Abstract：
:The amount of sequence data available to reconstruct the evolutionary history of genes and species has increased 20-fold in the past decade. Consequently the size of phylogenetic analyses has grown as well, and phylogenetic methods, algorithms and their implementations have struggled to keep pace. Computational and other challenges raised by this burgeoning database emerge at several stages of analysis, from the optimal assembly of large data matrices from sequence databases, to the efficient construction of trees from these large matrices and the piece-wise assembly of 'supertrees' from those trees in turn. A final challenge is posed by the difficulty of visualizing and making inferences from trees that might soon routinely contain thousands of species.
journal_name
Trends Plant Scijournal_title
Trends in plant scienceauthors
Sanderson MJ,Driskell ACdoi
10.1016/S1360-1385(03)00165-1subject
Has Abstractpub_date
2003-08-01 00:00:00pages
374-9issue
8eissn
1360-1385issn
1878-4372pii
S1360-1385(03)00165-1journal_volume
8pub_type
杂志文章,评审abstract：:Genome and EST sequencing projects generate a wealth of sequence information for agronomically and phylogenetically important plant species of which the majority is difficult to subject to functional genomics. Virus-induced gene silencing (VIGS) provides a powerful tool to enable gene functional analysis for species n...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2009.09.002
更新日期：2010-01-01 00:00:00
abstract：:Photosynthetic processes, including light capture, electron transfer, and energy conversion, are not only ensured by the activities of individual photosynthetic complexes but also substantially determined and regulated by the composition and assembly of the overall photosynthetic apparatus at the supramolecular level....
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2013.03.001
更新日期：2013-05-01 00:00:00
abstract：:Green algae are the only known eukaryotes with both oxygenic photosynthesis and a hydrogen metabolism. Recent physiological and genetic discoveries indicate a close connection between these metabolic pathways. The anaerobically inducible hydA genes of algae encode a special type of highly active [Fe]-hydrogenase. Elec...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/s1360-1385(02)02274-4
更新日期：2002-06-01 00:00:00
abstract：:To understand how DNA sequence is translated to phenotype we must understand the epigenetic features that regulate gene expression. Recent research illuminates the complex interactions between DNA methylation, small RNAs, silencing of transposable elements, and genomic imprinting in the Arabidopsis (Arabidopsis thalia...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2010.01.002
更新日期：2010-04-01 00:00:00
abstract：:Chloroplast genomes defied the laws of Mendelian inheritance at the dawn of plant genetics, and continue to defy the mainstream approach to biotechnology, leading the field in an environmentally friendly direction. Recent success in engineering the chloroplast genome for resistance to herbicides, insects, disease and ...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/s1360-1385(01)02193-8
更新日期：2002-02-01 00:00:00
abstract：:Gibberellins (GAs) are endogenous hormones controlling numerous aspects of plant growth and development. Our present understanding of GA physiology is based largely on genetic analysis in model plants such as Arabidopsis. In spite of the success of this approach, the discovery of additional physiological roles for GAs...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2005.01.007
更新日期：2005-03-01 00:00:00
abstract：:It is well documented that ancient sickle harvesting led to tough rachises, but the other seed dispersal properties in crop progenitors are rarely discussed. The first steps toward domestication are evolutionary responses for the recruitment of humans as dispersers. Seed dispersal-based mutualism evolved from heavy hu...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2020.01.005
更新日期：2020-04-01 00:00:00
abstract：:Actin-related proteins (ARPs) constitute a family of divergent and evolutionarily ancient eukaryotic proteins whose primary sequences display homology to conventional actins. Whereas actins play well-characterized cytoskeletal roles, the ARPs are implicated in various cellular functions in both the cytoplasm and in th...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2004.02.004
更新日期：2004-04-01 00:00:00
abstract：:Recent discoveries show that jasmonate ZIM-domain (JAZ) transcriptional repressors are key regulators of jasmonate hormonal response. Jasmonate promotes interaction between JAZ proteins and the SCF(COI1) ubiquitin ligase, leading to JAZ degradation via the 26S proteasome in Arabidopsis thaliana. Elimination of JAZ rep...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2007.11.011
更新日期：2008-02-01 00:00:00
abstract：:The secretory pathway encloses functionally interlinked organelles for the synthesis and deposition of most of the building blocks of eukaryotic cells, such as lipids, proteins and sugars. The coat protein complex II (COPII) is a specialized protein complex for the transport between secretory organelles, specifically ...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2010.05.010
更新日期：2010-09-01 00:00:00
abstract：:Plant conservation genetics provides tools to guide conservation and restoration efforts, measure and monitor success, and ultimately minimize extinction risk by conserving species as dynamic entities capable of evolving in the face of changing conditions. We consider the application of these tools to rare and common ...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2009.08.005
更新日期：2009-11-01 00:00:00
abstract：:The architecture of inflorescences diverged during the evolution of distinct plant families by mechanisms that remain unknown. Using computer modeling, Przemyslaw Prusinkiewicz and colleagues established a single model for the development of distinct inflorescences. Selection restricts inflorescence evolution to high ...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2007.11.004
更新日期：2008-01-01 00:00:00
abstract：:Pectin methylesterases catalyse the demethylesterification of cell wall polygalacturonans. In dicot plants, these ubiquitous cell wall enzymes are involved in important developmental processes including cellular adhesion and stem elongation. Here, I highlight recent studies that challenge the accepted views of the mec...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/s1360-1385(01)02045-3
更新日期：2001-09-01 00:00:00
abstract：:Recent studies indicate that a multitude of microbial processes are involved in nitric oxide production and consumptions in the pedosphere. Due to its dual function as a toxic metabolite and signaling compound, we speculate that this pedospheric nitric oxide of microbial origin can significantly interact with mycorrhi...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2020.11.007
更新日期：2021-02-01 00:00:00
abstract：:As a son of an engineer who traveled widely during his career, Heribert Hirt began his life in the exotic country of Iran, before receiving his high-school education in Germany and then studying biochemistry at the University of Cape Town and then later at the University of Vienna, from where he received his PhD in 19...
journal_title：Trends in plant science
pub_type： 传,历史文章,面试
doi：10.1016/j.tplants.2015.11.007
更新日期：2016-01-01 00:00:00
abstract：:Plants form diverse symbioses with nitrogen-fixing bacteria to gain access to ammonium, a product of the prokaryote-exclusive enzyme nitrogenase. Improving the symbiotic effectiveness of crop plants like maize, wheat or rice is a highly topical challenge and could help reduce the need for energy-intense nitrogen ferti...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2008.11.009
更新日期：2009-02-01 00:00:00
abstract：:Following the sequencing of whole genomes of model plants, high-throughput decoding of gene function is a major challenge in modern plant biology. In view of remarkable technical advances in transcriptomics and metabolomics, integrated analysis of these 'omics' by data-mining informatics is an excellent tool for predi...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2007.10.006
更新日期：2008-01-01 00:00:00
abstract：:Although the environmental correlates of plant species richness have long received attention, research into the genesis of this diversity is in its infancy. The recent development of molecular dating methods and the inference of robust phylogenetic hypotheses have made it possible to investigate this problem. I use th...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2005.09.006
更新日期：2005-11-01 00:00:00
abstract：:The goal of biofortification is to develop plants that have an increased content of bioavailable nutrients in their edible parts. Cereals serve as the main staple food for a large proportion of the world population but have the shortcoming, from a nutrition perspective, of being low in zinc and other essential nutrien...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2008.06.005
更新日期：2008-09-01 00:00:00
abstract：:In both plants and animals, defense against pathogens relies on a complex surveillance system for signs of danger. Danger signals may originate from the infectious agent or from the host itself. Immunogenic plant host factors can be roughly divided into two categories: molecules which are passively released upon cell ...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2017.07.005
更新日期：2017-09-01 00:00:00
abstract：:In this review, we examine two new trait-based models of community assembly that predict the relative abundance of species from a regional species pool. The models use fundamentally different mathematical approaches and the predictions can differ considerably. Maxent obtains the most even probability distribution subj...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2013.04.012
更新日期：2013-10-01 00:00:00
abstract：:The plant holobiont extends the plant's capacity for nutrient acquisition and stress protection. Recent studies show that under biotic stress plants can promote the acquisition of certain beneficial bacteria to their rhizosphere. Active emission of volatile organic compounds (VOCs) is a newly identified mechanism util...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2019.01.008
更新日期：2019-03-01 00:00:00
abstract：:Vernalization is the promotion of flowering in response to prolonged exposure to low temperatures. In Arabidopsis, FLOWERING LOCUS C (FLC), a suppressor of flowering, is repressed by low temperatures but the mechanism leading to the initial decrease in FLC transcription remains a mystery. No mutants that block the rep...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2014.12.004
更新日期：2015-02-01 00:00:00
abstract：:Elucidation of the molecular basis of gene-for-gene interactions between disease-resistance (R) genes and pathogen avirulence (avr) genes has been a Holy Grail of plant pathology for the past decade. Recent studies of the R-avr interaction between RRS1-R and popP2 by Laurent Deslandes et al. provide new insights and s...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2003.11.002
更新日期：2004-01-01 00:00:00
abstract：:Two recent reports by Maekawa et al. and Narusaka et al. demonstrated the transfer of a nucleotide-binding domain and leucine-rich repeat (NLR) family of immune receptors into evolutionarily diverged plants without causing adverse fitness consequences. The applications of NLRs in engineering durable and broad-spectrum...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2013.08.005
更新日期：2013-09-01 00:00:00
abstract：:Natural genetic variation within plant species is at the core of plant science ranging from agriculture to evolution. Whereas much progress has been made in mapping quantitative trait loci (QTLs) controlling this natural variation, the elucidation of the underlying molecular mechanisms has remained a bottleneck. Recen...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2007.11.008
更新日期：2008-02-01 00:00:00
abstract：:During the past decade there has been rapidly increasing interest in the role of plant volatiles in insect-plant interactions and the induction of plant defence systems by both pathogens and herbivores. Scientists are striving to link the proximate studies elucidating pathways and genes with the ultimate adaptive stud...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/s1360-1385(01)01899-4
更新日期：2001-04-01 00:00:00
abstract：:The members of the pathogenesis-related protein 1 (PR-1) family are among the most abundantly produced proteins in plants on pathogen attack, and PR-1 gene expression has long been used as a marker for salicylic acid-mediated disease resistance. However, despite considerable interest over several decades, their requir...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2017.06.013
更新日期：2017-10-01 00:00:00
abstract：:Hemp has been an important crop throughout human history for food, fiber, and medicine. Despite significant progress made by the international research community, the basic biology of hemp plants remains insufficiently understood. Clear objectives are needed to guide future research. As a semi-domesticated plant, hemp...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2017.08.004
更新日期：2017-11-01 00:00:00
abstract：:Many agronomically important traits are governed by several genes known as quantitative trait loci (QTLs). The identification of important, QTL-controlled agricultural traits has been difficult because of their complex inheritance; however, completion of the rice genomic sequence has facilitated the cloning of QTLs an...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2006.05.008
更新日期：2006-07-01 00:00:00
