Model selection in multivariate semiparametric regression.

Abstract:

:Variable selection in semiparametric mixed models for longitudinal data remains a challenge, especially in the presence of multiple correlated outcomes. In this paper, we propose a model selection procedure that simultaneously selects fixed and random effects using a maximum penalized likelihood method with the adaptive least absolute shrinkage and selection operator penalty. Through random effects selection, we determine the correlation structure among multiple outcomes and therefore address whether a joint model is necessary. Additionally, we include a bivariate nonparametric component, as approximated by tensor product splines, to accommodate the joint nonlinear effects of two independent variables. We use an adaptive group least absolute shrinkage and selection operator to determine whether the bivariate nonparametric component can be reduced to additive components. To implement the selection and estimation method, we develop a two-stage expectation-maximization procedure. The operating characteristics of the proposed method are assessed through simulation studies. Finally, the method is illustrated in a clinical study of blood pressure development in children.

journal_name

Stat Methods Med Res

authors

Li Z,Liu H,Tu W

doi

10.1177/0962280217690769

subject

Has Abstract

pub_date

2018-10-01 00:00:00

pages

3026-3038

issue

10

eissn

0962-2802

issn

1477-0334

journal_volume

27

pub_type

杂志文章
  • Adaptive non-inferiority margins under observable non-constancy.

    abstract::A central assumption in the design and conduct of non-inferiority trials is that the active-control therapy will have the same degree of effectiveness in the planned non-inferiority trial as in the prior placebo-controlled trials used to define the non-inferiority margin. This is referred to as the 'constancy' assumpt...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280218801134

    authors: Hanscom B,Hughes JP,Williamson BD,Donnell D

    更新日期:2019-10-01 00:00:00

  • Interval estimation of a population mean using existing knowledge or data on effect sizes.

    abstract::Bayes or empirical Bayes methods to improve inferential accuracy for a population mean has been widely adopted in medical research. As the joint prior distribution of both the mean and variance parameters can be difficult to specify or estimate, most of these methods have relied on certain level of simplifications of ...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280218773537

    authors: Shen C

    更新日期:2019-06-01 00:00:00

  • A new diagnostic accuracy measure and cut-point selection criterion.

    abstract::Most diagnostic accuracy measures and criteria for selecting optimal cut-points are only applicable to diseases with binary or three stages. Currently, there exist two diagnostic measures for diseases with general k stages: the hypervolume under the manifold and the generalized Youden index. While hypervolume under th...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280215611631

    authors: Dong T,Attwood K,Hutson A,Liu S,Tian L

    更新日期:2017-12-01 00:00:00

  • Stratified and randomized play-the-winner rule.

    abstract::In this paper, a new allocation rule for treatment assignments in sequential clinical trials is proposed. The stratified and randomized play-the-winner rule (SRPWR) is an extension of the randomized play-the-winner rule to more than two treatments. It is applicable to cases where the probabilities of success of a trea...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280207081606

    authors: Liang Y,Carriere KC

    更新日期:2008-12-01 00:00:00

  • Promoting structural effects of covariates in the cure rate model with penalization.

    abstract::Cure rate models have been widely adopted for characterizing survival data that have long-term survivors. Under a mixture cure rate model where the population is a mixture of cured and susceptible subjects, a primary goal is to study covariate effects on the cure probability and survival function of the susceptible su...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280217708684

    authors: Fan X,Liu M,Fang K,Huang Y,Ma S

    更新日期:2017-10-01 00:00:00

  • armDNA: A functional beta model for detecting age-related genomewide DNA methylation marks.

    abstract::DNA methylation has been shown to play an important role in many complex diseases. The rapid development of high-throughput DNA methylation scan technologies provides great opportunities for genomewide DNA methylation-disease association studies. As methylation is a dynamic process involving time, it is quite plausibl...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280216683571

    authors: Wang C,Shen Q,Du L,Xu J,Zhang H

    更新日期:2018-09-01 00:00:00

  • Continuous(ly) missing outcome data in network meta-analysis: A one-stage pattern-mixture model approach.

    abstract::Appropriate handling of aggregate missing outcome data is necessary to minimise bias in the conclusions of systematic reviews. The two-stage pattern-mixture model has been already proposed to address aggregate missing continuous outcome data. While this approach is more proper compared with the exclusion of missing co...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280220983544

    authors: Spineli LM,Kalyvas C,Papadimitropoulou K

    更新日期:2021-01-06 00:00:00

  • Relative efficiency of unequal cluster sizes for variance component estimation in cluster randomized and multicentre trials.

    abstract::Cluster randomized and multicentre trials evaluate the effect of a treatment on persons nested within clusters, for instance patients within clinics or pupils within schools. Although equal sample sizes per cluster are generally optimal for parameter estimation, they are rarely feasible. This paper addresses the relat...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280206079018

    authors: van Breukelen GJ,Candel MJ,Berger MP

    更新日期:2008-08-01 00:00:00

  • A frequentist approach to estimating the force of infection for a respiratory disease using repeated measurement data from a birth cohort.

    abstract::This article aims to develop a probability-based model involving the use of direct likelihood formulation and generalised linear modelling (GLM) approaches useful in estimating important disease parameters from longitudinal or repeated measurement data. The current application is based on infection with respiratory sy...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280210385749

    authors: Mwambi H,Ramroop S,White Lj,Okiro E,Nokes Dj,Shkedy Z,Molenberghs G

    更新日期:2011-10-01 00:00:00

  • Nonparametric estimation of risk tracking indices for longitudinal studies.

    abstract::Tracking a subject's risk factors or health status over time is an important objective in long-term epidemiological studies with repeated measurements. An important issue of time-trend tracking is to define appropriate statistical indices to quantitatively measure the tracking abilities of the targeted risk factors or...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280219839427

    authors: Wu CO,Tian X,Tian L,Reis JP,Zhao L,Allen NB,Bae S,Liu K

    更新日期:2020-02-01 00:00:00

  • Assessing the reliability of ordered categorical scales using kappa-type statistics.

    abstract::Methods for the analysis of reliability of ordered categorical scales are discussed, focussing on the limitation of the single summary-weighted kappa coefficients. A symmetric matrix of kappa-type coefficients is suggested as an alternative. The method is proposed as being suitable for ordinal scale where there is no ...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1191/0962280205sm413oa

    authors: Roberts C,McNamee R

    更新日期:2005-10-01 00:00:00

  • Maximum likelihood estimation based on Newton-Raphson iteration for the bivariate random effects model in test accuracy meta-analysis.

    abstract::A bivariate generalised linear mixed model is often used for meta-analysis of test accuracy studies. The model is complex and requires five parameters to be estimated. As there is no closed form for the likelihood function for the model, maximum likelihood estimates for the parameters have to be obtained numerically. ...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280219853602

    authors: Willis BH,Baragilly M,Coomar D

    更新日期:2020-04-01 00:00:00

  • Measuring agreement in method comparison studies.

    abstract::Agreement between two methods of clinical measurement can be quantified using the differences between observations made using the two methods on the same subjects. The 95% limits of agreement, estimated by mean difference +/- 1.96 standard deviation of the differences, provide an interval within which 95% of differenc...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章,评审

    doi:10.1177/096228029900800204

    authors: Bland JM,Altman DG

    更新日期:1999-06-01 00:00:00

  • Testing for association in case-control genome-wide association studies with shared controls.

    abstract::The statistical analysis of genome-wide association studies (GWASs) with multiple diseases and shared controls (SCs) is discussed. The usual method for analyzing data from these studies is to compare each individual disease with either the SCs or the pooled controls which include other diseases. We observed that apply...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280212474061

    authors: Chen Z,Huang H,Ng HK

    更新日期:2016-04-01 00:00:00

  • Statistical methods for multivariate meta-analysis of diagnostic tests: An overview and tutorial.

    abstract::In this article, we present an overview and tutorial of statistical methods for meta-analysis of diagnostic tests under two scenarios: (1) when the reference test can be considered a gold standard and (2) when the reference test cannot be considered a gold standard. In the first scenario, we first review the conventio...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章,评审

    doi:10.1177/0962280213492588

    authors: Ma X,Nie L,Cole SR,Chu H

    更新日期:2016-08-01 00:00:00

  • A non-parametric model to address overdispersed count response in a longitudinal data setting with missingness.

    abstract::Count responses are becoming increasingly important in biostatistical analysis because of the development of new biomedical techniques such as next-generation sequencing and digital polymerase chain reaction; a commonly met problem in modeling them with the popular Poisson model is overdispersion. Although it has been...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280215583397

    authors: Zhang H,He H,Lu N,Zhu L,Zhang B,Zhang Z,Tang L

    更新日期:2017-06-01 00:00:00

  • Semiparametric models for multilevel overdispersed count data with extra zeros.

    abstract::This study proposes semiparametric models for analysis of hierarchical count data containing excess zeros and overdispersion simultaneously. The methods discussed in this paper handle nonlinear covariate effects through flexible semiparametric multilevel regression techniques. This is performed by providing a comprehe...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280216657376

    authors: Mahmoodi M,Moghimbeigi A,Mohammad K,Faradmal J

    更新日期:2018-04-01 00:00:00

  • Practical issues arising in an exploratory analysis evaluating progression-free survival as a surrogate endpoint for overall survival in advanced colorectal cancer.

    abstract::This paper is based on a conference presentation in which several authors presented results from analyses of the same dataset concerning the evaluation of progression-free survival (PFS) as a surrogate endpoint for overall survival in advanced colorectal cancer clinical trials. In evaluating a potential surrogate endp...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280207081860

    authors: Hughes MD

    更新日期:2008-10-01 00:00:00

  • On the power of the Cochran-Armitage test for trend in the presence of misclassification.

    abstract::The Cochran-Armitage (CA) test is commonly used in both epidemiology and genetics to test for linear trend in two-way tables with a binary outcome. There has been increasing interest in the power and size of the test and in determination of sample size, especially when there is potential misclassification in the 'expo...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280211406424

    authors: Buonaccorsi JP,Laake P,Veierød MB

    更新日期:2014-06-01 00:00:00

  • Causal mediation analysis with multiple causally non-ordered mediators.

    abstract::In many health studies, researchers are interested in estimating the treatment effects on the outcome around and through an intermediate variable. Such causal mediation analyses aim to understand the mechanisms that explain the treatment effect. Although multiple mediators are often involved in real studies, most of t...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280215615899

    authors: Taguri M,Featherstone J,Cheng J

    更新日期:2018-01-01 00:00:00

  • A multiphase non-linear mixed effects model: An application to spirometry after lung transplantation.

    abstract::In medical sciences, we often encounter longitudinal temporal relationships that are non-linear in nature. The influence of risk factors may also change across longitudinal follow-up. A system of multiphase non-linear mixed effects model is presented to model temporal patterns of longitudinal continuous measurements, ...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280214537255

    authors: Rajeswaran J,Blackstone EH

    更新日期:2017-02-01 00:00:00

  • Inferences about a linear combination of proportions.

    abstract::Statistical methods for carrying out asymptotic inferences (tests or confidence intervals) relative to one or two independent binomial proportions are very frequent. However, inferences about a linear combination of K independent proportions L = Σβ(i)p(i) (in which the first two are special cases) have had very little...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280209347953

    authors: Martín Andrés A,Alvarez Hernández M,Herranz Tejedor I

    更新日期:2011-08-01 00:00:00

  • Individualized dynamic prediction of prostate cancer recurrence with and without the initiation of a second treatment: Development and validation.

    abstract::With the emergence of rich information on biomarkers after treatments, new types of prognostic tools are being developed: dynamic prognostic tools that can be updated at each new biomarker measurement. Such predictions are of interest in oncology where after an initial treatment, patients are monitored with repeated b...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280214535763

    authors: Sène M,Taylor JM,Dignam JJ,Jacqmin-Gadda H,Proust-Lima C

    更新日期:2016-12-01 00:00:00

  • Copas-like selection model to correct publication bias in systematic review of diagnostic test studies.

    abstract::The accuracy of a diagnostic test, which is often quantified by a pair of measures such as sensitivity and specificity, is critical for medical decision making. Separate studies of an investigational diagnostic test can be combined through meta-analysis; however, such an analysis can be threatened by publication bias....

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280218791602

    authors: Piao J,Liu Y,Chen Y,Ning J

    更新日期:2019-10-01 00:00:00

  • Analysis of phase II methodologies for single-arm clinical trials with multiple endpoints in rare cancers: An example in Ewing's sarcoma.

    abstract::Trials run in either rare diseases, such as rare cancers, or rare sub-populations of common diseases are challenging in terms of identifying, recruiting and treating sufficient patients in a sensible period. Treatments for rare diseases are often designed for other disease areas and then later proposed as possible tre...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280216662070

    authors: Dutton P,Love SB,Billingham L,Hassan AB

    更新日期:2018-05-01 00:00:00

  • Accurate quantification of uncertainty in epidemic parameter estimates and predictions using stochastic compartmental models.

    abstract::Stochastic transmission dynamic models are needed to quantify the uncertainty in estimates and predictions during outbreaks of infectious diseases. We previously developed a calibration method for stochastic epidemic compartmental models, called Multiple Shooting for Stochastic Systems (MSS), and demonstrated its comp...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280218805780

    authors: Zimmer C,Leuba SI,Cohen T,Yaesoubi R

    更新日期:2019-12-01 00:00:00

  • A Bayesian semiparametric approach with change points for spatial ordinal data.

    abstract::The change-point model has drawn much attention over the past few decades. It can accommodate the jump process, which allows for changes of the effects before and after the change point. Intellectual disability is a long-term disability that impacts performance in cognitive aspects of life and usually has its onset pr...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280212463415

    authors: Cai B,Lawson AB,McDermott S,Aelion CM

    更新日期:2016-04-01 00:00:00

  • Bayesian latent structure modeling of walking behavior in a physical activity intervention.

    abstract::The analysis of walking behavior in a physical activity intervention is considered. A Bayesian latent structure modeling approach is proposed whereby the ability and willingness of participants is modeled via latent effects. The dropout process is jointly modeled via a linked survival model. Computational issues are a...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280214529932

    authors: Lawson AB,Ellerbe C,Carroll R,Alia K,Coulon S,Wilson DK,VanHorn ML,George SM

    更新日期:2016-12-01 00:00:00

  • Comparing cluster-level dynamic treatment regimens using sequential, multiple assignment, randomized trials: Regression estimation and sample size considerations.

    abstract::Cluster-level dynamic treatment regimens can be used to guide sequential treatment decision-making at the cluster level in order to improve outcomes at the individual or patient-level. In a cluster-level dynamic treatment regimen, the treatment is potentially adapted and re-adapted over time based on changes in the cl...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280217708654

    authors: NeCamp T,Kilbourne A,Almirall D

    更新日期:2017-08-01 00:00:00

  • Small sample sizes: A big data problem in high-dimensional data analysis.

    abstract::In many experiments and especially in translational and preclinical research, sample sizes are (very) small. In addition, data designs are often high dimensional, i.e. more dependent than independent replications of the trial are observed. The present paper discusses the applicability of max t-test-type statistics (mu...

    journal_title:Statistical methods in medical research

    pub_type: 杂志文章

    doi:10.1177/0962280220970228

    authors: Konietschke F,Schwab K,Pauly M

    更新日期:2020-11-24 00:00:00