ChIP-chip: data, model, and analysis.

Abstract:

:ChIP-chip (or ChIP-on-chip) is a technology for isolation and identification of genomic sites occupied by specific DNA-binding proteins in living cells. The ChIP-chip signals can be obtained over the whole genome by tiling arrays, where a peak shape is generally observed around a protein-binding site. In this article, we describe the ChIP-chip process and present a probability model for ChIP-chip data. We then propose a model-based method for recognizing the peak shapes for the purpose of detecting protein-binding sites. We also investigate the issue of bandwidth in nonparametric kernel smoothing method.

journal_name

Biometrics

journal_title

Biometrics

authors

Zheng M,Barrera LO,Ren B,Wu YN

doi

10.1111/j.1541-0420.2007.00768.x

subject

Has Abstract

pub_date

2007-09-01 00:00:00

pages

787-96

issue

3

eissn

0006-341X

issn

1541-0420

pii

BIOM768

journal_volume

63

pub_type

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