An automated pipeline for cortical sulcal fundi extraction.

Abstract:

:In this paper, we propose a novel automated pipeline for extraction of sulcal fundi from triangulated cortical surfaces. This method consists of four consecutive steps. Firstly, we adopt a finite difference method to estimate principal curvatures, principal directions and curvature derivatives, along the principal directions, for each vertex. Then, we detect the sulcal fundi segment in each triangle of the cortical surface based on curvatures and curvature derivatives. Afterwards, we link the sulcal fundi segments into continuous curves. Finally, we connect breaking sulcal fundi and smooth bumping sulcal fundi by using the fast marching method on the cortical surface. The proposed method can find the accurate sulcal fundi using curvatures and curvature derivatives without any manual interaction. The method was applied to 10 normal brain MR images on inner cortical surfaces. We quantitatively evaluated the accuracy of the sulcal fundi extraction method using manually labeled sulcal fundi by experts. The average difference between automatically extracted major sulcal fundi and the expert labeled results is consistently around 1.0mm on 10 subject images, indicating the good performance of the proposed method.

journal_name

Med Image Anal

journal_title

Medical image analysis

authors

Li G,Guo L,Nie J,Liu T

doi

10.1016/j.media.2010.01.005

subject

Has Abstract

pub_date

2010-06-01 00:00:00

pages

343-59

issue

3

eissn

1361-8415

issn

1361-8423

pii

S1361-8415(10)00014-9

journal_volume

14

pub_type

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