Investigating the cause of the alkaline transition of phytocyanins.

Abstract:

:The phytocyanins are a family of plant cupredoxins that have been subdivided into the stellacyanins, plantacyanins, and uclacyanins. All of these proteins possess the typical type 1 His(2)Cys equatorial ligand set at their mononuclear copper sites, but the stellacyanins have an axial Gln ligand in place of the weakly coordinated Met of the plantacyanins, uclacyanins, and most other cupredoxins. The stellacyanins exhibit altered visible, EPR, and paramagnetic (1)H NMR spectra at elevated pH values and also modified reduction potentials. This alkaline transition occurs with a pK(a) of approximately 10 [Dennison, C., Lawler, A. T. (2001) Biochemistry 40, 3158-3166]. In this study we demonstrate that the alkaline transition has a similar influence on the visible, EPR, and paramagnetic NMR spectra of cucumber basic protein (CBP), which is a plantacyanin. The mutation of the axial Gln95 ligand into a Met in umecyanin (UMC), the stellacyanin from horseradish roots, and the axial Met89 into a Gln in CBP have very limited, yet similar, influence on the pK(a) for the alkaline transition as judged from alterations in visible spectra. The complete removal of the axial ligand in the Met89Val variant of CBP results in a slightly larger decrease in the pK(a) for this effect, but similar spectral alterations are still observed at elevated pH. Thus, the axial Gln ligand is not the cause of the alkaline transition in Cu(II) stellacyanins, and alterations in the active site structures of the phytocyanins have a limited effect on this feature. The conserved Lys residue found adjacent to the axial ligand in the sequences of all phytocyanins, and implicated as the trigger for the alkaline transition, has been mutated to an Arg in UMC. The influence of increasing pH on the spectroscopic properties of Lys96Arg UMC is almost identical to those of the wild type protein, and thus, this residue is not responsible for the alkaline transition. However, a positively charged residue in this position seems to be important for the correct folding of UMC. Other possible triggers for the effects seen in the phytocyanins at elevated pH are discussed along with the relevance of the alkaline transition.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Harrison MD,Yanagisawa S,Dennison C

doi

10.1021/bi048256v

subject

Has Abstract

pub_date

2005-03-01 00:00:00

pages

3056-64

issue

8

eissn

0006-2960

issn

1520-4995

journal_volume

44

pub_type

杂志文章
  • Quantitative understanding of the energy transfer between fluorescent proteins connected via flexible peptide linkers.

    abstract::The fusion of different protein domains via peptide linkers is a powerful, modular approach to obtain proteins with new functions. A detailed understanding of the conformational behavior of peptide linkers is important for applications such as fluorescence resonance energy transfer (FRET)-based sensor proteins and mul...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061288t

    authors: Evers TH,van Dongen EM,Faesen AC,Meijer EW,Merkx M

    更新日期:2006-11-07 00:00:00

  • Intrinsic flexibility of West Nile virus protease in solution characterized using small-angle X-ray scattering.

    abstract::West Nile virus (WNV) is a mosquito-borne flavivirus with a rapidly expanding global distribution. Infection can cause severe neurological disease and fatality in humans. Efforts are ongoing to develop antiviral drugs that inhibit the WNV protease, a viral enzyme required for polyprotein processing. Unfortunately, lit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400782w

    authors: Garces AP,Watowich SJ

    更新日期:2013-10-01 00:00:00

  • Structure-function relationships of the Escherichia coli ATP synthase probed by trypsin digestion.

    abstract::Trypsin cleavage has been used to probe structure-function relationships of the Escherichia coli ATP synthase (ECF1F0). Trypsin cleaved all five subunits, alpha, beta, gamma, delta, and epsilon, in isolated ECF1. Cleavage of the alpha subunit involved the removal of the N-terminal 15 residues, the beta subunit was cle...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00402a016

    authors: Gavilanes-Ruiz M,Tommasino M,Capaldi RA

    更新日期:1988-01-26 00:00:00

  • Expression, purification, and crystal structure determination of recombinant human epidermal-type fatty acid binding protein.

    abstract::We describe the crystal structure of human epidermal-type fatty acid binding protein (E-FABP) that was recently found to be highly upregulated in human psoriatic keratinocytes. To characterize E-FABP with respect to ligand-binding properties and tertiary structure, we cloned the respective cDNA, overexpressed the prot...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990305u

    authors: Hohoff C,Börchers T,Rüstow B,Spener F,van Tilbeurgh H

    更新日期:1999-09-21 00:00:00

  • Electrophoretic mobilities and diffusion coefficients of hemoglobin at high pH.

    abstract::Diffusion studies by photon correlation of scattered laser light confirm the dissociation of the tetrameric form of human carboxyhemoglobin to dimers above pH 10 and provide new estimates of the subunit dissociation equilibrium constants in this pH range. Electrophoretic light-scattering experiments under the same con...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00616a014

    authors: Haas DD,Ware BR

    更新日期:1978-11-14 00:00:00

  • Detailed kinetic analysis of a family 52 glycoside hydrolase: a beta-xylosidase from Geobacillus stearothermophilus.

    abstract::Geobacillus stearothermophilus T-6 encodes for a beta-xylosidase (XynB2) from family 52 of glycoside hydrolases that was previously shown to hydrolyze its substrate with net retention of the anomeric configuration. XynB2 significantly prefers substrates with xylose as the glycone moiety and exhibits a typical bell-sha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034505o

    authors: Bravman T,Zolotnitsky G,Belakhov V,Shoham G,Henrissat B,Baasov T,Shoham Y

    更新日期:2003-09-09 00:00:00

  • Homogeneity and variability in the structure of azurin molecules studied by fluorescence decay and circular polarization.

    abstract::The fluorescence decay of apoazurin derived from Pseudomonas aeruginosa is monoexponential. By this criterion the population of molecules of apoazurin is homogeneous. The emission anisotropy factor and the absorption anisotropy factor at the red edge of the absorption band assume similar values, showing that the trypt...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00680a018

    authors: Grinvald A,Schlessinger J,Pecht I,Steinberg IZ

    更新日期:1975-05-06 00:00:00

  • Crystal structures of two potent nonamidine inhibitors bound to factor Xa.

    abstract::There has been intense interest in the development of factor Xa inhibitors for the treatment of thrombotic diseases. Our laboratory has developed a series of novel non-amidine inhibitors of factor Xa. This paper presents two crystal structures of compounds from this series bound to factor Xa. The first structure is de...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0264061

    authors: Adler M,Kochanny MJ,Ye B,Rumennik G,Light DR,Biancalana S,Whitlow M

    更新日期:2002-12-31 00:00:00

  • Isoforms of the EP3 subtype of human prostaglandin E2 receptor transduce both intracellular calcium and cAMP signals.

    abstract::The EP3 subtype of prostaglandin E2 receptor transduces diverse physiological responses in mammalian tissues through signaling pathways coupled to heterotrimeric G proteins. Distinct cDNA clones encoding five isoforms of the EP3 receptor were isolated from a human uterus cDNA library. The human EP3 receptor isoforms d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00252a016

    authors: An S,Yang J,So SW,Zeng L,Goetzl EJ

    更新日期:1994-12-06 00:00:00

  • Cold adaptation of enzyme reaction rates.

    abstract::A major issue for organisms living at extreme temperatures is to preserve both stability and activity of their enzymes. Cold-adapted enzymes generally have a reduced thermal stability, to counteract freezing, and show a lower enthalpy and a more negative entropy of activation compared to mesophilic and thermophilic ho...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801177k

    authors: Bjelic S,Brandsdal BO,Aqvist J

    更新日期:2008-09-23 00:00:00

  • Phosphoprotein particles: calcium and inorganic phosphate binding structures.

    abstract::Phosphoprotein particles were isolated in their native state from the physiological fluid of the estuarine clam Rangia cuneata , and the characteristics of the mineral ion-protein complex which constitutes the native particle were investigated by using mineral ion binding and mineral ion exchange techniques. The parti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00302a017

    authors: Marsh ME,Sass RL

    更新日期:1984-03-27 00:00:00

  • Kinetic mechanism for the flipping and excision of 1,N(6)-ethenoadenine by AlkA.

    abstract::Escherichia coli 3-methyladenine DNA glycosylase II (AlkA), an adaptive response glycosylase with a broad substrate range, initiates base excision repair by flipping a lesion out of the DNA duplex and hydrolyzing the N-glycosidic bond. We used transient and steady state kinetics to determine the minimal mechanism for ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi501356x

    authors: Taylor EL,O'Brien PJ

    更新日期:2015-01-27 00:00:00

  • Gene structure and chromosomal localization of plasma kallikrein.

    abstract::Plasma kallikrein (Fletcher factor) is a hepatic serine proteinase that participated in the early phase of blood coagulation. From two genomic libraries, we succeeded to isolate four overlapping clones representing the entire rat plasma kallikrein gene. Using selective DNA sequencing, polymerase chain reactions, and r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00220a027

    authors: Beaubien G,Rosinski-Chupin I,Mattei MG,Mbikay M,Chrétien M,Seidah NG

    更新日期:1991-02-12 00:00:00

  • Rates of oxygen and hydrogen exchange as indicators of TPQ cofactor orientation in amine oxidases.

    abstract::This study presents the first detailed examination by resonance Raman (RR) spectroscopy of the rates of solvent exchange for the C5 and C3 positions of the TPQ cofactor in several wild-type copper-containing amine oxidases and mutants of the amine oxidase from Hansenula polymorpha (HPAO). On the basis of crystal struc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011685y

    authors: Green EL,Nakamura N,Dooley DM,Klinman JP,Sanders-Loehr J

    更新日期:2002-01-15 00:00:00

  • Structure of a mouse immunoglobulin G that lacks the entire CH1 domain: protein sequencing and small-angle X-ray scattering studies.

    abstract::The structure of a short-chain IgG2a antibody, which is a member of the family of mouse anti-dansyl switch variant antibodies with identical variable regions but different heavy-chain constant regions [Dangl, J.L., Parks, D. R., Oi, V. T., & Herzenberg, L. A. (1982) Cytometry 2, 395-401], is reported. Amino acid seque...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00476a013

    authors: Igarashi T,Sato M,Katsube Y,Takio K,Tanaka T,Nakanishi M,Arata Y

    更新日期:1990-06-19 00:00:00

  • Mechanism of yeast cytochrome b2 action. I. Thermodynamics and relaxation kinetics of the interaction between cytochrome b2 and oxalate.

    abstract::Oxalate is the strongest known inhibitor of yeast cytochrome b2 activity. We have used spectrophotometric titration, temperature-jump relaxation, and calorimetry in an investigation of the interaction between enzyme and inhibitor. The titration data are consistent with noncooperative binding to one site per subunit. T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00647a002

    authors: Thusius D,Blazy B,Baudras A

    更新日期:1976-01-27 00:00:00

  • Enhanced protein thermostability by Ala-->Aib replacement.

    abstract::The introduction into peptide chains of alpha-aminoisobutyric acid (Aib) has proven to stabilize the helical structure in short peptides by restricting the available range of polypeptide backbone conformations. In order to evaluate the potential stabilizing effect of Aib at the protein level, we have studied the confo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971937o

    authors: De Filippis V,De Antoni F,Frigo M,Polverino de Laureto P,Fontana A

    更新日期:1998-02-10 00:00:00

  • Syntaxin 2 and SNAP-23 are required for regulated surfactant secretion.

    abstract::The secretion of lung surfactant in alveolar type II cells is a complex process involving the fusion of lamellar bodies with the plasma membrane. This process is somewhat different from the exocytosis of hormones and neurotransmitters. For example, it is a relatively slower process, and lamellar bodies are very large ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi036338y

    authors: Abonyo BO,Gou D,Wang P,Narasaraju T,Wang Z,Liu L

    更新日期:2004-03-30 00:00:00

  • Orientation-conserved transfer of symmetric Krebs cycle intermediates in mammalian tissue.

    abstract::Metabolism of [2-13C]-, [3-13C]-, and [1,2,3-13C]propionate in perfused rat livers and [2-13C]-acetate in perfused rat hearts has been examined in tissue extracts by 13C NMR. Label from [2-13C]-propionate was preferentially incorporated into the C2 carbon of lactate, alanine, and aspartate in liver tissue while label ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00186a029

    authors: Sherry AD,Sumegi B,Miller B,Cottam GL,Gavva S,Jones JG,Malloy CR

    更新日期:1994-05-24 00:00:00

  • Interaction of the low-affinity receptor CD23/Fc epsilonRII lectin domain with the Fc epsilon3-4 fragment of human immunoglobulin E.

    abstract::CD23/Fc epsilonRII, the low-affinity receptor for IgE, is a multifunctional protein of importance in blood cell development and the immune system. We have studied the interaction of CD23 with IgE in solution using hydrodynamic methods applied to recombinant fragments of both ligands: sCD23, corresponding to the solubl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961231e

    authors: Shi J,Ghirlando R,Beavil RL,Beavil AJ,Keown MB,Young RJ,Owens RJ,Sutton BJ,Gould HJ

    更新日期:1997-02-25 00:00:00

  • The photoactivated PYP domain of Rhodospirillum centenum Ppr accelerates the recovery of the bacteriophytochrome domain after white light illumination.

    abstract::Ppr from the purple phototrophic bacterium, Rhodospirillum centenum (also known as Rhodocista centenaria), is a hybrid of photoactive yellow protein (PYP), bacteriophytochrome (Bph), and histidine kinase (HK) domains. The holo-Ppr (containing both chromophores) exhibits characteristic absorption maxima at 435 nm due t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700616j

    authors: Kyndt JA,Fitch JC,Meyer TE,Cusanovich MA

    更新日期:2007-07-17 00:00:00

  • Multiple binding with identical linkage: a mechanism that explains the effect of lipoprotein(a) on fibrinolysis.

    abstract::We have previously shown that both recombinant apo(a) and native Lp(a) inhibit the binding of Glu-plasminogen to fibrin surfaces [Fleury & Anglés-Cano (1991) Biochemistry 30, 7630-7638; Rouy et al. (1992) Biochemistry 31, 6332-6339]. The aim of the present study was to characterize the mechanism of this inhibition and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00041a011

    authors: Hervio L,Durlach V,Girard-Globa A,Anglés-Cano E

    更新日期:1995-10-17 00:00:00

  • Insights into the reaction mechanism of the prolyl-acyl carrier protein oxidase involved in anatoxin-a and homoanatoxin-a biosynthesis.

    abstract::Anatoxin-a and homoanatoxin-a are two potent cyanobacterial neurotoxins. We recently reported the identification of the gene cluster responsible for the biosynthesis of these toxins as well as the in-vitro reconstitution of the first steps of this biosynthesis. We now report experimental evidence supporting the propos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200892a

    authors: Mann S,Lombard B,Loew D,Méjean A,Ploux O

    更新日期:2011-08-23 00:00:00

  • tRNA and the guanosinetriphosphatase activity of elongation factor Tu.

    abstract::Different sites of the tRNA molecule influence the activity of the elongation factor Tu (EF-Tu) center for GTP hydrolysis [Parlato, G., Pizzano, R., Picone, D., Guesnet, J., Fasano, O., & Parmeggiani, A. (1983) J. Biol. Chem. 258, 995-1000]. Continuing these studies, we have investigated some aspects of (a) the effect...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00427a044

    authors: Swart GW,Parmeggiani A

    更新日期:1989-01-10 00:00:00

  • Additive transfer free energies of the peptide backbone unit that are independent of the model compound and the choice of concentration scale.

    abstract::With knowledge of individual transfer free energies of chemical groups that become newly exposed on protein denaturation and assuming the group transfer free energy contributions are additive, it should be possible to predict the stability of a protein in the presence of denaturant. Unfortunately, several unresolved i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035908r

    authors: Auton M,Bolen DW

    更新日期:2004-02-10 00:00:00

  • Cholinergic binding sites on the pentameric acetylcholine receptor of Torpedo californica.

    abstract::The binding of agonists, antagonists, and the acetylcholinesterase inhibitor, eserine, to the nicotinic acetylcholine receptor from Torpedo californica has been monitored by the fluorescence changes of two extrinsic probes that have been covalently attached to the receptor protein. Although both probes, 5-(iodoacetami...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00084a031

    authors: Dunn SM,Raftery MA

    更新日期:1993-08-24 00:00:00

  • Cysteine pKa depression by a protonated glutamic acid in human DJ-1.

    abstract::Human DJ-1, a disease-associated protein that protects cells from oxidative stress, contains an oxidation-sensitive cysteine (C106) that is essential for its cytoprotective activity. The origin of C106 reactivity is obscure, due in part to the absence of an experimentally determined p K a value for this residue. We ha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800282d

    authors: Witt AC,Lakshminarasimhan M,Remington BC,Hasim S,Pozharski E,Wilson MA

    更新日期:2008-07-15 00:00:00

  • Quantitative analysis of binding of single-stranded DNA by Escherichia coli DnaB helicase and the DnaB x DnaC complex.

    abstract::DnaB helicase is responsible for unwinding duplex DNA during chromosomal DNA replication and is an essential component of the DNA replication apparatus in Escherichia coli. We have analyzed the mechanism of binding of single-stranded DNA (ssDNA) by the DnaB x DnaC complex and DnaB helicase. Binding of ssDNA to DnaB he...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060118d

    authors: Biswas SB,Biswas-Fiss EE

    更新日期:2006-09-26 00:00:00

  • Affinity selection of chemically modified proteins: role of lysyl residues in the binding of calmodulin to calcineurin.

    abstract::In affinity selection, calcineurin selects from a population of randomly modified calmodulins those species with which it prefers to interact. The method shows that acetylation of lysines affects calmodulin so as to interfere with its ability to interact with calcineurin. Monoacetylation of any lysine of calmodulin re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00379a026

    authors: Manalan AS,Klee CB

    更新日期:1987-03-10 00:00:00

  • Further characterization of the subunits of the receptor with high affinity for immunoglobulin E.

    abstract::The alpha, beta, and gamma subunits of the receptor with high affinity for immunoglobulin E were isolated and their compositions assessed by direct amino acid analysis and by incorporation of radioactive precursors. The compositions show no unusual features other than a rather high content of tryptophan in the alpha c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00383a024

    authors: Alcaraz G,Kinet JP,Liu TY,Metzger H

    更新日期:1987-05-05 00:00:00