Reconciling patterns of genetic variation with stream structure, earth history and biology in the Australian freshwater fish Craterocephalus stercusmuscarum (Atherinidae).

Abstract:

:We examined the consequences of barriers, stream architecture and putative dispersal capability on levels of genetic differentiation among populations of the freshwater fish Craterocephalus stercusmuscarum. Seven polymorphic allozyme loci and sequences of a 498-bp fragment of the ATPase 6 mitochondrial DNA (mtDNA) gene were used to assess patterns of genetic variation among 16 populations from upland and lowland streams of five drainages in northern Queensland, Australia. Concordant patterns at both genetic markers revealed that there were significant levels of genetic subdivision among all populations, while an analysis of molecular variation showed that the distribution of genetic diversity was not consistent with contemporary drainage structure. There were reciprocally monophyletic mtDNA clades and fixed or large frequency differences at allozyme loci either side of instream barriers such as waterfalls. This implied barriers were effective in restricting gene flow between upland and lowland populations separated by waterfalls. However, there were two genetically distinct groups in upland areas, even within the same subcatchment, as well as high levels of genetic subdivision among lowland populations, suggesting barriers alone do not explain the patterns of genetic diversity. The data revealed a complex phylogeographic pattern, which we interpreted to be the result of one or more invasion events of independent lineages to different sections of each drainage, possibly mediated by well documented geomorphological changes. Our results highlight the importance of earth structure and history in shaping population genetic structure in stream organisms where dispersal capability may be limited, and reveal that the contemporary structure of drainages is not necessarily a good indicator of genetic relationships among populations.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

McGlashan DJ,Hughes JM

doi

10.1046/j.1365-294x.2000.01054.x

subject

Has Abstract

pub_date

2000-11-01 00:00:00

pages

1737-51

issue

11

eissn

0962-1083

issn

1365-294X

pii

mec1054

journal_volume

9

pub_type

历史文章,杂志文章
  • The geographical and environmental determinants of genetic diversity for four alpine conifers of the European Alps.

    abstract::Climate is one of the most important drivers of local adaptation in forest tree species. Standing levels of genetic diversity and structure within and among natural populations of forest trees are determined by the interplay between climatic heterogeneity and the balance between selection and gene flow. To investigate...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12043

    authors: Mosca E,Eckert AJ,Di Pierro EA,Rocchini D,La Porta N,Belletti P,Neale DB

    更新日期:2012-11-01 00:00:00

  • Phylogeography of a post-glacial colonizer: Microtus longicaudus (Rodentia: muridae).

    abstract::The molecular phylogeography of Microtus longicaudus was investigated with DNA sequences of the mitochondrial cytochrome b gene. We used phylogenetic and pairwise distance methods to reconstruct the history of the species with particular emphasis on the Pacific Northwest. Genetic variation across the species was consi...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2000.00846.x

    authors: Conroy CJ,Cook JA

    更新日期:2000-02-01 00:00:00

  • European phylogeography of the epiphytic lichen fungus Lobaria pulmonaria and its green algal symbiont.

    abstract::In lichen symbiosis, fungal and algal partners form close associations, often codispersed by vegetative propagules. Due to the particular interdependence, processes such as colonization, dispersal or genetic drift are expected to result in congruent patterns of genetic structure in the symbionts. To study the populati...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12051

    authors: Widmer I,Dal Grande F,Excoffier L,Holderegger R,Keller C,Mikryukov VS,Scheidegger C

    更新日期:2012-12-01 00:00:00

  • The relative contributions of seed and pollen dispersal to gene flow and genetic diversity in seedlings of a tropical palm.

    abstract::Seed and pollen dispersal shape patterns of gene flow and genetic diversity in plants. Pollen is generally thought to travel longer distances than seeds, but seeds determine the ultimate location of gametes. Resolving how interactions between these two dispersal processes shape microevolutionary processes is a long-st...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14768

    authors: Browne L,Ottewell K,Sork VL,Karubian J

    更新日期:2018-08-01 00:00:00

  • QTL mapping of freezing tolerance: links to fitness and adaptive trade-offs.

    abstract::Local adaptation, defined as higher fitness of local vs. nonlocal genotypes, is commonly identified in reciprocal transplant experiments. Reciprocally adapted populations display fitness trade-offs across environments, but little is known about the traits and genes underlying fitness trade-offs in reciprocally adapted...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12862

    authors: Oakley CG,Ågren J,Atchison RA,Schemske DW

    更新日期:2014-09-01 00:00:00

  • Using probability modelling and genetic parentage assignment to test the role of local mate availability in mating system variation.

    abstract::The formal testing of mating system theories with empirical data is important for evaluating the relative importance of different processes in shaping mating systems in wild populations. Here, we present a generally applicable probability modelling framework to test the role of local mate availability in determining a...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05252.x

    authors: Blyton MD,Banks SC,Peakall R,Lindenmayer DB

    更新日期:2012-02-01 00:00:00

  • The comparative genomic landscape of adaptive radiation in crater lake cichlid fishes.

    abstract::Factors ranging from ecological opportunity to genome composition might explain why only some lineages form adaptive radiations. While being rare, particular systems can provide natural experiments within an identical ecological setting where species numbers and phenotypic divergence in two closely related lineages ar...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15774

    authors: Xiong P,Hulsey CD,Fruciano C,Wong WY,Nater A,Kautt AF,Simakov O,Pippel M,Kuraku S,Meyer A,Franchini P

    更新日期:2020-12-11 00:00:00

  • Past and future demographic dynamics of alpine species: limited genetic consequences despite dramatic range contraction in a plant from the Spanish Sierra Nevada.

    abstract::Anthropogenic global climate change is expected to cause severe range contractions among alpine plants. Alpine areas in the Mediterranean region are of special concern because of the high abundance of endemic species with narrow ranges. This study combined species distribution models, population structure analyses and...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12383

    authors: Blanco-Pastor JL,Fernández-Mazuecos M,Vargas P

    更新日期:2013-08-01 00:00:00

  • Microsatellite analysis of kinkajou social organization.

    abstract::Kinkajou social groups generally consist of one adult female, two males, one subadult and one juvenile. Based on analysis of variation in 11 microsatellite loci, we assess the degree of kinship within and between four social groups totaling 25 kinkajous. We use exclusion and likelihood analyses to assign parents for s...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2000.00921.x

    authors: Kays RW,Gittleman JL,Wayne RK

    更新日期:2000-06-01 00:00:00

  • Habitat differentiation vs. isolation-by-distance: the genetic population structure of Elymus athericus in European salt marshes.

    abstract::We investigated genetic differentiation among populations of the clonal grass Elymus athericus, a common salt-marsh species occurring along the Wadden Sea coast of Europe. While E. athericus traditionally occurs in the high salt marsh, it recently also invaded lower parts of the marsh. In one of the first analyses of ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01706.x

    authors: Bockelmann AC,Reusch TB,Bijlsma R,Bakker JP

    更新日期:2003-02-01 00:00:00

  • Chloroplast microsatellites and mitochondrial nad1 intron 2 sequences indicate congruent phylogenetic relationships among Swiss stone pine (Pinus cembra), Siberian stone pine (Pinus sibirica), and Siberian dwarf pine (Pinus pumila).

    abstract::We studied the phylogenetic relationships among the three stone pine species, Pinus cembra, P. sibirica, and P. pumila, using chloroplast microsatellites and mitochondrial nad1 intron 2 sequences. The three chloroplast microsatellite loci combined into a total of 18 haplotypes. Fourteen haplotypes were detected in 15 ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2001.01285.x

    authors: Gugerli F,Senn J,Anzidei M,Madaghiele A,Büchler U,Sperisen C,Vendramin GG

    更新日期:2001-06-01 00:00:00

  • Sexual conflict and the maintenance of genetic variation in natural populations.

    abstract::Understanding the factors that maintain genetic variation in natural populations is a foundational goal of evolutionary biology. To this end, population geneticists have developed a variety of models that can produce stable polymorphisms. In one of the earliest models, Owen () demonstrated that differences in selectio...

    journal_title:Molecular ecology

    pub_type: 评论,新闻

    doi:10.1111/mec.14787

    authors: Meisel RP

    更新日期:2018-09-01 00:00:00

  • Next-generation sequencing technologies for environmental DNA research.

    abstract::Since 2005, advances in next-generation sequencing technologies have revolutionized biological science. The analysis of environmental DNA through the use of specific gene markers such as species-specific DNA barcodes has been a key application of next-generation sequencing technologies in ecological and environmental ...

    journal_title:Molecular ecology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-294X.2012.05538.x

    authors: Shokralla S,Spall JL,Gibson JF,Hajibabaei M

    更新日期:2012-04-01 00:00:00

  • Population genetic structure and diversity of the Apennine endemic stream frog, Rana italica--insights on the Pleistocene evolutionary history of the Italian peninsular biota.

    abstract::For most species in the Western Palaearctic region, southern Mediterranean peninsulas have been identified as major Quaternary refugia and hotspots of intraspecific diversity, and thus, as areas of particular relevance for the conservation of the evolutionary potential. We analysed the patterns of geographical variati...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2008.03870.x

    authors: Canestrelli D,Cimmaruta R,Nascetti G

    更新日期:2008-09-01 00:00:00

  • Habitat fragmentation in coastal southern California disrupts genetic connectivity in the cactus wren (Campylorhynchus brunneicapillus).

    abstract::Achieving long-term persistence of species in urbanized landscapes requires characterizing population genetic structure to understand and manage the effects of anthropogenic disturbance on connectivity. Urbanization over the past century in coastal southern California has caused both precipitous loss of coastal sage s...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13176

    authors: Barr KR,Kus BE,Preston KL,Howell S,Perkins E,Vandergast AG

    更新日期:2015-05-01 00:00:00

  • Sculpin hybrid zones: natural laboratories for the early stages of speciation.

    abstract::Firmly rooted as we are in the genomic era, it can seem incredible that as recently as 1974, Lewontin declared, 'we know virtually nothing about the genetic changes that occur in species formation'. To the contrary, we now know the genetic architecture of phenotypic differences and reproductive isolation between speci...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/j.1365-294X.2009.04209.x

    authors: Sweigart A

    更新日期:2009-06-01 00:00:00

  • How quantitative is metabarcoding: A meta-analytical approach.

    abstract::Metabarcoding has been used in a range of ecological applications such as taxonomic assignment, dietary analysis and the analysis of environmental DNA. However, after a decade of use in these applications there is little consensus on the extent to which proportions of reads generated corresponds to the original propor...

    journal_title:Molecular ecology

    pub_type: 杂志文章,meta分析

    doi:10.1111/mec.14920

    authors: Lamb PD,Hunter E,Pinnegar JK,Creer S,Davies RG,Taylor MI

    更新日期:2019-01-01 00:00:00

  • Contrasting signals from multiple markers illuminate population connectivity in a marine fish.

    abstract::Recent advances in molecular biology and bioinformatics have helped to unveil striking and previously unrecognized patterns of geographic genetic structure in marine populations. Largely driven by the pressing needs of fisheries management and conservation, studies on marine fish populations have played a pivotal role...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04404.x

    authors: Sala-Bozano M,Ketmaier V,Mariani S

    更新日期:2009-12-01 00:00:00

  • Gene expression profiling reveals deep-sea coral response to the Deepwater Horizon oil spill.

    abstract::Deep-sea coral communities are key components of the Gulf of Mexico ecosystem and were adversely affected by the Deepwater Horizon (DWH) oil spill. Coral colonies exposed to oil and dispersant exhibited mortality, damage and physiological signatures of stress. Understanding how corals respond to oil and dispersant exp...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14847

    authors: DeLeo DM,Herrera S,Lengyel SD,Quattrini AM,Kulathinal RJ,Cordes EE

    更新日期:2018-10-01 00:00:00

  • How to use molecular marker data to measure evolutionary parameters in wild populations.

    abstract::Estimating the genetic basis of phenotypic traits and the selection pressures acting on them are central to our understanding of the evolution and conservation of wild populations. However, obtaining such evolutionary-related parameters is not an easy task as it requires accurate information on both relatedness among ...

    journal_title:Molecular ecology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-294X.2005.02561.x

    authors: Garant D,Kruuk LE

    更新日期:2005-06-01 00:00:00

  • Closely coupled evolutionary history of ecto- and endosymbionts from two distantly related animal phyla.

    abstract::The level of integration between associated partners can range from ectosymbioses to extracellular and intracellular endosymbioses, and this range has been assumed to reflect a continuum from less intimate to evolutionarily highly stable associations. In this study, we examined the specificity and evolutionary history...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13554

    authors: Zimmermann J,Wentrup C,Sadowski M,Blazejak A,Gruber-Vodicka HR,Kleiner M,Ott JA,Cronholm B,De Wit P,Erséus C,Dubilier N

    更新日期:2016-07-01 00:00:00

  • Genetic structure and distinctness of Apis mellifera L. populations from the Canary Islands.

    abstract::The genetic structure of Apis mellifera populations from the Canary Islands has been assessed by mitochondrial (restriction fragment length polymorphisms of the intergenic transfer RNAleu-COII region) and nuclear (microsatellites) studies. These populations show a low level of genetic variation in terms of average num...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2001.01303.x

    authors: De la Rúa P,Galián J,Serrano J,Moritz RF

    更新日期:2001-07-01 00:00:00

  • Isolation by distance among California sea lion populations in Mexico: redefining management stocks.

    abstract::Understanding the spatial structure of a population is critical for effective assessment and management. However, direct observation of spatial dynamics is generally difficult, particularly for marine mammals. California sea lions (Zalophus californianus) are polygynous pinnipeds distributed along the Pacific coast of...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04093.x

    authors: González-Suárez M,Flatz R,Aurioles-Gamboa D,Hedrick PW,Gerber LR

    更新日期:2009-03-01 00:00:00

  • Rapid genetic adaptation precedes the spread of an exotic plant species.

    abstract::Human activities have increasingly introduced plant species far outside their native ranges under environmental conditions that can strongly differ from those originally met. Therefore, before spreading, and potentially causing ecological and economical damage, non-native species may rapidly evolve. Evidence of geneti...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12683

    authors: Vandepitte K,de Meyer T,Helsen K,van Acker K,Roldán-Ruiz I,Mergeay J,Honnay O

    更新日期:2014-05-01 00:00:00

  • Extremely high molecular diversity within the East Asian nematode Caenorhabditis sp. 5.

    abstract::Most relatives of the self-fertilizing hermaphroditic nematode model organism Caenorhabditis elegans reproduce via obligate outbreeding between males and females, which also represents the ancestral mode of reproduction within the genus. However, little is known about the scope of genetic diversity and differentiation...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04862.x

    authors: Wang GX,Ren S,Ren Y,Ai H,Cutter AD

    更新日期:2010-11-01 00:00:00

  • Long-distance gene flow and cross-Andean dispersal of lowland rainforest bees (Apidae: Euglossini) revealed by comparative mitochondrial DNA phylogeography.

    abstract::Euglossine bees (Apidae; Euglossini) exclusively pollinate hundreds of orchid species and comprise up to 25% of bee species richness in neotropical rainforests. As one of the first studies of comparative phylogeography in a neotropical insect group, we performed a mitochondrial DNA (mtDNA)-based analysis of 14 eugloss...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02374.x

    authors: Dick CW,Roubik DW,Gruber KF,Bermingham E

    更新日期:2004-12-01 00:00:00

  • The toad's warts: Discordance creates bumpy expectations of mitochondrial-nuclear evolution between species.

    abstract::Discordance between the mitochondrial and nuclear genomes is a prevalent phenomenon in nature, in which the underlying processes responsible are considered to be important in shaping genetic variation in natural populations. Among the evolutionary processes that best explain such genomic mismatches incomplete lineage ...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/mec.15568

    authors: Streicher JW,Day JJ

    更新日期:2020-09-01 00:00:00

  • The genetic legacy of polyploid Bolivian Daphnia: the tropical Andes as a source for the North and South American D. pulicaria complex.

    abstract::We investigated genetic variation in asexual polyploid members of the water flea Daphnia pulex complex from a set of 12 Bolivian high-altitude lakes. We used nuclear microsatellite markers to study genetic relationships among all encountered multilocus genotypes, and combined this with a phylogenetic approach using DN...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03679.x

    authors: Mergeay J,Aguilera X,Declerck S,Petrusek A,Huyse T,De Meester L

    更新日期:2008-04-01 00:00:00

  • Dispersal limitations and historical factors determine the biogeography of specialized terrestrial protists.

    abstract::Recent studies show that soil eukaryotic diversity is immense and dominated by micro-organisms. However, it is unclear to what extent the processes that shape the distribution of diversity in plants and animals also apply to micro-organisms. Major diversification events in multicellular organisms have often been attri...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15117

    authors: Singer D,Mitchell EAD,Payne RJ,Blandenier Q,Duckert C,Fernández LD,Fournier B,Hernández CE,Granath G,Rydin H,Bragazza L,Koronatova NG,Goia I,Harris LI,Kajukało K,Kosakyan A,Lamentowicz M,Kosykh NP,Vellak K,Lara E

    更新日期:2019-06-01 00:00:00

  • Some like it toxic.

    abstract::Humans are notorious for disturbing terrestrial ecosystems worldwide, especially those that are in close proximity to urban areas. This disturbance has involved the accumulation of various types of chemical pollutants, of either agricultural or industrial origins, in both soil and water ecosystems. Pollutants have som...

    journal_title:Molecular ecology

    pub_type: 评论,新闻

    doi:10.1111/j.1365-294x.2011.05186.x

    authors: Corradi N,Charest C

    更新日期:2011-08-01 00:00:00