Consequences of cAMP-binding site mutations on the structural stability of the type I regulatory subunit of cAMP-dependent protein kinase.

Abstract:

:The regulatory (R) subunit of cAMP-dependent protein kinase (cAPK) is a multidomain protein with two tandem cAMP-binding domains, A and B. The importance of cAMP binding on the stability of the R subunit was probed by intrinsic fluorescence and circular dichroism (CD) in the presence and absence of urea. Several mutants were characterized. The site-specific mutants R(R209K) and R(R333K) had defects in cAMP-binding sites A and B, respectively. R(M329W) had an additional tryptophan in domain B. Delta(260-379)R lacked Trp260 and domain B. The most destabilizing mutation was R209K. Both CD and fluorescence experiments carried out in the presence of urea showed a decrease in cooperativity of the unfolding, which also occurred at lower urea concentrations. Unlike native R, R(R209K) was not stabilized by excess cAMP. Additionally, CD revealed significant alterations in the secondary structure of the R209K mutant. Therefore, Arg209 is important not only as a contact site for cAMP binding but also for the intrinsic structural stability of the full-length protein. Introducing the comparable mutation into domain B, R333K, had a smaller effect on the integrity and stability of domain A. Unfolding was still cooperative; the protein was stabilized by excess cAMP, but the unfolding curve was biphasic. The R(M329W) mutant behaved functionally like the native protein. The Delta(260-379)R deletion mutant was not significantly different from wild-type RIalpha in its stability. Consequently, domain B and the interaction between Trp260 and cAMP bound to site A are not critical requirements for the structural stability of the cAPK regulatory subunit.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Cànaves JM,Leon DA,Taylor SS

doi

10.1021/bi001563q

subject

Has Abstract

pub_date

2000-12-12 00:00:00

pages

15022-31

issue

49

eissn

0006-2960

issn

1520-4995

pii

bi001563q

journal_volume

39

pub_type

杂志文章
  • Differential expression of alternatively spliced forms of MAP4: a repertoire of structurally different microtubule-binding domains.

    abstract::We previously reported that the microtubule (MT)-binding domain of microtubule-associated protein 4 (MAP4) contains three 18-amino acid imperfect repeats that are homologous to the repeats found in the MT-binding domains of the neuronal MAPs, MAP2 and tau [Chapin, S. J., & Bulinski, J. C. (1991) J. Cell Sci. 98, 27-36...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00007a025

    authors: Chapin SJ,Lue CM,Yu MT,Bulinski JC

    更新日期:1995-02-21 00:00:00

  • Structural composition of canine secretory component and immunoglobulin A.

    abstract::Dog serum and colostral immunoglobulin A (IgA) and free secretory component from colostrum were isolated using affinity chromatography. Both serum and colostral IgA showed similar susceptibility to reduction with dithiothreitol, but only colostral IgA released the additional subunit, bound secretory component. This re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00684a010

    authors: Thompson RE,Reynolds HY,Waxdal MJ

    更新日期:1975-07-01 00:00:00

  • Structure of MMACHC reveals an arginine-rich pocket and a domain-swapped dimer for its B12 processing function.

    abstract::Defects in the MMACHC gene represent the most common disorder of cobalamin (Cbl) metabolism, affecting synthesis of the enzyme cofactors adenosyl-Cbl and methyl-Cbl. The encoded MMACHC protein binds intracellular Cbl derivatives with different upper axial ligands and exhibits flavin mononucleotide (FMN)-dependent decy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300150y

    authors: Froese DS,Krojer T,Wu X,Shrestha R,Kiyani W,von Delft F,Gravel RA,Oppermann U,Yue WW

    更新日期:2012-06-26 00:00:00

  • Contribution of the active site histidine residues of ribonuclease A to nucleic acid binding.

    abstract::His12 and His119 are critical for catalysis of RNA cleavage by ribonuclease A (RNase A). Substitution of either residue with an alanine decreases the value of k(cat)/K(M) by more than 10(4)-fold. His12 and His119 are proximal to the scissile phosphoryl group of an RNA substrate in enzyme-substrate complexes. Here, the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0100182

    authors: Park C,Schultz LW,Raines RT

    更新日期:2001-04-24 00:00:00

  • Identification of Tyr413 as an active site residue in the flavoprotein tryptophan 2-monooxygenase and analysis of its contribution to catalysis.

    abstract::The flavoenzyme tryptophan 2-monooxygenase catalyzes the oxidation of tryptophan to indoleacetamide, carbon dioxide, and water. The enzyme is a homologue of l-amino acid oxidase. In the structure of l-amino acid oxidase complexed with aminobenzoate, Tyr372 hydrogen bonds with the carboxylate of the inhibitor in the ac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035300i

    authors: Sobrado P,Fitzpatrick PF

    更新日期:2003-12-02 00:00:00

  • High-efficiency triple-helix-mediated photo-cross-linking at a targeted site within a selectable mammalian gene.

    abstract::Targeting damage to specific sites in the genome represents an attractive approach to manipulating gene function in mammalian cells. To test the applicability of triple-helix formation as a means for achieving precisely timed site-specific damage within a mammalian gene, a triplex-forming oligodeoxyribonucleotide (TFO...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960881f

    authors: Vasquez KM,Wensel TG,Hogan ME,Wilson JH

    更新日期:1996-08-20 00:00:00

  • NMR backbone dynamics of the human type I interferon binding subunit, a representative cytokine receptor.

    abstract::The antiviral and antiproliferative activities of type I interferons (IFNs) are mediated by a common receptor, and its second subunit (IFNAR2) exhibits nanomolar affinity to both IFNalpha and IFNbeta subtypes. We have previously determined the structure of the IFN-binding extracellular domain of IFNAR2 (IFNAR2-EC) usi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049606g

    authors: Chill JH,Quadt SR,Anglister J

    更新日期:2004-08-10 00:00:00

  • Cytochrome P450 from Photobacterium profundum SS9, a piezophilic bacterium, exhibits a tightened control of water access to the active site.

    abstract::We report cloning, expression in Escherichia coli, and purification of cytochrome P450 from a deep-sea bacterium Photobacterium profundum strain SS9 (P450-SS9). The enzyme, which is predominately high spin (86%) in the absence of any added ligand, binds fatty acids and their derivatives and exhibits the highest affini...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101466y

    authors: Sineva EV,Davydov DR

    更新日期:2010-12-21 00:00:00

  • Molecular mechanism of action of β-hairpin antimicrobial peptide arenicin: oligomeric structure in dodecylphosphocholine micelles and pore formation in planar lipid bilayers.

    abstract::The membrane-active, cationic, β-hairpin peptide, arenicin, isolated from marine polychaeta Arenicola marina exhibits a broad spectrum of antimicrobial activity. The peptide in aqueous solution adopts the significantly twisted β-hairpin conformation without pronounced amphipathicity. To assess the mechanism of arenici...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200746t

    authors: Shenkarev ZO,Balandin SV,Trunov KI,Paramonov AS,Sukhanov SV,Barsukov LI,Arseniev AS,Ovchinnikova TV

    更新日期:2011-07-19 00:00:00

  • Recombinant hemoglobin(alpha 29leucine --> phenylalanine, alpha 96valine --> tryptophan, beta 108asparagine --> lysine) exhibits low oxygen affinity and high cooperativity combined with resistance to autoxidation.

    abstract::Using our hemoglobin expression system in Escherichia coli, we have constructed three recombinant hemoglobins (rHbs) with amino acid substitutions located in the alpha(1)beta(1) and alpha(1)beta(2) subunit interfaces and in the distal heme pocket of the alpha-chain: rHb(alphaV96W, betaN108K), rHb(alphaL29F, alphaV96W,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991271t

    authors: Jeong ST,Ho NT,Hendrich MP,Ho C

    更新日期:1999-10-05 00:00:00

  • Kinetics of ATP-dependent Mg2+ flux in mitochondria.

    abstract::ATP-dependent Mg2+ accumulation in isolated mitochondria occurs predominantly in the matrix and inner membrane compartments. In mitochondria contaminated with lysosomes, the time course and magnitude of ATP-dependent Mg2+ accumulation are influenced by various cytoplasmic substances, besides substrates of the citric a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00656a013

    authors: Kun E

    更新日期:1976-06-01 00:00:00

  • Intersubunit communication in tryptophan synthase by carbon-13 and fluorine-19 REDOR NMR.

    abstract::The beta subunits of the 143-kDa alpha2beta2 tetrameric enzyme tryptophan synthase have been labeled by L-[ring-4-19F]phenylalanine and L-[phenol-4-13C]tyrosine in an effort to monitor the positions of these residues on ligand binding. Of the 13 phenylalanine and 11 tyrosine residues in the beta subunit, only three pa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9518297

    authors: McDowell LM,Lee M,McKay RA,Anderson KS,Schaefer J

    更新日期:1996-03-12 00:00:00

  • Purification and partial amino acid sequence of papain-solubilized class II transplantation antigens.

    abstract::Papain-solubilized human class II (HLA-DR) antigens have been purified from cadaveric spleens by ion-exchange chromatography, gel chromatography, and immunosorbent purification. The isolated papain-solubilized antigens comprised two subunits with apparent molecular weights of 23 000 and 30 000, respectively. The circu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00264a036

    authors: Wiman K,Claesson L,Rask L,Trägårdh L,Peterson PA

    更新日期:1982-10-12 00:00:00

  • Observation of multiple myosin subfragment 1-ADP-fluoroberyllate complexes by 19F NMR spectroscopy.

    abstract::Fluoroaluminate and fluoroberyllate are potent inhibitors of the ATPase activity of myosin. Inhibition requires the presence of ADP, and much evidence has accumulated to suggest that the tetrahedral fluoroaluminate and fluoroberyllate ions act as phosphate analogues, binding with high affinity at the active site in th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00090a022

    authors: Henry GD,Maruta S,Ikebe M,Sykes BD

    更新日期:1993-10-05 00:00:00

  • The conserved residues glutamate-37, aspartate-100, and arginine-269 are important for the structural stabilization of Escherichia coli aspartate transcarbamoylase.

    abstract::Aspartate transcarbamoylase from Escherichia coli is a dodecameric enzyme consisting of two trimeric catalytic subunits and three dimeric regulatory subunits. The X-ray structure of this enzyme indicates that the side chains of His-41, Asp-100, and Asp-90 from one catalytic chain form interactions with the side chains...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00089a034

    authors: Baker DP,Kantrowitz ER

    更新日期:1993-09-28 00:00:00

  • Activation of cGMP phosphodiesterase in retinal rods: mechanism of interaction with the GTP-binding protein (transducin).

    abstract::The mechanism of activation of cGMP phosphodiesterase by the GTP-binding protein in the disc membrane of retinal rods has been investigated by measuring the light-induced phosphodiesterase activity in reconstituted systems where the concentration of either the GTP-binding protein or the phosphodiesterase is varied. Th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00444a040

    authors: Bennett N,Clerc A

    更新日期:1989-09-05 00:00:00

  • Identification of protein side chains near the membrane-aqueous interface: a site-directed spin labeling study of KcsA.

    abstract::This study presents an approach to identifying surface residues on membrane proteins that are exposed toward the membrane-aqueous interface. The method employs a lipid Ni(II) chelate that localizes the metal ion to a region near the membrane-aqueous interface. Lateral diffusion of the lipid chelate results in Heisenbe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi015828s

    authors: Gross A,Hubbell WL

    更新日期:2002-01-29 00:00:00

  • Elimination of the disulfide bridge in the Rieske iron-sulfur protein allows assembly of the [2Fe-2S] cluster into the Rieske protein but damages the ubiquinol oxidation site in the cytochrome bc1 complex.

    abstract::The [2Fe-2S] cluster of the Rieske iron-sulfur protein is held between two loops of the protein that are connected by a disulfide bridge. We have replaced the two cysteines that form the disulfide bridge in the Rieske protein of Saccharomyces cerevisiae with tyrosine and leucine, and tyrosine and valine, to evaluate t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035344r

    authors: Merbitz-Zahradnik T,Zwicker K,Nett JH,Link TA,Trumpower BL

    更新日期:2003-11-25 00:00:00

  • Molecular and structural insight into the role of key residues of thrombospondin-1 and calreticulin in thrombospondin-1-calreticulin binding.

    abstract::Thrombospondin-1 (TSP1) binding to calreticulin (CRT) on the cell surface signals focal adhesion disassembly, leading to the intermediate adhesive phenotype, cell migration, anoikis resistance, and collagen stimulation. Residues Lys 24 and 32 in TSP1 and amino acids 24-26 and 32-34 in CRT have been shown through bioch...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101639y

    authors: Yan Q,Murphy-Ullrich JE,Song Y

    更新日期:2011-02-01 00:00:00

  • Familial prion disease mutation alters the secondary structure of recombinant mouse prion protein: implications for the mechanism of prion formation.

    abstract::A considerable body of data supports the model that the infectious agent (called a prion) which causes the transmissible spongiform encephalopathies is a replicating polypeptide devoid of nucleic acid. Prions are believed to propagate by changing the conformation of the normal cellular prion protein (PrPc) into an inf...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982328z

    authors: Cappai R,Stewart L,Jobling MF,Thyer JM,White AR,Beyreuther K,Collins SJ,Masters CL,Barrow CJ

    更新日期:1999-03-16 00:00:00

  • Structure of the type III pantothenate kinase from Bacillus anthracis at 2.0 A resolution: implications for coenzyme A-dependent redox biology.

    abstract::Coenzyme A (CoASH) is the major low-molecular weight thiol in Staphylococcus aureus and a number of other bacteria; the crystal structure of the S. aureus coenzyme A-disulfide reductase (CoADR), which maintains the reduced intracellular state of CoASH, has recently been reported [Mallett, T.C., Wallen, J.R., Karplus, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi062299p

    authors: Nicely NI,Parsonage D,Paige C,Newton GL,Fahey RC,Leonardi R,Jackowski S,Mallett TC,Claiborne A

    更新日期:2007-03-20 00:00:00

  • Stability of trimeric OmpF porin: the contributions of the latching loop L2.

    abstract::The channel-forming protein OmpF porin from Escherichia coli spans the bacterial outer membrane. Each of the three monomers comprises a hollow, 16-stranded beta-barrel. These are associated to homotrimers which are unusually stable, due mostly to hydrophobic interactions between the beta-barrels. In addition, a loop, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981215c

    authors: Phale PS,Philippsen A,Kiefhaber T,Koebnik R,Phale VP,Schirmer T,Rosenbusch JP

    更新日期:1998-11-10 00:00:00

  • Detection of RNA-Protein Interactions in Living Cells with SHAPE.

    abstract::SHAPE-MaP is unique among RNA structure probing strategies in that it both measures flexibility at single-nucleotide resolution and quantifies the uncertainties in these measurements. We report a straightforward analytical framework that incorporates these uncertainties to allow detection of RNA structural differences...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00977

    authors: Smola MJ,Calabrese JM,Weeks KM

    更新日期:2015-11-24 00:00:00

  • Stable substructures of eightfold beta alpha-barrel proteins: fragment complementation of phosphoribosylanthranilate isomerase.

    abstract::The (beta alpha)8 (or "TIM")-barrel protein phosphoribosylanthranilate isomerase from Saccharomyces cerevisiae was cleaved between the sixth and seventh beta alpha module to test the capacity of the resulting fragments to adopt native format autonomously. The fragments, which were expressed from separate coding sequen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00129a010

    authors: Eder J,Kirschner K

    更新日期:1992-04-14 00:00:00

  • Mechanistic Studies of the Streptomyces bingchenggensis Aldolase-Dehydratase: Implications for Substrate and Reaction Specificity in the Acetoacetate Decarboxylase-like Superfamily.

    abstract::The acetoacetate decarboxylase-like superfamily (ADCSF) is a little-explored group of enzymes that may contain new biocatalysts. The low level of sequence identity (∼20%) between many ADCSF enzymes and the confirmed acetoacetate decarboxylases led us to investigate the degree of diversity in the reaction and substrate...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00652

    authors: Mydy LS,Hoppe RW,Hagemann TM,Schwabacher AW,Silvaggi NR

    更新日期:2019-10-08 00:00:00

  • Two-step purification of the major phosphorylated protein in reticulocyte 40S ribosomal subunits.

    abstract::In reticulocytes, a single ribosomal protein, S13, has been shown to be phosphorylated by the cAMP-regulated protein kinases. The 40S ribosomal subunits were phosphorylated in vitro with [gamma-32P]ATP to facilitate the identification of S13 during the two-step purification procedure. Total ribosomal protein from the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00604a003

    authors: Du Vernay VH Jr,Traugh JA

    更新日期:1978-05-30 00:00:00

  • Amino acid sequence of the sex steroid binding protein of human blood plasma.

    abstract::The amino acid sequence of the sex steroid binding protein (SBP) from human plasma has been determined. The SBP subunit consists of a 373-residue polypeptide chain containing two disulfide bonds and three oligosaccharide chains. The sequence was solved primarily by analysis of peptides derived by cleavage at either ly...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00371a048

    authors: Walsh KA,Titani K,Takio K,Kumar S,Hayes R,Petra PH

    更新日期:1986-11-18 00:00:00

  • Structural insight into how Streptomyces coelicolor maltosyl transferase GlgE binds α-maltose 1-phosphate and forms a maltosyl-enzyme intermediate.

    abstract::GlgE (EC 2.4.99.16) is an α-maltose 1-phosphate:(1→4)-α-d-glucan 4-α-d-maltosyltransferase of the CAZy glycoside hydrolase 13_3 family. It is the defining enzyme of a bacterial α-glucan biosynthetic pathway and is a genetically validated anti-tuberculosis target. It catalyzes the α-retaining transfer of maltosyl units...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500183c

    authors: Syson K,Stevenson CE,Rashid AM,Saalbach G,Tang M,Tuukkanen A,Svergun DI,Withers SG,Lawson DM,Bornemann S

    更新日期:2014-04-22 00:00:00

  • Arginine vasopressin inhibition of cyclin D1 gene expression blocks the cell cycle and cell proliferation in the mouse Y1 adrenocortical tumor cell line.

    abstract::Arginine vasopressin (AVP) is a nonapeptide long known as an endocrine and paracrine regulator of important systemic functions, namely, vasoconstriction, gluconeogenesis, corticosteroidogenesis, and excretion of water and urea. Here we report, for the first time, that AVP specifically inhibits expression of the cyclin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026807g

    authors: Schwindt TT,Forti FL,Juliano MA,Juliano L,Armelin HA

    更新日期:2003-02-25 00:00:00

  • Role of divalent cations in the 3',5'-exonuclease reaction of DNA polymerase I.

    abstract::X-ray studies of the proofreading 3',5'-exonuclease site of the large (Klenow) fragment of DNA polymerase I have detected a binuclear metal complex consisting of a pentacoordinate metal (site A) which shares a ligand, Asp-355, with an octahedral metal (site B) [Freemont, P. S., Friedman, J. M., Beese, L. S., Sanderson...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00110a012

    authors: Han H,Rifkind JM,Mildvan AS

    更新日期:1991-11-19 00:00:00