The recent history and population structure of five Mandarina snail species from subtropical Ogasawara (Bonin Islands, Japan).

Abstract:

:The effect of Pleistocene climate change on the organisms of tropical and subtropical regions is rather poorly understood. We therefore studied the land snail genus Mandarina (Bradybaenidae) of oceanic Ogasawara (Bonin Islands, Japan), with the aim of using population genetic data to understand their recent history. Our analysis of a mitochondrial 16S ribosomal RNA region from more than 600 snails in five ground-living species suggests that populations on the small islands of Mukoujima, Anejima, Imotojima and Meijima, as well as on the low-lying southern and central parts of Hahajima, have probably undergone recent bottlenecks followed by subsequent expansions. Except between the main island of Hahajima and Mukouijima, there is almost no evidence for gene flow among islands even though the islands were connected repeatedly by land bridges through the Pleistocene. Within islands the population structure is severe, suggestive of a long-term, low level of gene flow (F(ST) is frequently greater than 0.5 among geographically close populations). Finally, there is a marked genetic patchiness, meaning that genetically close populations are sometimes separated by genetically distant populations. These patterns could be a consequence of expansion from bottlenecks, low active dispersal and founder effects caused by rare long-distance migrants. Unfortunately, the exact nature of the refugia and bottlenecks remains unknown because the palaeoclimate of this region is poorly understood. Dating the population size changes is also challenging because the molecular clock is uncertain. We suggest, however, that arid conditions or deforestation induced by decreased atmospheric CO(2) may have been the main factor in determining population size.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Davison A,Chiba S

doi

10.1111/j.1365-294X.2006.02990.x

subject

Has Abstract

pub_date

2006-09-01 00:00:00

pages

2905-19

issue

10

eissn

0962-1083

issn

1365-294X

pii

MEC2990

journal_volume

15

pub_type

杂志文章
  • Exploring population genetic structure in three species of Lesser Antillean bats.

    abstract::We explore population genetic structure in phyllostomid bats (Ardops nichollsi, Brachyphylla cavernarum and Artibeus jamaicensis) from the northern Lesser Antilles by investigating the degree to which island populations are genetically differentiated. Our hypothesis, that the island populations are genetically distinc...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02250.x

    authors: Carstens BC,Sullivan J,Davalos LM,Larsen PA,Pedersen SC

    更新日期:2004-09-01 00:00:00

  • Genetic rescue: a safe or risky bet?

    abstract::Small and isolated populations face threats from genetic drift and inbreeding. To rescue populations from these threats, conservation biologists can augment gene flow into small populations to increase variation and reduce inbreeding depression. Spectacular success stories include greater prairie chickens in Illinois ...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/mec.13220

    authors: Waller DM

    更新日期:2015-06-01 00:00:00

  • Phylogeography of the sergeants Abudefduf sexfasciatus and A. vaigiensis reveals complex introgression patterns between two widespread and sympatric Indo-West Pacific reef fishes.

    abstract::On evolutionary timescales, sea level oscillations lead to recurrent spatio-temporal variation in species distribution and population connectivity. In this situation, applying classical concepts of biogeography is challenging yet necessary to understand the mechanisms underlying biodiversity in highly diverse marine e...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14044

    authors: Bertrand JAM,Borsa P,Chen WJ

    更新日期:2017-05-01 00:00:00

  • Evidence for multiple introductions of Centaurea stoebe micranthos (spotted knapweed, asteraceae) to North America.

    abstract::Invasive species' success may depend strongly on the genetic resources they maintain through the invasion process. We ask how many introductions have occurred in the North American weed Centaurea stoebe micranthos (Asteraceae), and explore whether genetic diversity and population structure have changed as a result of ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294x.2008.03903.x

    authors: Marrs RA,Sforza R,Hufbauer RA

    更新日期:2008-10-01 00:00:00

  • Does adaptive radiation of a host lineage promote ecological diversity of its bacterial communities? A test using gut microbiota of Anolis lizards.

    abstract::Adaptive radiations provide unique opportunities to test whether and how recent ecological and evolutionary diversification of host species structures the composition of entire bacterial communities. We used 16S rRNA gene sequencing of faecal samples to test for differences in the gut microbiota of six species of Puer...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13796

    authors: Ren T,Kahrl AF,Wu M,Cox RM

    更新日期:2016-10-01 00:00:00

  • Cryptic speciation in two widespread subterranean amphipod genera reflects historical drainage patterns in an ancient landscape.

    abstract::The landscape of the Pilbara region of Western Australia has been relatively unchanged for 100 million years. The ancient river systems of this region might be expected to be sources of isolation and divergence for aquatic species. Hence, the occurrence of widespread groundwater taxa in this landscape offers the oppor...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2006.03123.x

    authors: Finston TL,Johnson MS,Humphreys WF,Eberhard SM,Halse SA

    更新日期:2007-01-01 00:00:00

  • Landscape genetics, historical isolation and cross-Andean gene flow in the wax palm, Ceroxylon echinulatum (Arecaceae).

    abstract::Knowledge of the role of landscapes in shaping genetic connectivity and divergence is essential for understanding patterns of biogeography and diversity. This is particularly relevant for the Andes region, a major biodiversity hotspot of relatively recent origin. We examined the phylogeography and landscape genetics o...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294x.2008.03853.x

    authors: Trénel P,Hansen MM,Normand S,Borchsenius F

    更新日期:2008-08-01 00:00:00

  • Effects of population characteristics and structure on estimates of effective population size in a house sparrow metapopulation.

    abstract::Effective population size (N(e)) is a key parameter to understand evolutionary processes and the viability of endangered populations as it determines the rate of genetic drift and inbreeding. Low Ne can lead to inbreeding depression and reduced population adaptability. In this study, we estimated contemporary N(e) usi...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12770

    authors: Baalsrud HT,Saether BE,Hagen IJ,Myhre AM,Ringsby TH,Pärn H,Jensen H

    更新日期:2014-06-01 00:00:00

  • Genetic diversity of Ranunculus acris L. (Ranunculaceae) populations in relation to species diversity and habitat type in grassland communities.

    abstract::Correlates between genetic diversity at intra- and interpopulation levels and the species diversity in plant communities are rarely investigated. Such correlates may give insights into the effect of local selective forces across different communities on the genetic diversity of local plant populations. This study has ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02115.x

    authors: Odat N,Jetschke G,Hellwig FH

    更新日期:2004-05-01 00:00:00

  • Patterns of genetic diversity and candidate genes for ecological divergence in a homoploid hybrid sunflower, Helianthus anomalus.

    abstract::Natural hybridization accompanied by a shift in niche preference by hybrid genotypes can lead to hybrid speciation. Natural selection may cause the fixation of advantageous alleles in the ecologically diverged hybrids, and the loci experiencing selection should exhibit a reduction in allelic diversity relative to neut...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03557.x

    authors: Sapir Y,Moody ML,Brouillette LC,Donovan LA,Rieseberg LH

    更新日期:2007-12-01 00:00:00

  • Philopatry and within-colony movements in Columbian ground squirrels.

    abstract::Philopatry and dispersal result in selection of habitat locations that may differ in resources and social environment and thus should influence fitness components like survival and reproduction. We examined short-distance movements of young and adult females from natal or previous nesting sites within a colony of Colu...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05219.x

    authors: Arnaud CM,Dobson FS,Murie JO

    更新日期:2012-02-01 00:00:00

  • Long-term natal site-fidelity by immature lemon sharks (Negaprion brevirostris) at a subtropical island.

    abstract::Although many sharks begin their life confined in nursery habitats, it is unknown how rapidly they disperse away from their natal area once they leave the nursery. We examine this issue in immature lemon sharks (Negaprion brevirostris) from the time they leave the nursery (approximately age 3) at a subtropical island ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04289.x

    authors: Chapman DD,Babcock EA,Gruber SH,Dibattista JD,Franks BR,Kessel SA,Guttridge T,Pikitch EK,Feldheim KA

    更新日期:2009-08-01 00:00:00

  • Reconciling patterns of genetic variation with stream structure, earth history and biology in the Australian freshwater fish Craterocephalus stercusmuscarum (Atherinidae).

    abstract::We examined the consequences of barriers, stream architecture and putative dispersal capability on levels of genetic differentiation among populations of the freshwater fish Craterocephalus stercusmuscarum. Seven polymorphic allozyme loci and sequences of a 498-bp fragment of the ATPase 6 mitochondrial DNA (mtDNA) gen...

    journal_title:Molecular ecology

    pub_type: 历史文章,杂志文章

    doi:10.1046/j.1365-294x.2000.01054.x

    authors: McGlashan DJ,Hughes JM

    更新日期:2000-11-01 00:00:00

  • Genetic assignment of recruits reveals short- and long-distance larval dispersal in Pocillopora damicornis on the Great Barrier Reef.

    abstract::Understanding connectivity of coral populations among and within reefs over ecologically significant timescales is essential for developing evidence-based management strategies, including the design of marineprotected areas. Here, we present the first assessment of contemporary connectivity among populations of two Mo...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12539

    authors: Torda G,Lundgren P,Willis BL,van Oppen MJ

    更新日期:2013-12-01 00:00:00

  • Genetic structure of Mesoamerican populations of Big-leaf mahogany (Swietenia macrophylla) inferred from microsatellite analysis.

    abstract::While microsatellites have been used to examine genetic structure in local populations of Neotropical trees, genetic studies based on such high-resolution markers have not been carried out for Mesoamerica as a whole. Here we assess the genetic structure of the Mesoamerican mahogany Swietenia macrophylla King (big-leaf...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01951.x

    authors: Novick RR,Dick CW,Lemes MR,Navarro C,Caccone A,Bermingham E

    更新日期:2003-11-01 00:00:00

  • Hybridization between pollination syndromes as an ecological and evolutionary resource.

    abstract::In plants, pollination syndromes (the correlated presence of many features of relevance to pollination mode, for instance pollination by a particular animal clade) are a striking feature of plant biodiversity, providing great floral phenotypic diversity (Fenster et al. ). Adaptation to a particular animal pollinator p...

    journal_title:Molecular ecology

    pub_type: 评论,新闻

    doi:10.1111/mec.13903

    authors: Cronk Q,Yang JY

    更新日期:2016-12-01 00:00:00

  • Genetic consequences of introducing allopatric lineages of Bluestriped Snapper (Lutjanus kasmira) to Hawaii.

    abstract::A half century ago the State of Hawaii began a remarkable, if unintentional, experiment on the population genetics of introduced species, by releasing 2431 Bluestriped Snappers (Lutjanus kasmira) from the Marquesas Islands in 1958 and 728 conspecifics from the Society Islands in 1961. By 1992 L. kasmira had spread acr...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04535.x

    authors: Gaither MR,Bowen BW,Toonen RJ,Planes S,Messmer V,Earle J,Ross Robertson D

    更新日期:2010-03-01 00:00:00

  • Anthropogenic and natural barriers affect genetic connectivity in an Alpine butterfly.

    abstract::Dispersal is a key biological process serving several functions including connectivity among populations. Habitat fragmentation caused by natural or anthropogenic structures may hamper dispersal, thereby disrupting genetic connectivity. Investigating factors affecting dispersal and gene flow is important in the curren...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15707

    authors: Trense D,Schmidt TL,Yang Q,Chung J,Hoffmann AA,Fischer K

    更新日期:2020-10-27 00:00:00

  • Breaking down barriers in morning glories.

    abstract::One of the most striking and consistent results in speciation genomics is the heterogeneous divergence observed across the genomes of closely related species. This pattern was initially attributed to different levels of gene exchange-with divergence preserved at loci generating a barrier to gene flow but homogenized a...

    journal_title:Molecular ecology

    pub_type: 评论,新闻

    doi:10.1111/mec.15048

    authors: Field DL,Fraïsse C

    更新日期:2019-04-01 00:00:00

  • Amplified fragment length polymorphism versus random amplified polymorphic DNA markers: clonal diversity in Saxifraga cernua.

    abstract::Random amplified polymorphic DNA (RAPD) markers are sensitive to changes in reaction conditions and may express polymorphisms of nongenetic origin. Taxa with variable chromosome numbers are particularly challenging cases, as differences in DNA content may also influence marker reproducibility. We addressed these probl...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.02037.x

    authors: Kjølner S,Såstad SM,Taberlet P,Brochmann C

    更新日期:2004-01-01 00:00:00

  • Copy number variants outperform SNPs to reveal genotype-temperature association in a marine species.

    abstract::Copy number variants (CNVs) are a major component of genotypic and phenotypic variation in genomes. To date, our knowledge of genotypic variation and evolution has largely been acquired by means of single nucleotide polymorphism (SNPs) analyses. Until recently, the adaptive role of structural variants (SVs) and partic...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15565

    authors: Dorant Y,Cayuela H,Wellband K,Laporte M,Rougemont Q,Mérot C,Normandeau E,Rochette R,Bernatchez L

    更新日期:2020-12-01 00:00:00

  • Fire coral clones demonstrate phenotypic plasticity among reef habitats.

    abstract::Clonal populations are often characterized by reduced levels of genotypic diversity, which can translate into lower numbers of functional phenotypes, both of which impede adaptation. Study of partially clonal animals enables examination of the environmental settings under which clonal reproduction is favoured. Here, w...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14165

    authors: Dubé CE,Boissin E,Maynard JA,Planes S

    更新日期:2017-08-01 00:00:00

  • Chloroplast microsatellites and mitochondrial nad1 intron 2 sequences indicate congruent phylogenetic relationships among Swiss stone pine (Pinus cembra), Siberian stone pine (Pinus sibirica), and Siberian dwarf pine (Pinus pumila).

    abstract::We studied the phylogenetic relationships among the three stone pine species, Pinus cembra, P. sibirica, and P. pumila, using chloroplast microsatellites and mitochondrial nad1 intron 2 sequences. The three chloroplast microsatellite loci combined into a total of 18 haplotypes. Fourteen haplotypes were detected in 15 ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2001.01285.x

    authors: Gugerli F,Senn J,Anzidei M,Madaghiele A,Büchler U,Sperisen C,Vendramin GG

    更新日期:2001-06-01 00:00:00

  • Ancient hyaenas highlight the old problem of estimating evolutionary rates.

    abstract::Phylogenetic analyses of ancient DNA data can provide a timeline for evolutionary change even in the absence of fossils. The power to infer the evolutionary rate is, however, highly dependent on the number and age of samples, the information content of the sequence data and the demographic history of the sampled popul...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/mec.12621

    authors: Shapiro B,Ho SY

    更新日期:2014-02-01 00:00:00

  • New evidence for the recent divergence of Devil's Hole pupfish and the plausibility of elevated mutation rates in endangered taxa.

    abstract::Sağlam et al. recently argued that the Devil's Hole pupfish (Cyprinodon diabolis), a conservation icon with the smallest known species range, was isolated 60 kya based on a new genomic data set. If true, this would be a radically long timescale for any species to persist at population sizes <500 individuals, in contra...

    journal_title:Molecular ecology

    pub_type: 评论,新闻

    doi:10.1111/mec.14404

    authors: Martin CH,Höhna S

    更新日期:2018-02-01 00:00:00

  • Comparison of gene expression in segregating families identifies genes and genomic regions involved in a novel adaptation, zinc hyperaccumulation.

    abstract::One of the challenges of comparative genomics is to identify specific genetic changes associated with the evolution of a novel adaptation or trait. We need to be able to disassociate the genes involved with a particular character from all the other genetic changes that take place as lineages diverge. Here we show that...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2006.02981.x

    authors: Filatov V,Dowdle J,Smirnoff N,Ford-Lloyd B,Newbury HJ,Macnair MR

    更新日期:2006-09-01 00:00:00

  • Population genetic structure and diversity of the Apennine endemic stream frog, Rana italica--insights on the Pleistocene evolutionary history of the Italian peninsular biota.

    abstract::For most species in the Western Palaearctic region, southern Mediterranean peninsulas have been identified as major Quaternary refugia and hotspots of intraspecific diversity, and thus, as areas of particular relevance for the conservation of the evolutionary potential. We analysed the patterns of geographical variati...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2008.03870.x

    authors: Canestrelli D,Cimmaruta R,Nascetti G

    更新日期:2008-09-01 00:00:00

  • Comparative riverscape genetics reveals reservoirs of genetic diversity for conservation and restoration of Great Plains fishes.

    abstract::We used comparative landscape genetics to examine the relative roles of historical events, intrinsic traits and landscape factors in determining the distribution of genetic diversity of river fishes across the North American Great Plains. Spatial patterns of diversity were overlaid on a patch-based graphical model and...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12970

    authors: Osborne MJ,Perkin JS,Gido KB,Turner TF

    更新日期:2014-12-01 00:00:00

  • Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes.

    abstract::Coral reefs belong to the most diverse ecosystems on our planet. The diversity in coloration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomac...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13968

    authors: Stieb SM,Cortesi F,Sueess L,Carleton KL,Salzburger W,Marshall NJ

    更新日期:2017-03-01 00:00:00

  • QTL linkage mapping of wing length in zebra finch using genome-wide single nucleotide polymorphisms markers.

    abstract::Avian wing length is an important trait that covaries with the ecology and migratory behaviour of a species and tends to change rapidly when the conditions are altered. Long-distance migrants typically have longer wings than short-distance migrants and sedentary species, and long-winged species also tend to be more di...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05365.x

    authors: Schielzeth H,Forstmeier W,Kempenaers B,Ellegren H

    更新日期:2012-01-01 00:00:00