Simple and rapid strategy for genetic characterization of influenza B virus reassortants.

Abstract:

:Genetic reassortment of influenza viruses is widely used for creating viruses with specific phenotypes. Reassortment of two influenza viruses, each with eight RNA segments potentially yields as many as 256 gene segment combinations. Therefore, confirmation that progeny viruses possess genomes corresponding to the specified phenotypes can be laborious and time-consuming. To establish a convenient method for genotyping influenza virus reassortants, we adapted single-strand conformation polymorphism analysis (SSCP) using standard laboratory equipment. By varying the concentration of polyacrylamide between 4-6% and the concentration of glycerol between 5-8% in the gel, together with adding PCR primers to the DNA sample during the denaturing step, optimal conditions can be found for SSCP with little effort. The described method has high accuracy and reliability, and provides a tool for rapid, cost-effective genetic screening and assessment of the purity and genetic stability of the reassortant viruses. This method should be useful in basic research applications and in preparing reassortant viruses for vaccine use.

journal_name

J Virol Methods

authors

Lugovtsev VY,Vodeiko GM,Strupczewski CM,Levandowski RA

doi

10.1016/j.jviromet.2004.11.024

subject

Has Abstract

pub_date

2005-03-01 00:00:00

pages

203-10

issue

1-2

eissn

0166-0934

issn

1879-0984

pii

S0166-0934(04)00376-3

journal_volume

124

pub_type

杂志文章
  • Demonstration of calicivirus in human faeces by immunosorbent and immunogold-labelling electron microscopy methods.

    abstract::Immunosorbent electron microscopy (ISEM) and immuno-gold staining (IGS) electron microscopy methods have been applied to human faeces, shown by direct electron microscopy (EM) to contain calicivirus. Caliciviruses were successfully trapped on grids coated with positive rabbit or human antisera against calicivirus, but...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(86)90034-0

    authors: Kjeldsberg E

    更新日期:1986-11-01 00:00:00

  • Comparative study of the replication of infectious bursal disease virus in DF-1 cell line and chicken embryo fibroblasts evaluated by a new real-time RT-PCR.

    abstract::A real-time RT-PCR method was developed for the detection of infectious bursal disease virus (IBDV). The VP5 gene of IBDV was chosen as the target binding region for a specific TaqMan probe. The results showed that viral genomic copy number could be quantified accurately ranging from 10(8)copies/microL to 10(1)copies/...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2009.01.001

    authors: Wang Y,Qi X,Gao H,Gao Y,Lin H,Song X,Pei L,Wang X

    更新日期:2009-05-01 00:00:00

  • Interferon and antibody titrations using haemagglutinating Togaviridae and trypsinized human erythrocytes.

    abstract::Several Togaviridae of the alphavirus and flavivirus genera agglutinate trypsinized human group O erythrocytes (THOE) (Shortridge and Hu, 1976). Haemagglutinin titers of Semliki Forest virus (SFV) and Japanese encephalitis virus (JEV) measured with THOE were equivalent to, if not higher than, those obtained with Embde...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(83)90073-3

    authors: Sedmak JJ,Dixon M,Schoenherr C,Sabran JL,Grossberg SE

    更新日期:1983-02-01 00:00:00

  • Non-ionic detergents facilitate non-specific binding of M13 bacteriophage to polystyrene surfaces.

    abstract::Phage-displayed random peptide libraries are widely used for identifying peptide interactions with proteins and other substrates. Selection of peptide ligands involves iterative rounds of affinity enrichment. The binding properties of the selected phage clones are routinely tested using immunoassay after propagation t...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2015.04.023

    authors: Hakami AR,Ball JK,Tarr AW

    更新日期:2015-09-01 00:00:00

  • A new method of RNA preparation for detection of hepatitis A virus in environmental samples by the polymerase chain reaction.

    abstract::A new method based on RNA preparation from shellfish by polyethylene glycol (PEG) precipitation and trichloroacetic acid (TCA) extraction was developed for the detection of hepatitis A virus (HAV) by the polymerase chain reaction (PCR). The extraction provides high yield and the extracted RNA is undegraded. This metho...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(93)90091-5

    authors: Yang F,Xu X

    更新日期:1993-06-01 00:00:00

  • Evaluation of currently available bovine viral diarrhoea virus (BVDV) and HoBi-like pestivirus (HoBiPeV) specific diagnostic tests in detection of highly divergent HoBiPeVs in cattle.

    abstract::The emergence of novel and divergent HoBi-like pestivirus (HoBiPeV) strains in cattle in Asia recently has raised concerns with regard to their reliable and accurate diagnosis. Hence, the aim of this study was to evaluate currently available BVDV diagnostic tests and HoBiPeV-specific diagnostic tests in detection of g...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2019.113707

    authors: Moorthy D,Mishra N,Kalaiyarasu S,Jhade SK,Singh VP

    更新日期:2019-10-01 00:00:00

  • Evaluating SARS-CoV-2 spike and nucleocapsid proteins as targets for antibody detection in severe and mild COVID-19 cases using a Luminex bead-based assay.

    abstract::Large-scale serosurveillance of severe acute respiratory syndrome coronavirus type 2 (SARS-CoV-2) will only be possible if serological tests are sufficiently reliable, rapid and affordable. Many assays are either labour-intensive and require specialised facilities (e.g. virus neutralization assays), or are expensive w...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2020.114025

    authors: Mariën J,Ceulemans A,Michiels J,Heyndrickx L,Kerkhof K,Foque N,Widdowson MA,Mortgat L,Duysburgh E,Desombere I,Jansens H,Van Esbroeck M,Ariën KK

    更新日期:2021-02-01 00:00:00

  • African horsesickness virus serotyping and identification of multiple co-infecting serotypes with a single genome segment 2 RT-PCR amplification and reverse line blot hybridization.

    abstract::Since protection against African horsesickness (AHS) is serotype-specific, rapid serotyping of AHSV is crucial to identify the correct vaccine serotype for efficient control of the spread of AHS outbreaks, especially when they occur in non-endemic regions. This paper describes the first one-day serotyping procedure th...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2004.08.002

    authors: Koekemoer JJ,Dijk AA

    更新日期:2004-12-01 00:00:00

  • The selection and characterization of human monoclonal antibodies to human cytomegalovirus.

    abstract::This communication describes the application of Epstein-Barr virus lymphocyte transformation technology to the production of human monoclonal antibodies specific for human cytomegalovirus. A group of such IgG antibodies have been characterized in terms of subclass, light-chain composition, specificity for particular v...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(86)90003-0

    authors: Redmond MJ,Leyritz-Wills M,Winger L,Scraba DG

    更新日期:1986-08-01 00:00:00

  • Comparison of three different hybridization assays in the quantitative measurement of serum hepatitis B virus DNA.

    abstract::The measurement of hepatitis B virus (HBV) DNA, is important for monitoring and evaluating the efficacy of anti-viral agents in the treatment of patients with chronic hepatitis B. Three different hybridization assays for quantitative measurement of HBV DNA: direct membrane (dot-blot) hybridization, liquid hybridizatio...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/s0166-0934(96)02093-9

    authors: Hwang SJ,Lee SD,Lu RH,Chan CY,Lai L,Co RL,Tong MJ

    更新日期:1996-12-01 00:00:00

  • A facile system for construction of HSV-1 variants: site directed mutation of the UL26 protease gene in HSV-1.

    abstract::A 2-plasmid/4-cosmid-based system of mutagenesis is described for construction of herpes simplex virus type 1 (HSV-1) variants with point mutations in the protease gene. The system was used to reconstruct a mutant virus (V701) with Tyr30 to Phe and Ala48 to Val mutations in HSV-1 protease that exhibits the temperature...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(95)01984-7

    authors: Register RB,Shafer JA

    更新日期:1996-04-05 00:00:00

  • Laboratory tests for evaluating the level of attenuation of bluetongue virus.

    abstract::One of the most important steps when preparing a live attenuated vaccine is the assessment of the level of attenuation in target animals. It is costly and time consuming as it requires, on each occasion, a large number of susceptible animals and contained accommodation. This study assessed the consistency of the bovin...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2008.07.007

    authors: Franchi P,Mercante MT,Ronchi GF,Armillotta G,Ulisse S,Molini U,Di Ventura M,Lelli R,Savini G,Pini A

    更新日期:2008-11-01 00:00:00

  • Development of a real-time TaqMan RT-PCR assay for the detection of H9N2 avian influenza viruses.

    abstract::Avian influenza viruses (AIVs) of the H9N2 subtype are a major economic problem in the poultry industry in Israel. Most field isolates from the last decade differ significantly from H9N2 isolates from Europe and the USA, rendering published detection methods inadequate. This study aimed to develop a real-time TaqMan((...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2010.04.019

    authors: Ben Shabat M,Meir R,Haddas R,Lapin E,Shkoda I,Raibstein I,Perk S,Davidson I

    更新日期:2010-09-01 00:00:00

  • Competitive polymerase chain reaction using an internal standard: application to the quantitation of viral DNA.

    abstract::A general strategy for the construction of an internal standard for the polymerase chain reaction (PCR) is described together with its application in the evaluation of clinical samples. This internal standard is a plasmid containing a modified target sequence that is co-amplified with the native target using the same ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(92)90099-y

    authors: Telenti A,Imboden P,Germann D

    更新日期:1992-09-01 00:00:00

  • Development of an enzyme immunoassay for the Hawaii agent of viral gastroenteritis.

    abstract::The Hawaii agent is a Norwalk-like virus of acute gastroenteritis in humans which is antigenically distinct from the prototype Norwalk agent. We established a solid phase sandwich type microtiter enzyme immunoassay (EIA) for Hawaii antigen employing sera and stools from experimentally challenged volunteers as reagents...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(88)90103-6

    authors: Treanor JJ,Madore HP,Dolin R

    更新日期:1988-12-01 00:00:00

  • Anomalous electrophoretic behavior of the major potato virus X RNA translation product.

    abstract::The major potato virus X (PVS) RNA translation product migrates in Laemmli's electrophoresis system as a 210 kDa polypeptide ('p210'). If a Tris-phosphate-SDS buffer system is used instead of a Tris-glycine-SDS one, the mobility of p210 is higher than that of the largest TMV RNA translation product, the 183 kDa protei...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(89)90136-5

    authors: Karasev AV,Miroshnichenko NA,Rozanov MN

    更新日期:1989-02-01 00:00:00

  • Bohle iridovirus as a vector for heterologous gene expression.

    abstract::The large double-stranded DNA (ds DNA) viruses were among the first to be used to construct recombinant viruses, but to date this has not been achieved with any members of the ds DNA virus family, Iridoviridae. We identified a non-essential gene, the viral homologue of eukaryotic initiation factor 2alpha (eIF-2alpha),...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2007.08.016

    authors: Pallister J,Goldie S,Coupar B,Shiell B,Michalski WP,Siddon N,Hyatt A

    更新日期:2007-12-01 00:00:00

  • Growth and purification of SV40 virus for biochemical studies.

    abstract::A detailed growth and purification scheme suitable for producing relatively large quantities of fully active, pure SV40 is presented together with data on recovery and purity at each step of the procedure. The scheme was designed to prevent the initial binding of virus to cell components as well as contamination of th...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(81)90051-3

    authors: Rosenberg BH,Deutsch JF,Ungers GE

    更新日期:1981-10-01 00:00:00

  • Optimisation of a single-primer sequence-independent amplification (SP-SIA) assay: detection of previously undetectable norovirus strains associated with outbreaks of gastroenteritis.

    abstract::The introduction of molecular diagnostic methods for investigation of gastroenteritis has significantly reduced the diagnostic gap. However, approximately 25% of cases of gastroenteritis remain undiagnosed even after screening for bacteria, parasites and viruses using the most sensitive PCR and RT-PCR methods availabl...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2009.01.006

    authors: Braham S,Iturriza-Gómara M,Gray J

    更新日期:2009-06-01 00:00:00

  • TaqMan real-time PCR for detection and quantitation of squash leaf curl virus in cucurbits.

    abstract::A real-time PCR assay based on the TaqMan chemistry was developed for reliable detection and quantitation of the squash leaf curl virus (SLCV) in melon and squash plants. This method was highly specific to SLCV and it was about one thousand times more sensitive than the conventional PCR method. The protocol of the rea...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2011.11.024

    authors: Kuan CP,Huang HC,Chang CC,Lu YL

    更新日期:2012-02-01 00:00:00

  • Cytotoxicity associated with prolonged room temperature storage of serum and proposed methods for reduction of cytotoxicity.

    abstract::Canine serum preserved at room temperature (25°C) for longer than 24h is known to exhibit significant cytotoxicity. This phenomenon is one of the major reasons for the failure of virus neutralization tests. In this study, a method for reducing this cytotoxicity was investigated by applying several treatments to dog, c...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2015.08.018

    authors: Shiraishi R,Hirayama N

    更新日期:2015-12-01 00:00:00

  • Comparison of hemagglutination inhibition assay, an ELISA-based micro-neutralization assay and colorimetric microneutralization assay to detect antibody responses to vaccination against influenza A H1N1 2009 virus.

    abstract::The hemagglutination inhibition (HI) assay has been the main method used to investigate immune responses to vaccination against influenza H1N1 (2009) virus. However microneutralization tests (MNT) have been shown to be more sensitive and more specific. In this study, the three methods of choice: (i) the HI assay, (ii)...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2010.11.024

    authors: Grund S,Adams O,Wählisch S,Schweiger B

    更新日期:2011-02-01 00:00:00

  • Antigenic signature analysis reflects differences among plant virus isolates.

    abstract::Antigenic differences among cowpea severe mosaic virus (CPSMV) isolates were clearly reflected in signature analysis employing a panel of seven well-characterized, monoclonal antibodies. Separate binding curves were generated by reacting serial dilutions of extracts from infected plant tissue containing each antigen s...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(93)90039-t

    authors: Di R,Hill JH,Van Deusen RA

    更新日期:1993-05-01 00:00:00

  • An enzymatic virus-like particle assay for sensitive detection of virus entry.

    abstract::A viral entry assay where a beta-lactamase reporter protein fused to the influenza matrix protein-1 (BlaM1) is packaged as a structural component into influenza virus-like particles (VLPs) is described. The Bla reporter is released upon fusion with target cells and can be detected in live cells by flow cytometry, micr...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2009.10.020

    authors: Tscherne DM,Manicassamy B,García-Sastre A

    更新日期:2010-02-01 00:00:00

  • Mapping of epitopes of VP2 protein of chicken anemia virus using monoclonal antibodies.

    abstract::To map the epitopes of VP2 protein of chicken anemia virus (CAV), VP2 was expressed as a fusion protein in Escherichia coli BL21 (DE3). The Western blot demonstrated that recombinant VP2 protein could be recognized by sera of chickens infected with CAV. Female BALB/c mice were immunized with purified recombinant VP2 p...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2007.03.016

    authors: Wang X,Gao H,Gao Y,Fu C,Wang Z,Lu G,Cheng Y,Wang X

    更新日期:2007-08-01 00:00:00

  • Rapid molecular detection of Lujo virus RNA.

    abstract::Lujo virus is an emerging arenavirus circulating in Southern Africa. Although to date there has only been a single outbreak of the novel haemorrhagic disease resulting from human infection with this virus, the case-fatality rate of exposed individuals, including nosocomial transmission, was 80%. The ability to identif...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2013.09.006

    authors: Atkinson B,Chamberlain J,Dowall SD,Cook N,Bruce C,Hewson R

    更新日期:2014-01-01 00:00:00

  • Epitope mapping of the NS4 and NS5 gene products of hepatitis C virus and the use of a chimeric NS4-NS5 synthetic peptide for serodiagnosis.

    abstract::Specific domains of the NS4 and NS5 gene products of hepatitis C virus have been identified using hydrophilicity profiles for the prediction of potential immunogenic regions, and epitope scanning techniques. Peptides synthesised on the basis of such data show excellent reactivity in the ELISA format. Introduction of a...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(95)00060-8

    authors: Rosa C,Osborne S,Garetto F,Griva S,Rivella A,Calabresi G,Guaschino R,Bonelli F

    更新日期:1995-10-01 00:00:00

  • Improvement of a quantitative cell tropism assay for rapid and reliable characterization of human cytomegalovirus mutants.

    abstract::Endothelial cell tropism is an inherent property of isolates of human cytomegalovirus (HCMV), and has been proposed as a pathogenicity factor of HCMV. Mutational approaches can be applied for analysis of the molecular determinants of endothelial cell tropism, but the evaluation of mutants is limited by the low reliabi...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2010.03.031

    authors: Schuessler A,Sampaio KL,Sinzger C

    更新日期:2010-08-01 00:00:00

  • A novel EBNA-1 titration method and putative anti-EBNA-1 protein.

    abstract::A novel and rapid EBNA-1 titration method has been developed which uses immunoprecipitation of specific DNA-protein complexes with EBNA-1-positive serum. The method is more sensitive than the conventional immunofluorescence method and has potential value as a diagnostic reagent for clinical laboratories. TPA induction...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(88)90062-6

    authors: Nonoyama M,Wen LT,Tabata T,Tanaka A

    更新日期:1988-09-01 00:00:00

  • Infectivity assays for the Autographa californica nuclear polyhedrosis virus using Spodoptera littoralis cells.

    abstract::Tissue culture ID50 and plaque assays for the Autographa californica nuclear polyhedrosis virus, using the Spodoptera littoralis cell line HPB-SL, were developed. Direct comparison using these assay methods showed that these cells were as susceptible to infection as the more commonly used Spodoptera frugiperda cell li...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(85)90082-5

    authors: Roberts PL

    更新日期:1985-01-01 00:00:00