A method for meta-analysis of molecular association studies.

Abstract:

:Although population-based molecular association studies are becoming increasingly popular, methodology for the meta-analysis of these studies has been neglected, particularly with regard to two issues: testing Hardy-Weinberg equilibrium (HWE), and pooling results in a manner that reflects a biological model of gene effect. We propose a process for pooling results from population-based molecular association studies which consists of the following steps: (1) checking HWE using chi-square goodness of fit; we suggest performing sensitivity analysis with and without studies that are in HWE. (2) Heterogeneity is then checked, and if present, possible causes are explored. (3) If no heterogeneity is present, regression analysis is used to pool data and to determine the gene effect. (4) If there is a significant gene effect, pairwise group differences are analysed and these data are allowed to 'dictate' the best genetic model. (5) Data may then be pooled using this model. This method is easily performed using standard software, and has the advantage of not assuming an a priori genetic model.

journal_name

Stat Med

journal_title

Statistics in medicine

authors

Thakkinstian A,McElduff P,D'Este C,Duffy D,Attia J

doi

10.1002/sim.2010

subject

Has Abstract

pub_date

2005-05-15 00:00:00

pages

1291-306

issue

9

eissn

0277-6715

issn

1097-0258

journal_volume

24

pub_type

杂志文章
  • Proportional hazards models with frailties and random effects.

    abstract::We discuss some of the fundamental concepts underlying the development of frailty and random effects models in survival. One of these fundamental concepts was the idea of a frailty model where each subject has his or her own disposition to failure, their so-called frailty, additional to any effects we wish to quantify...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.1259

    authors: O'Quigley J,Stare J

    更新日期:2002-11-15 00:00:00

  • Association models for periodontal disease progression: a comparison of methods for clustered binary data.

    abstract::We investigate population-averaged (PA) and cluster-specific (CS) associations for clustered binary logistic regression in the context of a longitudinal clinical trial that investigated the association between tooth-specific visual elastase kit results and periodontal disease progression within 26 weeks of follow-up. ...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780140407

    authors: Ten Have TR,Landis JR,Weaver SL

    更新日期:1995-02-28 00:00:00

  • Monitoring medical procedures by exponential smoothing.

    abstract::A new exponentially weighted moving average (EWMA) control chart well suited for 'online' routine surveillance of medical procedures is introduced. The chart is based on inter-event counts for failures recorded when the failures occur. The method can be used for many types of hospital procedures and activities, such a...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.2520

    authors: Spliid H

    更新日期:2007-01-15 00:00:00

  • STRengthening analytical thinking for observational studies: the STRATOS initiative.

    abstract::The validity and practical utility of observational medical research depends critically on good study design, excellent data quality, appropriate statistical methods and accurate interpretation of results. Statistical methodology has seen substantial development in recent times. Unfortunately, many of these methodolog...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.6265

    authors: Sauerbrei W,Abrahamowicz M,Altman DG,le Cessie S,Carpenter J,STRATOS initiative.

    更新日期:2014-12-30 00:00:00

  • Goodman and Kruskal's lambda: a new look at an old measure of association.

    abstract::We examine Goodman and Kruskal's lambda using Efron's approach to regression and analysis of variance (ANOVA) for zero-one outcome data. For a binary response cross-classified by a single nominal predictor, we present a computationally simple ANOVA table in which lambda is analogous to Pearson's R-square. We character...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780080511

    authors: Makuch RW,Rosenberg PS,Scott G

    更新日期:1989-05-01 00:00:00

  • Proportion cured and mean log survival time as functions of tumour size.

    abstract::We obtained maximum likelihood estimates (MLEs) of the proportion cured pi c and mean log survival time mu t for a sample of 4355 patients with intraocular melanoma whose survival times subsequent to treatment were assumed to follow a log-normal distribution. Following stratification by tumour size, MLEs of pi c and m...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780090814

    authors: Gamel JW,McLean IW,Rosenberg SH

    更新日期:1990-08-01 00:00:00

  • Semiparametric additive rates model for recurrent events data with intermittent gaps.

    abstract::Statistical methods for analyzing recurrent events have attracted significant attention. The majority of existing works consider situations in which subjects are observed over time periods and events of interest that occurred during the course of follow-up are recorded. In some applications, a subject may leave the st...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8042

    authors: Su PF,Zhong J,Ou HT

    更新日期:2019-04-15 00:00:00

  • Detecting associations between intact connectomes and clinical covariates using recursive partitioning object-oriented data analysis.

    abstract::Many neuroscientists are interested in how connectomes (graphical representations of functional connectivity between areas of the brain) change in relation to covariates. In statistics, changes like this are analyzed using regression, where the outcomes or dependent variables are regressed onto the covariates. However...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8374

    authors: Yang D,Deych E,Shands B,Campbell MC,Perlmutter JS,Petersen S,Schlaggar BL,Shannon W

    更新日期:2019-12-20 00:00:00

  • Models for the propensity score that contemplate the positivity assumption and their application to missing data and causality.

    abstract::Generalized linear models are often assumed to fit propensity scores, which are used to compute inverse probability weighted (IPW) estimators. To derive the asymptotic properties of IPW estimators, the propensity score is supposed to be bounded away from zero. This condition is known in the literature as strict positi...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.7827

    authors: Molina J,Sued M,Valdora M

    更新日期:2018-10-30 00:00:00

  • Two-stage residual inclusion for survival data and competing risks-An instrumental variable approach with application to SEER-Medicare linked data.

    abstract::Instrumental variable is an essential tool for addressing unmeasured confounding in observational studies. Two-stage predictor substitution (2SPS) estimator and two-stage residual inclusion (2SRI) are two commonly used approaches in applying instrumental variables. Recently, 2SPS was studied under the additive hazards...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8071

    authors: Ying A,Xu R,Murphy J

    更新日期:2019-05-10 00:00:00

  • Analysis of messy longitudinal data from a randomized clinical trial. MRC Lung Cancer Working Party.

    abstract::The randomized clinical trial, LU19, conducted by the Medical Research Council Lung Cancer Working Party, was designed to compare ACE (doxorubicin, cyclophosphamide and etoposide) chemotherapy plus G-CSF (granulocyte colony-stimulating factor) at 2-week intervals versus ACE chemotherapy alone at standard 3-week interv...

    journal_title:Statistics in medicine

    pub_type: 临床试验,杂志文章

    doi:10.1002/1097-0258(20001015)19:19<2657::aid-sim557>

    authors: Qian W,Parmar MK,Sambrook RJ,Fayers PM,Girling DJ,Stephens RJ

    更新日期:2000-10-15 00:00:00

  • Discriminant analysis when all variables are ordered.

    abstract::Determination of the equation that relates an ordered dependent variable to ordered independent variables is sought. One solution, non-parametric discriminant analysis (NPD), involves obtaining the best monotonic step function by means of a computer search procedure. Although one can use alternative selection criteria...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780110804

    authors: Johnston B,Seshia SS

    更新日期:1992-06-15 00:00:00

  • Performance of weighted estimating equations for longitudinal binary data with drop-outs missing at random.

    abstract::The generalized estimating equations (GEE) approach is commonly used to model incomplete longitudinal binary data. When drop-outs are missing at random through dependence on observed responses (MAR), GEE may give biased parameter estimates in the model for the marginal means. A weighted estimating equations approach g...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.1241

    authors: Preisser JS,Lohman KK,Rathouz PJ

    更新日期:2002-10-30 00:00:00

  • The use of an extended baseline period in the evaluation of treatment in a longitudinal Duchenne muscular dystrophy trial.

    abstract::A trial of Duchenne muscular dystrophy involved tracking boys of all ages through a one-year baseline period, followed by a one-year trial of leucine versus placebo treatment. In this paper we develop a model for a total-muscle-strength score that uses the data of the extended baseline period in the evaluation of the ...

    journal_title:Statistics in medicine

    pub_type: 临床试验,杂志文章,随机对照试验

    doi:10.1002/sim.4780050304

    authors: Madsen KS,Miller JP,Province MA

    更新日期:1986-05-01 00:00:00

  • Drug treatment of mild hypertension to reduce the risk of CHD: is it worth-while?

    abstract::Although hypertension is regarded as a causal factor for coronary heart disease (CHD) a reduction in the risk of CHD as a result of lowering blood pressure in mild hypertension could not be demonstrated. This conclusion is based on an overview analysis of all published randomized trials in mild hypertension, including...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780071104

    authors: Holme I

    更新日期:1988-11-01 00:00:00

  • Model-based multiplicity estimation of population size.

    abstract::A survey is conducted at w of K selection units or lists, e.g. health care institutions or weeks in a year, to estimate N, the total number of individuals with particular characteristics. Our estimator utilizes two items determined for each survey participant: the number, u, among the w lists in S and the number, j, a...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3614

    authors: Laska EM,Meisner M,Wanderling J

    更新日期:2009-07-30 00:00:00

  • Efficient adaptive designs with mid-course sample size adjustment in clinical trials.

    abstract::Adaptive designs have been proposed for clinical trials in which the nuisance parameters or alternative of interest are unknown or likely to be misspecified before the trial. Although most previous works on adaptive designs and mid-course sample size re-estimation have focused on two-stage or group-sequential designs ...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3201

    authors: Bartroff J,Lai TL

    更新日期:2008-05-10 00:00:00

  • Bias in methods for deriving standardized morbidity ratio and attributable fraction estimates.

    abstract::This paper examines several methods for deriving standardized morbidity ratios (SMR) and attributable fraction (attributable risk percentage) estimates. We show that some of the proposed methods will, in general, produce biased estimators, although the low variance of certain estimators sometimes compensates for their...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780030206

    authors: Greenland S

    更新日期:1984-04-01 00:00:00

  • A Bayesian semiparametric Markov regression model for juvenile dermatomyositis.

    abstract::Juvenile dermatomyositis (JDM) is a rare autoimmune disease that may lead to serious complications, even to death. We develop a 2-state Markov regression model in a Bayesian framework to characterise disease progression in JDM over time and gain a better understanding of the factors influencing disease risk. The trans...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.7613

    authors: De Iorio M,Gallot N,Valcarcel B,Wedderburn L

    更新日期:2018-05-10 00:00:00

  • CoPlot: a tool for visualizing multivariate data in medicine.

    abstract::Many critical questions in medicine require the analysis of complex multivariate data, often from large data sets describing numerous variables for numerous subjects. In this paper, we describe CoPlot, a tool for visualizing multivariate data in medicine. CoPlot is an adaptation of multidimensional scaling (MDS) that ...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3078

    authors: Bravata DM,Shojania KG,Olkin I,Raveh A

    更新日期:2008-05-30 00:00:00

  • The use of baselines in clinical trials of bronchodilators.

    abstract::Two important qualities of controlled clinical trials are that they reduce dependence on historical standards for evaluating therapy and separate the effect of treatment from the confounding influence of time. Whatever the theory of the clinical trial, however, time has not easily been banished from the analysis of me...

    journal_title:Statistics in medicine

    pub_type: 杂志文章,评审

    doi:10.1002/sim.4780081106

    authors: Senn SJ

    更新日期:1989-11-01 00:00:00

  • On the impact of residential history in the spatial analysis of diseases with a long latency period: A study of mesothelioma in Belgium.

    abstract::Mesothelioma is a rare cancer caused by exposure to asbestos. Belgium has a known long history of asbestos production, resulting in one of the highest mesothelioma mortality rates worldwide. While the production of asbestos has stopped completely, the long latency period of mesothelioma, which can fluctuate between 20...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8697

    authors: Petrof O,Neyens T,Nuyts V,Nackaerts K,Nemery B,Faes C

    更新日期:2020-11-20 00:00:00

  • The partial testing design: a less costly way to test equivalence for sensitivity and specificity.

    abstract::We propose a new, less costly, design to test the equivalence of digital versus analogue mammography in terms of sensitivity and specificity. Because breast cancer is a rare event among asymptomatic women, the sample size for testing equivalence of sensitivity is larger than that for testing equivalence of specificity...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/(sici)1097-0258(19981015)17:19<2219::aid-s

    authors: Baker SG,Connor RJ,Kessler LG

    更新日期:1998-10-15 00:00:00

  • Last observation carry-forward and last observation analysis.

    abstract::Drop-out often occurs in clinical trials with multiple visits and drop-out is often informative in the sense that the population of patients who dropped out is different from the population of patients who completed the study. To handle data with informative drop-out, an intention-to-treat analysis, which evaluates tr...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.1519

    authors: Shao J,Zhong B

    更新日期:2003-08-15 00:00:00

  • Analysis of additive risk model with high-dimensional covariates using partial least squares.

    abstract::In this paper, we construct a partial additive regression (PAR) model to predict the survival times of cancer patients based on microarray gene expression data with right censoring. The area under time-dependent receiver operating characteristic curve is used as a model evaluation criterion. We conduct a simulation st...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3412

    authors: Zhao Y,Zhou Y,Zhao M

    更新日期:2009-01-30 00:00:00

  • A nonparametric smoothing method for assessing GEE models with longitudinal binary data.

    abstract::Studies involving longitudinal binary responses are widely applied in the health and biomedical sciences research and frequently analyzed by generalized estimating equations (GEE) method. This article proposes an alternative goodness-of-fit test based on the nonparametric smoothing approach for assessing the adequacy ...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3315

    authors: Lin KC,Chen YJ,Shyr Y

    更新日期:2008-09-30 00:00:00

  • Planning future studies based on the conditional power of a meta-analysis.

    abstract::Systematic reviews often provide recommendations for further research. When meta-analyses are inconclusive, such recommendations typically argue for further studies to be conducted. However, the nature and amount of future research should depend on the nature and amount of the existing research. We propose a method ba...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.5524

    authors: Roloff V,Higgins JP,Sutton AJ

    更新日期:2013-01-15 00:00:00

  • There is no impact of exposure measurement error on latency estimation in linear models.

    abstract::Identification of the latency period for the effect of a time-varying exposure is key when assessing many environmental, nutritional, and behavioral risk factors. A pre-specified exposure metric involving an unknown latency parameter is often used in the statistical model for the exposure-disease relationship. Likelih...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8038

    authors: Peskoe SB,Spiegelman D,Wang M

    更新日期:2019-03-30 00:00:00

  • Estimation of mean sojourn time in breast cancer screening using a Markov chain model of both entry to and exit from the preclinical detectable phase.

    abstract::The sojourn time, time spent in the preclinical detectable phase (PCDP) for chronic diseases, for example, breast cancer, plays an important role in the design and assessment of screening programmes. Traditional methods to estimate it usually assume a uniform incidence rate of preclinical disease from a randomized con...

    journal_title:Statistics in medicine

    pub_type: 临床试验,杂志文章,随机对照试验

    doi:10.1002/sim.4780141404

    authors: Duffy SW,Chen HH,Tabar L,Day NE

    更新日期:1995-07-30 00:00:00

  • Measurement error correction for nutritional exposures with correlated measurement error: use of the method of triads in a longitudinal setting.

    abstract::Nutritional exposures are often measured with considerable error in commonly used surrogate instruments such as the food frequency questionnaire (FFQ) (denoted by Q(i) for the ith subject). The error can be both systematic and random. The diet record (DR) denoted by R(i) for the ith subject is considered an alloyed go...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3238

    authors: Rosner B,Michels KB,Chen YH,Day NE

    更新日期:2008-08-15 00:00:00