Abstract:
:Hepatitis B viruses (HBVs) replicate by reverse transcription of an RNA intermediate. Packaging of this RNA pregenome into nucleocapsids and replication initiation depend crucially on the interaction of the reverse transcriptase, P protein, with the cis-acting, 5' end-proximal encapsidation signal epsilon. The overall secondary structure is similar in all of the hepadnaviral epsilon signals, with a lower and an upper stem, separated by a bulge, and an apical loop. However, while epsilon is almost perfectly conserved in all mammalian viruses, the epsilon signals of duck HBV (DHBV) and heron HBV (D epsilon and H epsilon, respectively) differ substantially in their upper stem regions, both in primary sequence and in secondary structure; nonetheless, H epsilon interacts productively with DHBV P protein, as shown by its ability to stimulate priming, i.e., the covalent attachment of a deoxynucleoside monophosphate to the protein. In this study, we extensively mutated the variable and the conserved positions in the upper stem of D epsilon and correlated the functional activities of the variant RNAs in a priming assay with secondary structure and physical P protein binding. These data revealed a proper overall structure, with the bulge and certain key residues, e.g., in the loop, being important constraints in protein binding. Many mutations at the evolutionarily variable positions complied with these criteria and yielded priming-competent RNAs. However, most mutants at the conserved positions outside the loop were defective in priming even though they had epsilon-like structures and bound to P protein; conversely, one point mutant in the loop with an apical structure different from those of D epsilon and H epsilon was priming competent. These results suggest that P protein binding can induce differently structured epsilon RNAs to adopt a new, common conformation, and they support an induced-fit model of the epsilon-P interaction in which both components undergo extensive structural alterations during formation of a priming-competent ribonucleoprotein complex.
journal_name
J Viroljournal_title
Journal of virologyauthors
Beck J,Nassal Mdoi
10.1128/JVI.71.7.4971-4980.1997subject
Has Abstractpub_date
1997-07-01 00:00:00pages
4971-80issue
7eissn
0022-538Xissn
1098-5514journal_volume
71pub_type
杂志文章abstract::We previously described a preleukemic state induced by Moloney murine leukemia virus (Mo-MuLV) characterized by hematopoietic hyperplasia in the spleen. Further experiments suggested that splenic hyperplasia results from inhibitory effects in the bone marrow, leading to compensatory extramedullary hematopoiesis. An en...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.65.8.4442-4448.1991
更新日期:1991-08-01 00:00:00
abstract::HIV-1 infectivity is strongly restricted by TRIM5α from certain primate species but has been described as being only marginally susceptible to human TRIM5α. In this study, we evaluated the effects of the modulation of human TRIM5α activity (pretreatment of target cells with alpha interferon, expression of a pre-miRNA ...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.00758-10
更新日期:2010-11-01 00:00:00
abstract::Previous studies have shown that serum interferon (IFN) production in mice is quantitatively influenced by If loci, whose alleles determine high or low production. Although different loci influence IFN production in response to different inducers, such as Newcastle disease virus, Sendai virus, herpes simplex virus typ...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.58.3.743-747.1986
更新日期:1986-06-01 00:00:00
abstract::Injection of conventional or axenic weanling mice with potent sheep or goat antibody to mouse interferon alpha/beta resulted in a decrease in the basal level of 2-5A synthetase in resting peritoneal macrophages and rendered these cells permissive for vesicular stomatitis virus. There was a good inverse correlation bet...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.53.1.221-227.1985
更新日期:1985-01-01 00:00:00
abstract::The relationship between the vaccinia virus hemagglutinin and hemadsorption was examined. Hemagglutinin synthesis was temporally related to the appearance of the hemadsorption reaction. Only chicken erythrocytes, which reacted with hemagglutinin, hemadsorbed to infected cells, and both of these reactions were inhibite...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.9.2.290-296.1972
更新日期:1972-02-01 00:00:00
abstract::Cells nonproductively transformed by a variant of the Snyder-Theilen strain of feline sarcoma virus (FeSV) expressed an 85,000-dalton polyprotein (P85) with associated tyrosine-specific protein kinase activity. We identified within this polyprotein a single tyrosine acceptor site for its enzyme activity. This acceptor...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.38.3.886-894.1981
更新日期:1981-06-01 00:00:00
abstract::We molecularly cloned unintegrated viral DNA of the BALB/c endogenous N-tropic and B-tropic murine leukemia retroviruses and in vitro passaged N-tropic Gross (passage A) murine leukemia retroviruses. Recombinant genomes were constructed in vitro by exchanging homologous restriction enzyme fragments from N- or B-tropic...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.48.1.110-119.1983
更新日期:1983-10-01 00:00:00
abstract::The potential use of the modified vaccinia virus Ankara (MVA) strain as a live recombinant vector to deliver antigens and elicit protective immune responses against infectious diseases demands a comprehensive understanding of the effect of MVA infection on human host gene expression. We used microarrays containing mor...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.78.11.5820-5834.2004
更新日期:2004-06-01 00:00:00
abstract::The sequences of several hundred nucleotides around the junctions between the L and S components in concatemeric DNA and in mature virion DNA were ascertained. The two ends of the mature genome (which are joined in concatemeric DNA) show no sequence homology. Several directly repeated elements are present near both en...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.64.10.4968-4977.1990
更新日期:1990-10-01 00:00:00
abstract::Interleukin-1 (IL-1) plays an important role in the inflammatory process. Some studies have demonstrated that IL-1 production was impaired in patients with chronic infections of hepatitis C virus (HCV), implying that IL-1 may play a role in viral clearance. Using an HCV subgenomic replicon cell line, we demonstrate th...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/jvi.77.9.5493-5498.2003
更新日期:2003-05-01 00:00:00
abstract::CD81 has been described as a putative receptor for hepatitis C virus (HCV); however, its role in HCV cell entry has not been characterized due to the lack of an efficient cell culture system. We have examined the role of CD81 in HCV glycoprotein-dependent entry by using a recently developed retroviral pseudotyping sys...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/jvi.78.3.1448-1455.2004
更新日期:2004-02-01 00:00:00
abstract::Rubella virus contains three structural proteins, capsid, E2, and E1. E2 and E1 are type I membrane glycoproteins that form a heterodimer in the endoplasmic reticulum (ER) before they are transported to and retained in the Golgi complex, where virus assembly occurs. The bulk of unassembled E2 and E1 subunits are not t...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.71.10.7670-7680.1997
更新日期:1997-10-01 00:00:00
abstract:UNLABELLED:The live attenuated measles virus vaccine is highly immunostimulatory. Identification and characterization of its components that activate the innate immune response might provide new strategies and agents for the rational design and development of chemically defined adjuvants. In this study, we report on th...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.02161-15
更新日期:2015-11-25 00:00:00
abstract::The E5 oncoprotein of bovine papillomavirus type 1 is a 44-amino-acid, hydrophobic polypeptide which localizes predominantly in Golgi membranes and appears to transform cells through the activation of tyrosine kinase growth factor receptors. In fibroblasts, E5 interacts with both the 16-kilodalton vacuolar ATPase subu...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.70.4.2420-2430.1996
更新日期:1996-04-01 00:00:00
abstract::The poliovirus polyprotein is cotranslationally linked to myristic acid at its amino-terminal glycine residue. We investigated the role of myristoylation in the viral replication cycle by site-directed mutagenesis of this glycine codon. Synthetic full-length RNA transcripts carrying a Gly-to-Ala mutation (G4002A) gave...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.64.5.2433-2436.1990
更新日期:1990-05-01 00:00:00
abstract::We have been studying defective interfering (DI) genomes of the RNA enveloped virus Sindbis virus. Deletion mapping of a DI cDNA demonstrated that only sequences at the 3' and 5' termini of the genome are required for the DI RNA to be biologically active. We constructed a series of cDNAs that transcribe DI RNAs differ...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.62.1.47-53.1988
更新日期:1988-01-01 00:00:00
abstract::It is not yet clear to what extent depletion of intracellular GTP pools contributes to the antiviral activity of ribavirin. Therefore, the antiviral activities of (i) ribavirin, (ii) its 5-ethynyl analogue, 5-ethynyl-1-beta-D-ribofuranosylimidazole-4-carboxamide (EICAR), and (iii) mycophenolic acid (MPA) (a compound t...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.79.3.1943-1947.2005
更新日期:2005-02-01 00:00:00
abstract::The effect DNA repair might have on the integration of exogenous proviral DNA into host cell DNA was investigated by comparing the efficiency of proviral DNA integration in normal chicken embryonic fibroblasts and in chicken embryonic fibroblasts treated with UV or 4-nitroquinoline-1-oxide. The cells were treated with...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.23.3.533-542.1977
更新日期:1977-09-01 00:00:00
abstract::Enviroxime is an antienterovirus compound that targets viral protein 3A and/or 3AB and suppresses a step in enterovirus replication by unknown mechanism. To date, four antienterovirus compounds, i.e., GW5074, Flt3 inhibitor II, TTP-8307, and AN-12-H5, are known to have similar mutations in the 3A protein-encoding regi...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.02249-10
更新日期:2011-03-01 00:00:00
abstract::The effect of 5-bromodeoxyuridine (BrdU) on vaccinia virus-induced polypeptide synthesis in BSC-1 cells has been investigated. Most virus-induced pre- and post-replicative polypeptides were synthesized in concentrations of 5-bromodeoxyuridine that inhibited virus growth. The synthesis of a few post-replicative polypep...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.18.3.1131-1133.1976
更新日期:1976-06-01 00:00:00
abstract::Bacteriophage PRD1 contains DNA, 17 proteins, and lipid. The assembly pathway involves the formation of empty particles that contain lipid and all of the proteins of mature virions, with the possible exception of one. The major and minor capsid proteins, P3 and P5, occur as soluble multimers before they appear in the ...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.44.3.1021-1030.1982
更新日期:1982-12-01 00:00:00
abstract::The presence of porcine endogenous retroviruses presents a potential risk of transmission of infectious diseases (xenozoonosis) if tissues and organs from genetically modified pigs are to be used in xenotransplantation. Here, we report that intracellular expression of a llama single-domain antibody against p15, the ma...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/jvi.77.22.12132-12139.2003
更新日期:2003-11-01 00:00:00
abstract::Reovirus serotype 1 Lang can be recovered in high titer from the intestines of neonatal mice up to day 8 after peroral inoculation. By contrast, reovirus serotype 3 Dearing cannot be recovered from intestinal tissue past day 4 after peroral inoculation. This difference between the two reoviruses was mapped by using re...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.63.3.1188-1193.1989
更新日期:1989-03-01 00:00:00
abstract:UNLABELLED:Pattern recognition receptors (PRR) sense certain molecular patterns uniquely expressed by pathogens. Retinoic-acid-inducible gene I (RIG-I) is a cytosolic PRR that senses viral nucleic acids and induces innate immune activation and secretion of type I interferons (IFNs). Here, using influenza vaccine antige...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.02273-14
更新日期:2014-12-01 00:00:00
abstract::Type C RNA viruses initially isolated from a lymphosarcoma of a gibbon ape and from a fibrosarcoma of a woolly monkey are very closely related immunologically. However, recent studies have shown that these viruses are distinguishable in a radioimmunoassay for the 12,000-molecular-weight polypeptide (p12) of the woolly...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.15.1.115-120.1975
更新日期:1975-01-01 00:00:00
abstract::The major DNA-binding protein encoded by several temperature-sensitive mutants of herpes simplex virus type 1 was thermolabile for binding to intracellular viral DNA. The ability of DNase I to release this protein from isolated nuclei was used as a measure of the amount of protein bound to viral DNA. This assay was ba...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.46.3.909-919.1983
更新日期:1983-06-01 00:00:00
abstract::Nucleocapsids were isolated from purified enveloped nucleocapsids of Plodia interpunctella granulosis virus by treatment with Nonidet P-40. When analyzed on sodium dodecyl sulfate-polyacrylamide gels, the nucleocapsids consisted of eight polypeptides. One of these, a major component with a molecular weight of 12,500 (...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.33.2.866-876.1980
更新日期:1980-02-01 00:00:00
abstract::Poliovirus inactivation by ammonia causes a slight reduction in the sedimentation coefficients of viral particles, but has no detectable effect on either the electrophoretic pattern of viral capsid proteins or the isoelectric points of inactivated particles. These virions still attach to cells, but are unable to repre...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.26.2.299-305.1978
更新日期:1978-05-01 00:00:00
abstract::Human influenza viruses are more efficiently isolated by inoculating patient samples into the amniotic rather than the allantoic cavity of embryonated chicken eggs. This type of cultivation selects virus variants with mutations around the hemagglutinin (HA) receptor binding site. To understand the molecular basis of t...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.71.4.3357-3362.1997
更新日期:1997-04-01 00:00:00
abstract::The replication of positive-strand RNA viral genomes involves various cis-acting RNA sequences. Generally, regulatory RNA sequences are present at or near genomic termini; however, internal replication elements (IREs) also exist. Here we report the structural and functional characterization of an IRE present in the re...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.79.8.4848-4858.2005
更新日期:2005-04-01 00:00:00