-01 00:00:00

  • A monotone data augmentation algorithm for longitudinal data analysis via multivariate skew-t, skew-normal or t distributions.

    abstract::The mixed effects model for repeated measures has been widely used for the analysis of longitudinal clinical data collected at a number of fixed time points. We propose a robust extension of the mixed effects model for repeated measures for skewed and heavy-tailed data on basis of the multivariate skew-t distribution,...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280219865579

    authors: Tang Y

    更新日期:2020-06-01 00:00:00

  • Bayesian sample size calculation for estimation of the difference between two binomial proportions.

    abstract::In this study, we discuss a decision theoretic or fully Bayesian approach to the sample size question in clinical trials with binary responses. Data are assumed to come from two binomial distributions. A Dirichlet distribution is assumed to describe prior knowledge of the two success probabilities p1 and p2. The param...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280211399562

    authors: Pezeshk H,Nematollahi N,Maroufy V,Marriott P,Gittins J

    更新日期:2013-12-01 00:00:00

  • Advanced colorectal neoplasia risk stratification by penalized logistic regression.

    abstract::Colorectal cancer is the second leading cause of death from cancer in the United States. To facilitate the efficiency of colorectal cancer screening, there is a need to stratify risk for colorectal cancer among the 90% of US residents who are considered "average risk." In this article, we investigate such risk stratif...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280213497432

    authors: Lin Y,Yu M,Wang S,Chappell R,Imperiale TF

    更新日期:2016-08-01 00:00:00

  • Inferences about population means of health care costs.

    abstract::The analysis of health care costs is complicated by the skewed and heteroscedastic nature of their distribution with possibly additional zero values. Statistical methods that do not adjust for these features can lead to incorrect conclusions. This paper reviews recent developments in statistical methods for the analys...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章,评审

    doi:10.1191/0962280202sm290ra

    authors: Zhou XH

    更新日期:2002-08-01 00:00:00

  • Correcting for dependent censoring in routine outcome monitoring data by applying the inverse probability censoring weighted estimator.

    abstract::Censored data make survival analysis more complicated because exact event times are not observed. Statistical methodology developed to account for censored observations assumes that patients' withdrawal from a study is independent of the event of interest. However, in practice, some covariates might be associated to b...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280216628900

    authors: Willems S,Schat A,van Noorden MS,Fiocco M

    更新日期:2018-02-01 00:00:00

  • Estimating marginal and incremental effects in the analysis of medical expenditure panel data using marginalized two-part random-effects generalized Gamma models: Evidence from China healthcare cost data.

    abstract::Conditional two-part random-effects models have been proposed for the analysis of healthcare cost panel data that contain both zero costs from the non-users of healthcare facilities and positive costs from the users. These models have been extended to accommodate more flexible data structures when using the generalize...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280217690770

    authors: Zhang B,Liu W,Hu Y

    更新日期:2018-10-01 00:00:00

  • A comparative review of methods for comparing means using partially paired data.

    abstract::In medical experiments with the objective of testing the equality of two means, data are often partially paired by design or because of missing data. The partially paired data represent a combination of paired and unpaired observations. In this article, we review and compare nine methods for analyzing partially paired...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章,评审

    doi:10.1177/0962280215577111

    authors: Guo B,Yuan Y

    更新日期:2017-06-01 00:00:00

  • Survival forests for data with dependent censoring.

    abstract::Tree-based methods are very powerful and popular tools for analysing survival data with right-censoring. The existing methods assume that the true time-to-event and the censoring times are independent given the covariates. We propose different ways to build survival forests when dependent censoring is suspected, by us...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280217727314

    authors: Moradian H,Larocque D,Bellavance F

    更新日期:2019-02-01 00:00:00

  • Forensic inference from genetic markers.

    abstract::This review provides an overview of forensic inference from genetic markers. Because the judge and jurors are charged with decision-making, the forensic expert's job is to provide a useful summary of the evidence to the court. Hence, this review focuses on the likelihood ratio as a means of summarizing the genetic dat...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章,评审

    doi:10.1177/096228029300200304

    authors: Devlin B

    更新日期:1993-01-01 00:00:00

  • Quantile residual lifetime regression with functional principal component analysis of longitudinal data for dynamic prediction.

    abstract::Optimal therapeutic decisions can be made according to disease prognosis, where the residual lifetime is extensively used because of its straightforward interpretation and formula. To predict the residual lifetime in a dynamic manner, a longitudinal biomarker that is repeatedly measured during the post-baseline follow...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280217753466

    authors: Lin X,Li R,Yan F,Lu T,Huang X

    更新日期:2019-04-01 00:00:00

  • Inferential tools in penalized logistic regression for small and sparse data: A comparative study.

    abstract::This paper focuses on inferential tools in the logistic regression model fitted by the Firth penalized likelihood. In this context, the Likelihood Ratio statistic is often reported to be the preferred choice as compared to the 'traditional' Wald statistic. In this work, we consider and discuss a wider range of test st...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280216661213

    authors: Siino M,Fasola S,Muggeo VM

    更新日期:2018-05-01 00:00:00

  • Fitting competing risks with an assumed copula.

    abstract::We propose a fully parametric model for the analysis of competing risks data where the types of failure may not be independent. We show how the dependence between the cause-specific survival times can be modelled with a copula function. Features include: identifiability of the problem; accessible understanding of the ...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1191/0962280203sm335ra

    authors: Escarela G,Carrière JF

    更新日期:2003-08-01 00:00:00

  • Estimation of half-life periods in nonlinear data with fractional polynomials.

    abstract::Regression models are frequently used to model the functional relationship between an interesting outcome parameter and one or more potentially relevant explanatory variables. Objectives can be to set up as a prognostic model, for example, or an estimation model for a certain parameter of interest. Determining half-li...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280213502403

    authors: Mayer B,Keller F,Syrovets T,Wittau M

    更新日期:2016-10-01 00:00:00

  • A kernel-based spatio-temporal surveillance system for monitoring influenza-like illness incidence.

    abstract::The threat of pandemics has made influenza surveillance systems a priority in epidemiology services around the world. The emergence of A-H1N1 influenza has required accurate surveillance systems in order to undertake specific actions only when and where they are necessary. In that sense, the main goal of this article ...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280210370265

    authors: Martinez-Beneito MA,Botella-Rocamora P,Zurriaga O

    更新日期:2011-04-01 00:00:00

  • Bayesian variable selection in the accelerated failure time model with an application to the surveillance, epidemiology, and end results breast cancer data.

    abstract::Accelerated failure time model is a popular model to analyze censored time-to-event data. Analysis of this model without assuming any parametric distribution for the model error is challenging, and the model complexity is enhanced in the presence of large number of covariates. We developed a nonparametric Bayesian met...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280215626947

    authors: Zhang Z,Sinha S,Maiti T,Shipp E

    更新日期:2018-04-01 00:00:00

  • Fitting mechanistic epidemic models to data: A comparison of simple Markov chain Monte Carlo approaches.

    abstract::Simple mechanistic epidemic models are widely used for forecasting and parameter estimation of infectious diseases based on noisy case reporting data. Despite the widespread application of models to emerging infectious diseases, we know little about the comparative performance of standard computational-statistical fra...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280217747054

    authors: Li M,Dushoff J,Bolker BM

    更新日期:2018-07-01 00:00:00

  • Joint modelling for organ transplantation outcomes for patients with diabetes and the end-stage renal disease.

    abstract::This article is motivated by jointly modelling longitudinal and time-to-event clinical data of patients with diabetes and end-stage renal disease. All patients are on the waiting list for the pancreas transplant after kidney transplant, and some of them have a pancreas transplant before kidney transplant failure or de...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280218786980

    authors: Dong JJ,Wang S,Wang L,Gill J,Cao J

    更新日期:2019-09-01 00:00:00

  • Relative efficiency of unequal cluster sizes for variance component estimation in cluster randomized and multicentre trials.

    abstract::Cluster randomized and multicentre trials evaluate the effect of a treatment on persons nested within clusters, for instance patients within clinics or pupils within schools. Although equal sample sizes per cluster are generally optimal for parameter estimation, they are rarely feasible. This paper addresses the relat...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280206079018

    authors: van Breukelen GJ,Candel MJ,Berger MP

    更新日期:2008-08-01 00:00:00