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Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs.

Abstract：

:A role for microRNA (miRNA) has been recognized in nearly every biologic system examined thus far. A complete delineation of their role must be preceded by the identification of all miRNAs present in any system. We elucidated the complete small RNA transcriptome of normal and malignant B cells through deep sequencing of 31 normal and malignant human B-cell samples that comprise the spectrum of B-cell differentiation and common malignant phenotypes. We identified the expression of 333 known miRNAs, which is more than twice the number previously recognized in any tissue type. We further identified the expression of 286 candidate novel miRNAs in normal and malignant B cells. These miRNAs were validated at a high rate (92%) using quantitative polymerase chain reaction, and we demonstrated their application in the distinction of clinically relevant subgroups of lymphoma. We further demonstrated that a novel miRNA cluster, previously annotated as a hypothetical gene LOC100130622, contains 6 novel miRNAs that regulate the transforming growth factor-β pathway. Thus, our work suggests that more than a third of the miRNAs present in most cellular types are currently unknown and that these miRNAs may regulate important cellular functions.

journal_name

Blood

journal_title

Blood

authors

Jima DD,Zhang J,Jacobs C,Richards KL,Dunphy CH,Choi WW,Au WY,Srivastava G,Czader MB,Rizzieri DA,Lagoo AS,Lugar PL,Mann KP,Flowers CR,Bernal-Mizrachi L,Naresh KN,Evens AM,Gordon LI,Luftig M,Friedman DR,Weinberg JB

doi

10.1182/blood-2010-05-285403

subject

Has Abstract

pub_date

2010-12-02 00:00:00

pages

e118-27

issue

23

eissn

0006-4971

issn

1528-0020

pii

blood-2010-05-285403

journal_volume

116

pub_type

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