Induced alpha-helix structure in the aryl hydrocarbon receptor transactivation domain modulates protein-protein interactions.

Abstract:

:The aryl hydrocarbon receptor (AhR) is an intracellular receptor protein that regulates gene transcription in response to both man-made and natural ligands. A modular transactivaton domain (TAD) has been mapped to the 304 C-terminal amino acids and consists of acidic, Q-rich, and P/S/T-rich subdomains. We have used steady-state intrinsic tryptophan fluorescence and circular dichroism spectroscopy to investigate the conformation of the acidic Q-rich region. The results reveal that this region of the protein is structurally flexible but adopts a more folded conformation in the presence of the natural osmolyte trimethylamine N-oxide (TMAO) and the solvent trifluoroethanol (TFE). In protein-protein interaction studies, the acidic Q-rich region bound to components of the general transcription machinery [TATA-binding protein (TBP), TAF4, and TAF6] as well as the coactivator proteins SRC-1a and TIF2. The binding site for TBP mapped to the acidic subdomain, while SRC-1a bound preferentially to the Q-rich sequence. Significantly, the binding of TBP was modulated by induced folding of the TAD with TMAO. The results indicate that the AhR TAD makes multiple interactions with the transcriptional machinery and protein conformation plays a critical role in receptor function. Taken together, these findings support a role for protein folding in AhR action and suggest possible mechanisms of receptor-dependent gene activation.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Watt K,Jess TJ,Kelly SM,Price NC,McEwan IJ

doi

10.1021/bi0487701

subject

Has Abstract

pub_date

2005-01-18 00:00:00

pages

734-43

issue

2

eissn

0006-2960

issn

1520-4995

journal_volume

44

pub_type

杂志文章
  • How fumarase recycles after the malate --> fumarate reaction. Insights into the reaction mechanism.

    abstract::Recycling of yeast fumarase to permit repetition of its reaction chemistry requires two proton transfers and two conformational changes, in pathways that are different in detail but thematically similar in the two directions. In the malate --> fumarate direction, simple anions such as acetate accelerate the fumarate-o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9821521

    authors: Rose IA

    更新日期:1998-12-22 00:00:00

  • Kinetic characterization of the recombinant ribonuclease from Bacillus amyloliquefaciens (barnase) and investigation of key residues in catalysis by site-directed mutagenesis.

    abstract::Barnase, the ribonuclease from Bacillus amyloliquefaciens, has been cloned and expressed in Escherichia coli [Hartley, R. W. (1988) J. Mol. Biol. 202, 913-915], thus enabling the overproduction and site-directed mutagenesis of one of the smallest enzymes (Mr equals 12,382). As barnase is also composed of just a single...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00435a033

    authors: Mossakowska DE,Nyberg K,Fersht AR

    更新日期:1989-05-02 00:00:00

  • Site of attachment of 11-cis-retinal in bovine rhodopsin.

    abstract::A dipeptide containing the binding site for retinal in bovine rhodopsin has been isolated and its sequence determined. Rhodopsin containing [11-3H]retinal was prepared in chromatographically pure form, and the [3H]retinal was reductively linked to its binding site on opsin by using borane--dimethylamine. The [3H]retin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00563a027

    authors: Wang JK,McDowell JH,Hargrave PA

    更新日期:1980-10-28 00:00:00

  • Cyclic peptides incorporating 4-carboxyphenylalanine and phosphotyrosine are potent inhibitors of pp60(c-)(src).

    abstract::The protein tyrosine kinase, pp60(c-)(src), is involved in cellular signaling and is activated during mitosis and in various tumors. We have been employing cyclic decapeptides to identify the determinants for substrate binding and phosphorylation to develop inhibitors competitive with protein substrates of Src. A stru...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992994f

    authors: Wang W,Ramdas L,Sun G,Ke S,Obeyesekere NU,Budde RJ,McMurray JS

    更新日期:2000-05-02 00:00:00

  • Single-molecule visualization of environment-sensitive fluorophores inserted into cell membranes by staphylococcal gamma-hemolysin.

    abstract::Single-molecule imaging of the entrance of a protein into the hydrophobic environment of a cell membrane was investigated. The pre-stem of LukF, one of the two components of the pore-forming toxin staphylococcal gamma-hemolysin, was specifically labeled with 6-bromoacetyl-2-dimethylaminonaphthalene (Badan), an environ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0514156

    authors: Nguyen AH,Nguyen VT,Kamio Y,Higuchi H

    更新日期:2006-02-28 00:00:00

  • Kinetic and mechanistic studies of the NO*-mediated oxidation of oxymyoglobin and oxyhemoglobin.

    abstract::The second-order rate constants for the reactions between nitrogen monoxide and oxymyoglobin or oxyhemoglobin, determined by stopped-flow spectroscopy, increase with increasing pH. At pH 7.0 the rates are (43.6 +/- 0.5) x 10(6) M(-1) x s(-1) for oxymyoglobin and (89 +/- 3) x 10(6) M(-1) x s(-1) for oxyhemoglobin (per ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002407m

    authors: Herold S,Exner M,Nauser T

    更新日期:2001-03-20 00:00:00

  • Stiffness of Cargo-Motor Linkage Tunes Myosin VI Motility and Response to Load.

    abstract::We examine the effect of cargo-motor linkage stiffness on the mechanobiological properties of the molecular motor myosin VI. We use the programmability of DNA nanostructures to modulate cargo-motor linkage stiffness and combine it with high-precision optical trapping measurements to measure the effect of linkage stiff...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00422

    authors: Shrivastava R,Rai A,Salapaka M,Sivaramakrishnan S

    更新日期:2019-11-26 00:00:00

  • Protonation state of Glu142 differs in the green- and blue-absorbing variants of proteorhodopsin.

    abstract::Proteorhodopsins are a recently discovered class of microbial rhodopsins, ubiquitous in marine bacteria. Over 4000 variants have thus far been discovered, distributed throughout the oceans of the world. Most variants fall into one of two major groups, green- or blue-absorbing proteorhodopsin (GPR and BPR, respectively...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7018964

    authors: Kralj JM,Bergo VB,Amsden JJ,Spudich EN,Spudich JL,Rothschild KJ

    更新日期:2008-03-18 00:00:00

  • Circular dichroism and UV resonance raman study of the impact of alcohols on the Gibbs free energy landscape of an alpha-helical peptide.

    abstract::We used CD and UV resonance Raman spectroscopy to study the impact of alcohols on the conformational equilibria and relative Gibbs free energy landscapes along the Ramachandran Psi-coordinate of a mainly poly-Ala peptide, AP with an AAAAA(AAARA)(3)A sequence. 2,2,2-Trifluoroethanol (TFE) most stabilizes the alpha-heli...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100176a

    authors: Xiong K,Asher SA

    更新日期:2010-04-20 00:00:00

  • Site-directed mutagenesis and molecular modeling identify a crucial amino acid in specifying the heparin affinity of FGF-1.

    abstract::Heparin potentiates the mitogenic activity of FGF-1 by increasing the affinity for its receptor and by extending its biological half-life. During the course of labeling human FGF-1 with Na(125)I and chloramine T, it was observed that the protein lost its ability to bind to heparin. In contrast, bovine FGF-1 retained i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9903345

    authors: Patrie KM,Botelho MJ,Franklin K,Chiu IM

    更新日期:1999-07-20 00:00:00

  • Structural and functional analysis of EcoRI DNA methyltransferase by proteolysis.

    abstract::Native EcoRI DNA methyltransferase (Mtase, Mr 38,050) is proteolyzed by trypsin to generate an intermediate 36-kDa fragment (p36) followed by the formation of two polypeptides of Mr 23,000 and 13,000 (p23 and p13, respectively). Protein sequence analysis of the tryptic fragments indicates that p36 results from removal...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00225a030

    authors: Reich NO,Maegley KA,Shoemaker DD,Everett E

    更新日期:1991-03-19 00:00:00

  • Comparison of N-glycosides of fetuins from different species and human alpha 2-HS-glycoprotein.

    abstract::Complex type N-glycosides of commercial bovine fetuin preparations from pooled fetal calf serum have been shown to contain comparable amounts of Gal4,4,4TRI (see structure A below) and Gal4,4,3TRI (structure B) as major asialo-structures. To investigate whether there is a clear genetic specificity for synthesis of the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00135a024

    authors: Hayase T,Rice KG,Dziegielewska KM,Kuhlenschmidt M,Reilly T,Lee YC

    更新日期:1992-05-26 00:00:00

  • Properties of tRNA species modified in the 3'-terminal ribose moiety in an eukaryotic ribosomal system.

    abstract::Phe-tRNAPhe species modified on the 3'-terminal ribose residue were investigated for their ability to participate in individual steps of the elongation cycle using eukaryotic ribosomes from reticulocytes. None of the Phe-tRNAs used, namely Phe-tRNAPhe-C-C-3'dA, Phe-tRNAPhe-C-C-3'-NH2A, and Phe-tRNAPhe-C-C-Aoxi-red, ca...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00661a035

    authors: Baksht E,de Groot N,Sprinzl M,Cramer F

    更新日期:1976-08-10 00:00:00

  • Analysis of substrate access to active sites in bacterial multicomponent monooxygenase hydroxylases: X-ray crystal structure of xenon-pressurized phenol hydroxylase from Pseudomonas sp. OX1.

    abstract::In all structurally characterized bacterial multicomponent monooxygenase (BMM) hydroxylase proteins, a series of hydrophobic cavities in the α-subunit trace a conserved path from the protein exterior to the carboxylate-bridged diiron active site. This study examines these cavities as a potential route for transport of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201248b

    authors: McCormick MS,Lippard SJ

    更新日期:2011-12-27 00:00:00

  • DNA intramolecular triplexes containing dT --> dU substitutions: unfolding energetics and ligand binding.

    abstract::We used a combination of optical and calorimetric techniques to investigate the incorporation of deoxythymidine --> deoxyuridine (dT --> dU) substitutions in the duplex and third strand of the parallel intramolecular triplex d(A(7)C(5)T(7)C(5)T(7)) (ATT). UV and differential scanning calorimetry melting experiments sh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052203b

    authors: Soto AM,Rentzeperis D,Shikiya R,Alonso M,Marky LA

    更新日期:2006-03-07 00:00:00

  • Trifluoroethanol promotes helix formation by destabilizing backbone exposure: desolvation rather than native hydrogen bonding defines the kinetic pathway of dimeric coiled coil folding.

    abstract::We measure the effects of low concentrations of helix-stabilizing cosolvents, including 2,2,2-trifluoroethanol (TFE), on the thermodynamics and kinetics of folding of the dimeric alpha-helical coiled coil derived from the leucine zipper region of bZIP transcriptional activator GCN4. The change in kinetic behavior upon...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981641y

    authors: Kentsis A,Sosnick TR

    更新日期:1998-10-13 00:00:00

  • Critical side-chain interactions at a subunit interface in the Arc repressor dimer.

    abstract::In the Arc repressor dimer, the side chains of Ile37 and Val41 in alpha-helix B pack against each other and against the symmetry-related side chains of Ile37' and Val41' in alpha-helix B' to form part of the hydrophobic core and the dimer interface. Following combinatorial mutagenesis of these positions, only the wild...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00010a025

    authors: Milla ME,Sauer RT

    更新日期:1995-03-14 00:00:00

  • Peptidyl aldehydes as reversible covalent inhibitors of SRC homology 2 domains.

    abstract::Src homology 2 (SH2) domains are phosphotyrosine- (pY-) binding modules found in a variety of signal-transducing proteins and constitute an important class of drug targets for the treatment of signaling related diseases/conditions. To date, a large number of peptidic as well as nonpeptidic SH2 domain inhibitors have b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034076u

    authors: Park J,Fu H,Pei D

    更新日期:2003-05-06 00:00:00

  • Position-dependent local motions in spin-labeled analogues of a short alpha-helical peptide determined by electron spin resonance.

    abstract::We have used electron spin resonance and circular dichroism to examine and compare the dynamics in two analogues of the Ala-based 3K(I) peptide [Marqusee, S., Robbins, V.H., & Baldwin, R. L. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 5286-5290], labeled at positions 4 and 8, throughout the alpha-helix----coil transition...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00103a016

    authors: Miick SM,Todd AP,Millhauser GL

    更新日期:1991-10-01 00:00:00

  • Electrostatic influence of QA reduction on the IR vibrational mode of the 10a-ester C==O of HA demonstrated by mutations at residues Glu L104 and Trp L100 in reaction centers from Rhodobacter sphaeroides.

    abstract::The light-induced QA-/QA FTIR difference spectrum of the photoreduction of the primary quinone (QA) in reaction centers (RCs) from Rhodobacter sphaeroides exhibits a set of complex differential bands between 1750 and 1715 cm(-1). Several of these features correspond in frequency to bands that bleach in the HA-/HA FTIR...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962871k

    authors: Breton J,Nabedryk E,Allen JP,Williams JC

    更新日期:1997-04-15 00:00:00

  • Identification of the C=O stretching vibrations of FMN and peptide backbone by 13C-labeling of the LOV2 domain of Adiantum phytochrome3.

    abstract::Phototropin, a blue-light photoreceptor in plants, has two FMN-binding domains named LOV1 and LOV2. We previously observed temperature-dependent FTIR spectral changes in the C=O stretching region (amide-I vibrational region of the peptide backbone) for the LOV2 domain of Adiantum phytochrome3 (phy3-LOV2), suggesting p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061837v

    authors: Iwata T,Nozaki D,Sato Y,Sato K,Nishina Y,Shiga K,Tokutomi S,Kandori H

    更新日期:2006-12-26 00:00:00

  • Translocator Protein 18 kDa (TSPO): An Old Protein with New Functions?

    abstract::Translocator protein 18 kDa (TSPO) was previously known as the peripheral benzodiazepine receptor (PBR) in eukaryotes, where it is mainly localized to the mitochondrial outer membrane. Considerable evidence indicates that it plays regulatory roles in steroidogenesis and apoptosis and is involved in various human disea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00142

    authors: Li F,Liu J,Liu N,Kuhn LA,Garavito RM,Ferguson-Miller S

    更新日期:2016-05-24 00:00:00

  • Membrane Docking of the Synaptotagmin 7 C2A Domain: Electron Paramagnetic Resonance Measurements Show Contributions from Two Membrane Binding Loops.

    abstract::The synaptotagmin (Syt) family of proteins plays an important role in vesicle docking and fusion during Ca(2+)-induced exocytosis in a wide variety of cell types. Its role as a Ca(2+) sensor derives primarily from its two C2 domains, C2A and C2B, which insert into anionic lipid membranes upon binding Ca(2+). Syt isofo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00421

    authors: Osterberg JR,Chon NL,Boo A,Maynard FA,Lin H,Knight JD

    更新日期:2015-09-22 00:00:00

  • Pyrimidine 5-methyl groups influence the magnitude of DNA curvature.

    abstract::DNA containing short sequences of the form (dA)n.(dT)n can exhibit pronounced degrees of stable curvature of the helix axis, provided that these homooligomeric stretches are approximately in phase with the helix repeat. However, the precise origin of this effect is unknown. We have observed that pyrimidine 5-methyl gr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00460a003

    authors: Hagerman PJ

    更新日期:1990-02-27 00:00:00

  • Functional analysis of amino acid residues essential for activity in the Na+/H+ exchanger of fission yeast.

    abstract::We identified amino acid residues important for activity of sod2, the Na+/H+ antiporter of Schizosaccharomyces pombe. We mutated all eight His residues of sod2 into Arg. Only His367-->Arg affected function and resulted in complete inability of sod2 to allow growth of S. pombe in LiCl-containing medium. Mutant S. pombe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9801457

    authors: Dibrov P,Young PG,Fliegel L

    更新日期:1998-06-09 00:00:00

  • Decrease in ADP-ribosylation of HeLa non-histone proteins from interphase to metaphase.

    abstract::Variations for non-histones in the ADP-ribosylating activities of interphase and metaphase cells were investigated. 32P-Labeled nicotinamide adenine dinucleotide ([32P]NAD), the specific precursor for the modification, was used to radioactively label proteins. Permeabilized interphase and mitotic cells, as well as iso...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00323a017

    authors: Adolph KW,Song MK

    更新日期:1985-01-15 00:00:00

  • Biochemical and kinetic characteristics of the interaction of the antitumor antibiotic sparsomycin with prokaryotic and eukaryotic ribosomes.

    abstract::Using 125I-labeled phenol-alanine sparsomycin, an analogue of sparsomycin having higher biological activity than the unmodified antibiotic, we studied the requirements and the characteristics of its interaction with the ribosome. The drug does not bind to either isolated ribosomal subunits or reconstituted whole ribos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00104a011

    authors: Lazaro E,van den Broek LA,San Felix A,Ottenheijm HC,Ballesta JP

    更新日期:1991-10-08 00:00:00

  • Stress-induced phosphorylation of PACT reduces its interaction with TRBP and leads to PKR activation.

    abstract::PACT is a stress-modulated activator of interferon (IFN)-induced double-stranded (ds) RNA-activated protein kinase (PKR) and is an important regulator of PKR-dependent signaling pathways. Stress-induced phosphorylation of PACT is essential for PACT's association with PKR leading to PKR activation. PKR activation by PA...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200104h

    authors: Singh M,Castillo D,Patel CV,Patel RC

    更新日期:2011-05-31 00:00:00

  • Thermodynamics of reversible monomer-dimer association of tubulin.

    abstract::The equilibrium between the rat brain tubulin alpha beta dimer and the dissociated alpha and beta monomers has been studied by analytical ultracentrifugation with use of a new method employing short solution columns, allowing rapid equilibration and hence short runs, minimizing tubulin decay. Simultaneous analysis of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00228a023

    authors: Sackett DL,Lippoldt RE

    更新日期:1991-04-09 00:00:00

  • Calorimetric study of the interaction of lysozyme with aqueous 1-propanol.

    abstract::The enthalpies of transfer of hen egg white lysozyme from water to aqueous solutions of 1-propanol were determined by isothermal flow calorimetry at 10, 17, 25, and 40 degrees C in 0.04 M, pH 2 glycine buffer. Alcohol concentrations up to 3.4 M were employed. Four regions in the dependence of the enthalpy of transfer ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00514a016

    authors: Sturtevant JM,Velicelebi G

    更新日期:1981-05-26 00:00:00