Phylogeography and species biogeography of montane Great Basin stoneflies.

Abstract:

:Sky islands are ideal systems for determining the effects of climatic oscillations on species distributions and genetic structure. Our study focused on montane stonefly populations in the Great Basin of western North America. We used niche-based distribution modelling, phylogeography and traditional species-based biogeography to test several hypotheses as follows: (i) genetic differentiation among Doroneuria baumanni populations will be independent of hydrologic connectivity (headwater model); (ii) Sky islands were colonized when habitat was more continuous and populations likely experienced multiple expansions and contractions; (iii) Colonization events were coincident with the late Pleistocene and Holocene; and (iv) Shared topography and climate history will result in concordant patterns of genetic differentiation in D. baumanni and occurrences of 32 stonefly species across the region. Overall, Φ(ST) 's and coalescent-based estimates of migration were consistent with the headwater model. Maximum likelihood and Bayesian gene trees identified three major nonoverlapping east-west clades. Distribution modelling indicated more suitable habitat in the Great Basin during the Last Glacial Maximum than at present, but none during the last interglacial period. Demographic analyses showed evidence of population expansion in one of the three major east-west clades. Intra-clade divergence times (60,000-183,000ybp) were well within the late Pleistocene while among-clade divergence times (499.000-719,000ybp) were deeper. Genetic differentiation in D. baumanni and distributions of stonefly species were significantly concordant. These results imply that climatic oscillations have played major roles in shaping the genetic structure and distributions of Great Basin stoneflies, but that divergence among clades occurred much earlier than our late Pleistocence/early Holocene predictions.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Schultheis AS,Booth JY,Perlmutter LR,Bond JE,Sheldon AL

doi

10.1111/j.1365-294X.2012.05599.x

subject

Has Abstract

pub_date

2012-07-01 00:00:00

pages

3325-40

issue

13

eissn

0962-1083

issn

1365-294X

journal_volume

21

pub_type

杂志文章
  • Telomere attrition predicts reduced survival in a wild social bird, but short telomeres do not.

    abstract::Attempts to understand the causes of variation in senescence trajectories would benefit greatly from biomarkers that reflect the progressive declines in somatic integrity (SI) that lead to senescence. While telomere length has attracted considerable interest in this regard, sources of variation in telomere length pote...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15181

    authors: Wood EM,Young AJ

    更新日期:2019-08-01 00:00:00

  • Spawning success in Atlantic salmon (Salmo salar L.): a long-term DNA profiling-based study conducted in a natural stream.

    abstract::Spawning success of Atlantic salmon (Salmo salar L.) was investigated, under near-natural conditions, in the Girnock Burn, an 8-km long tributary of the River Dee in Scotland. Employing minisatellite-based DNA profiling, mating outcomes were resolved over three spawning seasons by assigning parentage to progeny sample...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2001.01254.x

    authors: Taggart JB,McLaren IS,Hay DW,Webb JH,Youngson AF

    更新日期:2001-04-01 00:00:00

  • Positive relationships between genetic diversity and abundance in fishes.

    abstract::Molecular markers, such as mitochondrial DNA and microsatellite loci, are widely studied to assess population genetics and phylogeography; however, the selective neutrality of these markers is increasingly being questioned. Given the importance of molecular markers in fisheries science and conservation, we evaluated t...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04822.x

    authors: McCusker MR,Bentzen P

    更新日期:2010-11-01 00:00:00

  • A DNA test to sex ratite birds.

    abstract::DNA-based sex tests now exist for many avian species. However, none of these tests are widely applicable to ratites. We present DNA sequence data for a locus that is W chromosome-linked in the kiwi, ostrich, cassowary, rhea, and emu. At the amino acid level, this sequence has significant homology to X-linked genes in ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01483.x

    authors: Huynen L,Millar CD,Lambert DM

    更新日期:2002-04-01 00:00:00

  • Genetic monitoring to assess the success of restoring rare plant populations with mixed gene pools.

    abstract::Increasing genetic diversity and maintaining evolutionary processes are primary goals of conservation translocations, which involve the intentional movement of an at-risk species to establish new populations or augment existing populations, with the ultimate goal of reversing declines. Much debate has focused on how t...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/mec.15658

    authors: Albrecht MA,Edwards CE

    更新日期:2020-11-01 00:00:00

  • Nonadditive indirect effects of group genetic diversity on larval viability in Drosophila melanogaster imply key role of maternal decision-making.

    abstract::Genetic variation can have important consequences for populations: high population genetic diversity is typically associated with ecological success. Some mechanisms that account for these benefits assume that local social groups with high genetic diversity are more successful than low-diversity groups. At the same ti...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2012.05518.x

    authors: Saltz JB,Alicuben ET,Grubman J,Harkenrider M,Megowan N,Nuzhdin SV

    更新日期:2012-05-01 00:00:00

  • Habitat age, breeding system and kinship in the ant Formica fusca.

    abstract::In polygyne ants (multiple queens per colony) factors that affect the distribution and survival of queens may play a key role in shaping the population-wide mating system and colony kin structure. The aim of this paper was to study the breeding system in two populations of different age in the facultatively polygyne a...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02136.x

    authors: Hannonen M,Helanterä H,Sundström L

    更新日期:2004-06-01 00:00:00

  • Quantitative polymerase chain reaction analysis of DNA from noninvasive samples for accurate microsatellite genotyping of wild chimpanzees (Pan troglodytes verus).

    abstract::Noninvasive samples are useful for molecular genetic analyses of wild animal populations. However, the low DNA content of such samples makes DNA amplification difficult, and there is the potential for erroneous results when one of two alleles at heterozygous microsatellite loci fails to be amplified. In this study we ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.0962-1083.2001.01308.x

    authors: Morin PA,Chambers KE,Boesch C,Vigilant L

    更新日期:2001-07-01 00:00:00

  • QTL mapping of freezing tolerance: links to fitness and adaptive trade-offs.

    abstract::Local adaptation, defined as higher fitness of local vs. nonlocal genotypes, is commonly identified in reciprocal transplant experiments. Reciprocally adapted populations display fitness trade-offs across environments, but little is known about the traits and genes underlying fitness trade-offs in reciprocally adapted...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12862

    authors: Oakley CG,Ågren J,Atchison RA,Schemske DW

    更新日期:2014-09-01 00:00:00

  • A comparison of pedigree- and DNA-based measures for identifying inbreeding depression in the critically endangered Attwater's Prairie-chicken.

    abstract::The primary goal of captive breeding programmes for endangered species is to prevent extinction, a component of which includes the preservation of genetic diversity and avoidance of inbreeding. This is typically accomplished by minimizing mean kinship in the population, thereby maintaining equal representation of the ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12482

    authors: Hammerly SC,Morrow ME,Johnson JA

    更新日期:2013-11-01 00:00:00

  • Contrasting genetic responses to population fragmentation in a coevolving fig and fig wasp across a mainland-island archipelago.

    abstract::Interacting species of pollinator-host systems, especially the obligate ones, are sensitive to habitat fragmentation, due to the nature of mutual dependence. Comparative studies of genetic structure can provide insights into how habitat fragmentation contributes to patterns of genetic divergence among populations of t...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12406

    authors: Liu M,Zhang J,Chen Y,Compton SG,Chen XY

    更新日期:2013-09-01 00:00:00

  • A genetic similarity rule determines arthropod community structure.

    abstract::We define a genetic similarity rule that predicts how genetic variation in a dominant plant affects the structure of an arthropod community. This rule applies to hybridizing cottonwood species where plant genetic variation determines plant-animal interactions and structures a dependent community of leaf-modifying arth...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02749.x

    authors: Bangert RK,Turek RJ,Rehill B,Wimp GM,Schweitzer JA,Allan GJ,Bailey JK,Martinsen GD,Keim P,Lindroth RL,Whitham TG

    更新日期:2006-04-01 00:00:00

  • Unraveling hierarchical genetic structure in a marine metapopulation: A comparison of three high-throughput genotyping approaches.

    abstract::Marine metapopulations often exhibit subtle population structure that can be difficult to detect. Given recent advances in high-throughput sequencing, an emerging question is whether various genotyping approaches, in concert with improved sampling designs, will substantially improve our understanding of genetic struct...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15405

    authors: D'Aloia CC,Andrés JA,Bogdanowicz SM,McCune AR,Harrison RG,Buston PM

    更新日期:2020-06-01 00:00:00

  • Living the high life: Could gut microbiota matter for adaptation to high altitude?

    abstract::At high altitude, the reduced availability of thermal energy and oxygen poses major challenges to organisms. Different species or populations have evolved similar solutions to these challenges, such as blood flow regulation in animals (Bouverot, 1985). Previous studies investigating such convergent adaptations have pr...

    journal_title:Molecular ecology

    pub_type: 评论,新闻

    doi:10.1111/mec.15093

    authors: Mazel F

    更新日期:2019-05-01 00:00:00

  • Transcriptome dynamics over a lunar month in a broadcast spawning acroporid coral.

    abstract::On one night per year, at a specific point in the lunar cycle, one of the most extraordinary reproductive events on the planet unfolds as hundreds of millions of broadcast spawning corals release their trillions of gametes into the waters of the tropical seas. Each species spawns on a specific night within the lunar c...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14043

    authors: Oldach MJ,Workentine M,Matz MV,Fan TY,Vize PD

    更新日期:2017-05-01 00:00:00

  • Speciation timing and neotropical biodiversity: the Tertiary-Quaternary debate in the light of molecular phylogenetic evidence.

    abstract::The evolutionary origin of extant species in the Neotropics, one of the most biodiverse regions of the world, has been widely debated. One hypothesis is that neotropical species emerged primarily during the Quaternary (the last approximately 2 million years), favoured by alternating glacial/interglacial climates. An o...

    journal_title:Molecular ecology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-294X.2008.03789.x

    authors: Rull V

    更新日期:2008-06-01 00:00:00

  • Spatial patterning of soil microbial communities created by fungus-farming termites.

    abstract::Spatially overdispersed mounds of fungus-farming termites (Macrotermitinae) are hotspots of nutrient availability and primary productivity in tropical savannas, creating spatial heterogeneity in communities and ecosystem functions. These termites influence the local availability of nutrients in part by redistributing ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15585

    authors: Baker CCM,Castillo Vardaro JA,Doak DF,Pansu J,Puissant J,Pringle RM,Tarnita CE

    更新日期:2020-11-01 00:00:00

  • The Baltic Sea as a model system for studying postglacial colonization and ecological differentiation, exemplified by the red alga Ceramium tenuicorne.

    abstract::The Baltic Sea provides a unique model system for studying genetic effects of postglacial colonization and ecological differentiation, because all marine organisms must have immigrated after the opening of the Danish Straits 8000 years ago and responded to the development of the steep Skagerrak-Baltic salinity gradien...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01601.x

    authors: Gabrielsen TM,Brochmann C,Rueness J

    更新日期:2002-10-01 00:00:00

  • Genetic population structure of the white sifaka (Propithecus verreauxi verreauxi) at Beza Mahafaly Special Reserve, southwest Madagascar (1992-2001).

    abstract::Gene flow within and between social groups is contingent on behaviourally mediated patterns of mating and dispersal. To understand how these patterns affect the genetic structure of primate populations, long-term data are required. In this study, we analyse 10 years of demographic and genetic data from a wild lemur po...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01909.x

    authors: Lawler RR,Richard AF,Riley MA

    更新日期:2003-09-01 00:00:00

  • Major histocompatibility complex heterozygosity enhances reproductive success.

    abstract::We investigated how heterozygosity at the major histocompatibility complex (MHC) affects fitness in wild-derived (F2) house mice (Mus musculus musculus). To compare and control for potential confounding effects from close inbreeding and genome-wide heterozygosity, we used mice that were systematically outbred. We asse...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05009.x

    authors: Thoss M,Ilmonen P,Musolf K,Penn DJ

    更新日期:2011-04-01 00:00:00

  • Gene lineages and eastern North American palaeodrainage basins: phylogeography and speciation in salamanders of the Eurycea bislineata species complex.

    abstract::Contemporary North American drainage basins are composites of formerly isolated drainages, suggesting that fragmentation and fusion of palaeodrainage systems may have been an important factor generating current patterns of genetic and species diversity in stream-associated organisms. Here, we combine traditional molec...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02757.x

    authors: Kozak KH,Blaine RA,Larson A

    更新日期:2006-01-01 00:00:00

  • Comparative genome scan detects host-related divergent selection in the grasshopper Hesperotettix viridis.

    abstract::In this study, we used a comparative genome scan to examine patterns of population differentiation with respect to host plant use in Hesperotettix viridis, a Nearctic oligophagous grasshopper locally specialized on various Asteraceae including Solidago, Gutierrezia, and Ericameria. We identified amplified fragment len...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04792.x

    authors: Apple JL,Grace T,Joern A,St Amand P,Wisely SM

    更新日期:2010-09-01 00:00:00

  • Species discovery and validation in a cryptic radiation of endangered primates: coalescent-based species delimitation in Madagascar's mouse lemurs.

    abstract::Implementation of the coalescent model in a Bayesian framework is an emerging strength in genetically based species delimitation studies. By providing an objective measure of species diagnosis, these methods represent a quantitative enhancement to the analysis of multilocus data, and complement more traditional method...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13604

    authors: Hotaling S,Foley ME,Lawrence NM,Bocanegra J,Blanco MB,Rasoloarison R,Kappeler PM,Barrett MA,Yoder AD,Weisrock DW

    更新日期:2016-05-01 00:00:00

  • Patterns of variation at a mitochondrial sequence-tagged-site locus provides new insights into the postglacial history of European Pinus sylvestris populations.

    abstract::Due to their maternal mode of inheritance, mitochondrial markers can be regarded as almost 'ideal' tools in evolutionary studies of conifer populations. In the present study, polymorphism was analysed at one mitochondrial intron (nad 1, exon B/C) in 23 native European Pinus sylvestris populations. In a preliminary scr...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2000.00994.x

    authors: Soranzo N,Alia R,Provan J,Powell W

    更新日期:2000-09-01 00:00:00

  • These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists.

    abstract::Sequencing reduced-representation libraries of restriction site-associated DNA (RADseq) to identify single nucleotide polymorphisms (SNPs) is quickly becoming a standard methodology for molecular ecologists. Because of the scale of RADseq data sets, putative loci cannot be assessed individually, making the process of ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14792

    authors: O'Leary SJ,Puritz JB,Willis SC,Hollenbeck CM,Portnoy DS

    更新日期:2018-07-10 00:00:00

  • Phylogeography of the sergeants Abudefduf sexfasciatus and A. vaigiensis reveals complex introgression patterns between two widespread and sympatric Indo-West Pacific reef fishes.

    abstract::On evolutionary timescales, sea level oscillations lead to recurrent spatio-temporal variation in species distribution and population connectivity. In this situation, applying classical concepts of biogeography is challenging yet necessary to understand the mechanisms underlying biodiversity in highly diverse marine e...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14044

    authors: Bertrand JAM,Borsa P,Chen WJ

    更新日期:2017-05-01 00:00:00

  • Interspecific hybridization and restricted trans-Pacific gene flow in the Tropical Eastern Pacific Pocillopora.

    abstract::Coral reefs in the Tropical Eastern Pacific (TEP) are among the most isolated in the world. This isolation has resulted in relatively low species diversity but comparatively high endemism. The dominant reef-building corals of the TEP are the Pocillopora corals, a ubiquitous Indo-Pacific genus commonly regarded as infe...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03672.x

    authors: Combosch DJ,Guzman HM,Schuhmacher H,Vollmer SV

    更新日期:2008-03-01 00:00:00

  • Comparative riverscape genetics reveals reservoirs of genetic diversity for conservation and restoration of Great Plains fishes.

    abstract::We used comparative landscape genetics to examine the relative roles of historical events, intrinsic traits and landscape factors in determining the distribution of genetic diversity of river fishes across the North American Great Plains. Spatial patterns of diversity were overlaid on a patch-based graphical model and...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12970

    authors: Osborne MJ,Perkin JS,Gido KB,Turner TF

    更新日期:2014-12-01 00:00:00

  • Genomic characterization of sex-identification markers in Sebastes carnatus and Sebastes chrysomelas rockfishes.

    abstract::Fish have evolved a variety of sex-determining (SD) systems including male heterogamy (XY), female heterogamy (ZW) and environmental SD. Little is known about SD mechanisms of Sebastes rockfishes, a highly speciose genus of importance to evolutionary and conservation biology. Here, we characterize the sex determinatio...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13594

    authors: Fowler BL,Buonaccorsi VP

    更新日期:2016-05-01 00:00:00

  • Variable extent of hybridization between invasive sika (Cervus nippon) and native red deer (C. elaphus) in a small geographical area.

    abstract::Instances of hybridization between endemic and alien species pose a threat to species integrity but also provide us with an opportunity to study the dynamics of gene flow between two species as they first meet. Here, we used variation at 22 highly differentiated microsatellite loci and one mitochondrial DNA (mtDNA) ma...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2008.04051.x

    authors: Senn HV,Pemberton JM

    更新日期:2009-03-01 00:00:00