Landscape genetics, historical isolation and cross-Andean gene flow in the wax palm, Ceroxylon echinulatum (Arecaceae).

Abstract:

:Knowledge of the role of landscapes in shaping genetic connectivity and divergence is essential for understanding patterns of biogeography and diversity. This is particularly relevant for the Andes region, a major biodiversity hotspot of relatively recent origin. We examined the phylogeography and landscape genetics of the Andean wax palm Ceroxylon echinulatum (Arecaceae) that occurs in two narrow bands of montane forests on each side of the Andes in Ecuador and northeastern Peru. First, we tested the hypothesis of C. echinulatum being a geographic cline species crossing the Andes in the Amotape-Huancabamba zone (AHZ) of southern Ecuador/northern Peru, as indicated by observations on fruit morphology. Second, we assessed the timeframe of cross-Andean divergence, and third, we investigated the impact of contemporary and historical landscape features on observed spatio-genetic patterns. Individual-based Bayesian clustering (BC) identified a northeastern, southeastern, southwestern, and northwestern cluster, with areas of genetic discontinuity coinciding with the Andes and the Giron-Paute deflection. F-statistics derived from BC suggested an east-to-west dispersal history. Population-based analyses revealed strong genetic structuring at both small and large geographic scales. Interpopulation relationships and Mantel tests strongly supported the cline model with cross-Andean dispersal in the AHZ. Along the cline, gene flow measured as F(ST) was mainly limited by distance, with less but significant impact of climatic friction. Coalescent analysis revealed that cross-Andean divergence took place during the Quaternary. Significant historical isolation (R(ST) > F(ST)) was found in the southwestern population. The current study illustrates a joint effect of founder dynamics, divergence by distance and historical isolation on patterns of Andean diversity and distribution.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Trénel P,Hansen MM,Normand S,Borchsenius F

doi

10.1111/j.1365-294x.2008.03853.x

subject

Has Abstract

pub_date

2008-08-01 00:00:00

pages

3528-40

issue

15

eissn

0962-1083

issn

1365-294X

journal_volume

17

pub_type

杂志文章
  • Molecular mechanisms of adaptation and speciation: why do we need an integrative approach?

    abstract::Understanding divergent adaptation and ecological speciation requires the synthesis of multiple approaches, including phenotypic characterization, genetics and genomics, realistic assessment of fitness and population genetic modelling. Current research in this field often approaches this problem from one of two direct...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13678

    authors: Byers KJ,Xu S,Schlüter PM

    更新日期:2017-01-01 00:00:00

  • Leveraging eDNA to expand the study of hybrid zones.

    abstract::Hybrid zones are important windows into ecological and evolutionary processes. Our understanding of the significance and prevalence of hybridization in nature has expanded with the generation and analysis of genome-spanning data sets. That said, most hybridization research still has restricted temporal and spatial res...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15514

    authors: Stewart KA,Taylor SA

    更新日期:2020-08-01 00:00:00

  • Fine-scale phylogeographical analysis of Mediterranean Anacamptis palustris (Orchidaceae) populations based on chloroplast minisatellite and microsatellite variation.

    abstract::The phylogeographical history of the rare marsh orchid Anacamptis palustris (Orchidaceae) was reconstructed using highly polymorphic chloroplast minisatellite and microsatellite loci. Allelic variation at chloroplast microsatellite loci was due to length variation in poly(A/T) repeats and was informative on a regional...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01958.x

    authors: Cozzolino S,Cafasso D,Pellegrino G,Musacchio A,Widmer A

    更新日期:2003-10-01 00:00:00

  • Spatial genetic structure in a metapopulation of the land snail Cepaea nemoralis (Gastropoda: Helicidae).

    abstract::Habitat fragmentation is a major force affecting demography and genetic structure of wild populations, especially in agricultural landscapes. The land snail Cepaea nemoralis (L.) was selected to investigate the impact of habitat fragmentation on the spatial genetic structure of an organism with limited dispersal abili...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02357.x

    authors: Schweiger O,Frenzel M,Durka W

    更新日期:2004-12-01 00:00:00

  • Expression profiling and local adaptation of Boechera holboellii populations for water use efficiency across a naturally occurring water stress gradient.

    abstract::We studied the physiological basis of local adaptation to drought in Boechera holboellii, a perennial relative of Arabidopsis thaliana, and used cDNA-AFLPs to identify candidate genes showing differential expression in these populations. We compared two populations of B. holboellii from contrasting water environments ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2006.02818.x

    authors: Knight CA,Vogel H,Kroymann J,Shumate A,Witsenboer H,Mitchell-Olds T

    更新日期:2006-04-01 00:00:00

  • Using genomic tools to maintain diversity and fitness in conservation programmes.

    abstract::Conservation programmes aim at maximizing the survival probability of populations, by minimizing the loss of genetic diversity, which allows populations to adapt to changes, and controlling inbreeding increases. The best known strategy to achieve these goals is optimizing the contributions of the parents to minimize g...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12560

    authors: de Cara MÁ,Villanueva B,Toro MÁ,Fernández J

    更新日期:2013-12-01 00:00:00

  • Climate and habitat barriers to dispersal in the highly mobile grey wolf.

    abstract::We reanalysed published data to evaluate whether climate and habitat are barriers to dispersal in one of the most mobile and widely distributed mammals, the grey wolf (Canis lupus). Distance-based redundancy analysis (dbRDA) was used to examine the amount of variation in genetic distances that could be explained by an...

    journal_title:Molecular ecology

    pub_type: 杂志文章,meta分析

    doi:10.1111/j.1365-294X.2004.02244.x

    authors: Geffen E,Anderson MJ,Wayne RK

    更新日期:2004-08-01 00:00:00

  • Patterns of interventions and the effect of coalitions and sociality on male fitness.

    abstract::In group living animals, especially among primates, there is consistent evidence that high-ranking males gain a higher reproductive output than low-ranking males. Primate studies have shown that male coalitions and sociality can impact male fitness; however, it remains unclear whether males could potentially increase ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05250.x

    authors: Kulik L,Muniz L,Mundry R,Widdig A

    更新日期:2012-02-01 00:00:00

  • Evolutionary history of coastal tiger beetles in Japan based on a comparative phylogeography of four species.

    abstract::To reveal the phylogeographical patterns of four species of coastal tiger beetles in Japan (Lophyridia angulata, Abroscelis anchoralis, Cicindela lewisii and Chaetodera laetescripta), we conducted phylogenetic and nested clade analysis (NCA) using the mitochondrial DNA sequences of two loci (COI and 16S rRNA), with sp...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02274.x

    authors: Satoh A,Sota T,Ueda T,Enokido Y,Paik JC,Hori M

    更新日期:2004-10-01 00:00:00

  • Gene expression under thermal stress varies across a geographical range expansion front.

    abstract::Many ectothermic species are currently expanding their distributions polewards due to anthropogenic global warming. Molecular genetic mechanisms facilitating range expansion under these conditions are largely unknown, but understanding these could help mitigate expanding pests and disease vectors, or help explain why ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13548

    authors: Lancaster LT,Dudaniec RY,Chauhan P,Wellenreuther M,Svensson EI,Hansson B

    更新日期:2016-03-01 00:00:00

  • Major histocompatibility complex heterozygosity enhances reproductive success.

    abstract::We investigated how heterozygosity at the major histocompatibility complex (MHC) affects fitness in wild-derived (F2) house mice (Mus musculus musculus). To compare and control for potential confounding effects from close inbreeding and genome-wide heterozygosity, we used mice that were systematically outbred. We asse...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05009.x

    authors: Thoss M,Ilmonen P,Musolf K,Penn DJ

    更新日期:2011-04-01 00:00:00

  • Comparison of population genetic patterns in two widespread freshwater mussels with contrasting life histories in western North America.

    abstract::We investigate population genetic structuring in Margaritifera falcata, a freshwater mussel native to western North America, across the majority of its geographical range. We find shallow rangewide genetic structure, strong population-level structuring and very low population diversity in this species, using both mito...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12557

    authors: Mock KE,Brim Box JC,Chong JP,Furnish J,Howard JK

    更新日期:2013-12-01 00:00:00

  • Shedding light on the evolution of plasticity in natural populations.

    abstract::Plasticity allows for changes in phenotype in response to environmental cues, often facilitating local adaptation to seasonal environments. Phenotypic plasticity alone, however, may not always be sufficient to ensure adaptation to new localities. In particular, changing cues associated with shifting seasonal regimes m...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/j.1365-294X.2011.05215.x

    authors: Hyma KE,Caicedo AL

    更新日期:2011-09-01 00:00:00

  • Movement of transposable elements contributes to cichlid diversity.

    abstract::African cichlid fishes are a prime model for studying speciation mechanisms. Despite the development of extensive genomic resources, it has been difficult to determine which sources of genetic variation are responsible for cichlid phenotypic variation. One of their most variable phenotypes is visual sensitivity, with ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15685

    authors: Carleton KL,Conte MA,Malinsky M,Nandamuri SP,Sandkam BA,Meier JI,Mwaiko S,Seehausen O,Kocher TD

    更新日期:2020-12-01 00:00:00

  • Colonization history of the high-arctic pink-footed goose Anser brachyrhynchus.

    abstract::Population structure and phylogeography of the pink-footed goose, Anser brachyrhynchus Baillon 1833, was studied using mtDNA control region sequences (221 bp) from 142 individuals. Present breeding areas of the species in Greenland, Iceland, and Svalbard were largely covered by ice during the late Pleistocene. In pair...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02380.x

    authors: Ruokonen M,Aarvak T,Madsen J

    更新日期:2005-01-01 00:00:00

  • Ecotypes of an ecologically dominant prairie grass (Andropogon gerardii) exhibit genetic divergence across the U.S. Midwest grasslands' environmental gradient.

    abstract::Big bluestem (Andropogon gerardii) is an ecologically dominant grass with wide distribution across the environmental gradient of U.S. Midwest grasslands. This system offers an ideal natural laboratory to study population divergence and adaptation in spatially varying climates. Objectives were to: (i) characterize neut...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12993

    authors: Gray MM,St Amand P,Bello NM,Galliart MB,Knapp M,Garrett KA,Morgan TJ,Baer SG,Maricle BR,Akhunov ED,Johnson LC

    更新日期:2014-12-01 00:00:00

  • Fine-scale genetic structure and dispersal in cooperatively breeding apostlebirds.

    abstract::In cooperatively breeding species, restricted dispersal of offspring leads to clustering of closely related individuals, increasing the potential both for indirect genetic benefits and inbreeding costs. In apostlebirds (Struthidea cinerea), philopatry by both sexes results in the formation of large (up to 17 birds), p...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2006.03009.x

    authors: Woxvold IA,Adcock GJ,Mulder RA

    更新日期:2006-10-01 00:00:00

  • Estimation of the dispersal of a major pest of maize by cline analysis of a temporary contact zone between two invasive outbreaks.

    abstract::Dispersal is a key factor in invasion and in the persistence and evolution of species. Despite the importance of estimates of dispersal distance, dispersal measurement remains a real methodological challenge. In this study, we characterized dispersal by exploiting a specific case of biological invasion, in which multi...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12489

    authors: Bermond G,Blin A,Vercken E,Ravigné V,Rieux A,Mallez S,Morel-Journel T,Guillemaud T

    更新日期:2013-11-01 00:00:00

  • Fine-scale population structure and riverscape genetics of brook trout (Salvelinus fontinalis) distributed continuously along headwater channel networks.

    abstract::Linear and heterogeneous habitat makes headwater stream networks an ideal ecosystem in which to test the influence of environmental factors on spatial genetic patterns of obligatory aquatic species. We investigated fine-scale population structure and influence of stream habitat on individual-level genetic differentiat...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05210.x

    authors: Kanno Y,Vokoun JC,Letcher BH

    更新日期:2011-09-01 00:00:00

  • Genetic variability and phylogeography of the invasive zebra mussel, Dreissena polymorpha (Pallas).

    abstract::The zebra mussel, Dreissena polymorpha (Pallas), a bivalve species originally native to the Black and Caspian seas, has invaded Ireland in the last decade. Five microsatellite loci were used to investigate genetic diversity and population structure in 10 populations across Europe (Ireland, UK, the Netherlands and Roma...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02530.x

    authors: Astanei I,Gosling E,Wilson J,Powell E

    更新日期:2005-05-01 00:00:00

  • MHC diversity and the association to nematode parasitism in the yellow-necked mouse (Apodemus flavicollis).

    abstract::In vertebrates, the genes of the major histocompatibility complex (MHC) are among the most debated candidates accounting for co-evolutionary processes of host-parasite interaction at the molecular level. The exceptionally high allelic polymorphism found in MHC loci is believed to be maintained by pathogen-driven selec...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02557.x

    authors: Meyer-Lucht Y,Sommer S

    更新日期:2005-06-01 00:00:00

  • Prevalence of interspecific hybrids amongst asexual fungal endophytes of grasses.

    abstract::Epichloë endophytes are fungal symbionts of grasses that span a continuum including asexual mutualists that are vertically transmitted, obligately sexual pathogens that are horizontally transmitted, and mixed-strategy symbionts with both mutualistic and pathogenic capabilities. Here we show that processes of genome ev...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02138.x

    authors: Moon CD,Craven KD,Leuchtmann A,Clement SL,Schardl CL

    更新日期:2004-06-01 00:00:00

  • Prevalence and penetrance variation of male-killing Wolbachia across Indo-Pacific populations of the butterfly Hypolimnas bolina.

    abstract::Male-killing bacteria are generally thought to attain low to intermediate prevalence in natural populations, with only mild effects on the host population sex ratio. This view was recently challenged by reports of extremely high infection frequencies in three butterfly species, raising the prospect that male killers, ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02678.x

    authors: Charlat S,Hornett EA,Dyson EA,Ho PP,Loc NT,Schilthuizen M,Davies N,Roderick GK,Hurst GD

    更新日期:2005-10-01 00:00:00

  • Haplotype (mtDNA) diversity of brown trout Salmo trutta in tributaries of the Austrian Danube: massive introgression of Atlantic basin fish--by man or nature?

    abstract::Mitochondrial haplotype diversity in 27 populations of brown trout, Salmo trutta L., in Austria was investigated by sequencing the 5' end of the mitochondrial DNA (mtDNA) control region. Although all populations are within the Danube drainage, 44% of all individuals carried Atlantic basin haplotypes. It is argued that...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2001.01261.x

    authors: Weiss S,Schlötterer C,Waidbacher H,Jungwirth M

    更新日期:2001-05-01 00:00:00

  • Rates of gut microbiome divergence in mammals.

    abstract::The variation and taxonomic diversity among mammalian gut microbiomes raises several questions about the factors that contribute to the rates and patterns of change in these microbial communities. By comparing the microbiome compositions of 112 species representing 14 mammalian orders, we assessed how host and ecologi...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14473

    authors: Nishida AH,Ochman H

    更新日期:2018-04-01 00:00:00

  • Association between Wolbachia and Spiroplasma within Drosophila neotestacea: an emerging symbiotic mutualism?

    abstract::Interspecific mutualism can evolve when specific lineages of different species tend to be associated with each other from one generation to the next. Different maternally transmitted endosymbionts occurring within the same cytoplasmic lineage fulfil this requirement. Drosophila neotestacea is infected with maternally ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04448.x

    authors: Jaenike J,Stahlhut JK,Boelio LM,Unckless RL

    更新日期:2010-01-01 00:00:00

  • Comparative genome scan detects host-related divergent selection in the grasshopper Hesperotettix viridis.

    abstract::In this study, we used a comparative genome scan to examine patterns of population differentiation with respect to host plant use in Hesperotettix viridis, a Nearctic oligophagous grasshopper locally specialized on various Asteraceae including Solidago, Gutierrezia, and Ericameria. We identified amplified fragment len...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04792.x

    authors: Apple JL,Grace T,Joern A,St Amand P,Wisely SM

    更新日期:2010-09-01 00:00:00

  • Expanding host specificity and pathogen sharing beyond viruses.

    abstract::Most emerging pathogens of humans can infect multiple host species (Woolhouse & Gowtage-Sequeria, 2005). This simple fact has motivated multiple large-scale, comparative analyses of the drivers of pathogen sharing and zoonotic pathogen richness among hosts as well as the factors determining the zoonotic potential of p...

    journal_title:Molecular ecology

    pub_type: 评论,新闻

    doi:10.1111/mec.15573

    authors: Becker DJ,Albery GF

    更新日期:2020-09-01 00:00:00

  • Phylogeographic past and invasive presence of Arion pest slugs in Europe.

    abstract::Arion vulgaris (syn. A. lusitanicus) is the most destructive pest slug in Europe. The species has been regarded a classic case of an ongoing biological invasion with negative economic and ecological impact in many European countries, but this status has recently been contested. In this study, we assessed mitochondrial...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13860

    authors: Zemanova MA,Knop E,Heckel G

    更新日期:2016-11-01 00:00:00

  • Fine-scale population structure, inbreeding risk and avoidance in a wild insect population.

    abstract::The ecological and evolutionary importance of fine-scale genetic structure within populations is increasingly appreciated. However, available data are largely restricted to wild vertebrates and eusocial insects. In addition, there is the expectation that most insects tend to have such large- and high-density populatio...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05140.x

    authors: Bretman A,Rodríguez-Muñoz R,Walling C,Slate J,Tregenza T

    更新日期:2011-07-01 00:00:00