Metaphase and interphase fluorescence in situ hybridization mapping of the rice genome with bacterial artificial chromosomes.

Abstract:

:Fluorescence in situ hybridization (FISH) is a powerful tool for physical mapping in human and other mammalian species. However, application of the FISH technique has been limited in plant species, especially for mapping single- or low-copy DNA sequences, due to inconsistent signal production in plant chromosome preparations. Here we demonstrate that bacterial artificial chromosome (BAC) clones can be mapped readily on rice (Oryza sativa L.) chromosomes by FISH. Repetitive DNA sequences in BAC clones can be suppressed efficiently by using rice genomic DNA as a competitor in the hybridization mixture. BAC clones as small as 40 kb were successfully mapped. To demonstrate the application of the FISH technique in physical mapping of plant genomes, both anonymous BAC clones and clones closely linked to a rice bacterial blight-resistance locus, Xa21, were chosen for analysis. The physical location of Xa21 and the relationships among the linked clones were established, thus demonstrating the utility of FISH in plant genome analysis.

authors

Jiang J,Gill BS,Wang GL,Ronald PC,Ward DC

doi

10.1073/pnas.92.10.4487

subject

Has Abstract

pub_date

1995-05-09 00:00:00

pages

4487-91

issue

10

eissn

0027-8424

issn

1091-6490

journal_volume

92

pub_type

杂志文章
  • On the spin trapping and ESR detection of oxygen-derived radicals generated inside cells.

    abstract::Recently several attempts to identify oxygen-derived radicals in whole cells by spin trapping and electron spin resonance have been reported by using 5,5-dimethyl-1-pyrroline-N-oxide as the spin trap. In the present study, the feasibility of this method is examined. Chinese hamster V79 cells and human erythrocytes ser...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.20.7593

    authors: Samuni A,Carmichael AJ,Russo A,Mitchell JB,Riesz P

    更新日期:1986-10-01 00:00:00

  • Heteromerization of PIP aquaporins affects their intrinsic permeability.

    abstract::The plant aquaporin plasma membrane intrinsic proteins (PIP) subfamily represents one of the main gateways for water exchange at the plasma membrane (PM). A fraction of this subfamily, known as PIP1, does not reach the PM unless they are coexpressed with a PIP2 aquaporin. Although ubiquitous and abundantly expressed, ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1316537111

    authors: Yaneff A,Sigaut L,Marquez M,Alleva K,Pietrasanta LI,Amodeo G

    更新日期:2014-01-07 00:00:00

  • Delayed resistance to transgenic cotton in pink bollworm.

    abstract::Transgenic crops producing Bacillus thuringiensis (Bt) toxins kill some key insect pests and thus can reduce reliance on insecticides. Widespread planting of such Bt crops increased concerns that their usefulness would be cut short by rapid evolution of resistance to Bt toxins by pests. Pink bollworm (Pectinophora gos...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0507857102

    authors: Tabashnik BE,Dennehy TJ,Carrière Y

    更新日期:2005-10-25 00:00:00

  • Optical signatures of multifold fermions in the chiral topological semimetal CoSi.

    abstract::We report the optical conductivity in high-quality crystals of the chiral topological semimetal CoSi, which hosts exotic quasiparticles known as multifold fermions. We find that the optical response is separated into several distinct regions as a function of frequency, each dominated by different types of quasiparticl...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2010752117

    authors: Xu B,Fang Z,Sánchez-Martínez MÁ,Venderbos JWF,Ni Z,Qiu T,Manna K,Wang K,Paglione J,Bernhard C,Felser C,Mele EJ,Grushin AG,Rappe AM,Wu L

    更新日期:2020-11-03 00:00:00

  • Defective human interleukin 2 receptor gamma chain in an atypical X chromosome-linked severe combined immunodeficiency with peripheral T cells.

    abstract::X chromosome-linked severe combined immunodeficiency disease (SCIDX1) is characterized by the absence of T-cell and natural killer cell development and results from molecular mutations of the interleukin 2 receptor (IL-2R) gamma chain. The IL-2R gamma chain is a common component of the IL-2, IL-4, and IL-7 receptor sy...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.91.20.9466

    authors: DiSanto JP,Rieux-Laucat F,Dautry-Varsat A,Fischer A,de Saint Basile G

    更新日期:1994-09-27 00:00:00

  • Agonist-independent activation of acetylcholine receptor channels by protein kinase A phosphorylation.

    abstract::Protein phosphorylation is a ubiquitous and one of the most effective means of regulating protein activity. Receptor phosphorylation is a key event in signal transduction. The question, therefore, that arises is whether this modulatory mechanism might produce functional changes in a membrane receptor in the absence of...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.88.22.10213

    authors: Ferrer-Montiel AV,Montal MS,Díaz-Muñoz M,Montal M

    更新日期:1991-11-15 00:00:00

  • Pseudomonas aeruginosa type III-secreted toxin ExoT inhibits host-cell division by targeting cytokinesis at multiple steps.

    abstract::Pseudomonas aeruginosa is an opportunistic pathogen that requires preexisiting epithelial injury to cause acute infections. We report that P. aeruginosa inhibits mammalian cytokinesis in a type III secretion system and exotoxin T (ExoT)-dependent manner. ExoT is a bifunctional type III secretion system effector protei...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0605949103

    authors: Shafikhani SH,Engel J

    更新日期:2006-10-17 00:00:00

  • Quantum chaos on a critical Fermi surface.

    abstract::We compute parameters characterizing many-body quantum chaos for a critical Fermi surface without quasiparticle excitations. We examine a theory of [Formula: see text] species of fermions at nonzero density coupled to a [Formula: see text] gauge field in two spatial dimensions and determine the Lyapunov rate and the b...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1618185114

    authors: Patel AA,Sachdev S

    更新日期:2017-02-21 00:00:00

  • Splicing inhibition of U2AF65 leads to alternative exon skipping.

    abstract::U2 snRNP auxiliary factor 65 kDa (U2AF(65)) is a general splicing factor that contacts polypyrimidine (Py) tract and promotes prespliceosome assembly. In this report, we show that U2AF(65) stimulates alternative exon skipping in spinal muscular atrophy (SMA)-related survival motor neuron (SMN) pre-mRNA. A stronger 5' ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1500639112

    authors: Cho S,Moon H,Loh TJ,Jang HN,Liu Y,Zhou J,Ohn T,Zheng X,Shen H

    更新日期:2015-08-11 00:00:00

  • Entropy in molecular recognition by proteins.

    abstract::Molecular recognition by proteins is fundamental to molecular biology. Dissection of the thermodynamic energy terms governing protein-ligand interactions has proven difficult, with determination of entropic contributions being particularly elusive. NMR relaxation measurements have suggested that changes in protein con...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1621154114

    authors: Caro JA,Harpole KW,Kasinath V,Lim J,Granja J,Valentine KG,Sharp KA,Wand AJ

    更新日期:2017-06-20 00:00:00

  • Crosslinked histone octamer as a model of the nucleosome core.

    abstract::When histones in chromatin core particles were crosslinked with dimethylsuberimidate, the resulting particles had properties closely similar to those of native core particles. A crosslinked octameric histone complex was isolated from these particles under nondenaturing conditions. Upon reaction with DNA, this octameri...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.74.7.2780

    authors: Stein A,Bina-Stein M,Simpson RT

    更新日期:1977-07-01 00:00:00

  • Sensitivity to ocean acidification parallels natural pCO2 gradients experienced by Arctic copepods under winter sea ice.

    abstract::The Arctic Ocean already experiences areas of low pH and high CO2, and it is expected to be most rapidly affected by future ocean acidification (OA). Copepods comprise the dominant Arctic zooplankton; hence, their responses to OA have important implications for Arctic ecosystems, yet there is little data on their curr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1315162110

    authors: Lewis CN,Brown KA,Edwards LA,Cooper G,Findlay HS

    更新日期:2013-12-17 00:00:00

  • Biological impact on mineral dissolution: application of the lichen model to understanding mineral weathering in the rhizosphere.

    abstract::Microorganisms modify rates and mechanisms of chemical and physical weathering and clay growth, thus playing fundamental roles in soil and sediment formation. Because processes in soils are inherently complex and difficult to study, we employ a model based on the lichen-mineral system to identify the fundamental inter...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.7.3404

    authors: Banfield JF,Barker WW,Welch SA,Taunton A

    更新日期:1999-03-30 00:00:00

  • Mutations in the RPE65 gene in patients with autosomal recessive retinitis pigmentosa or leber congenital amaurosis.

    abstract::RPE65 is a protein of unknown function expressed specifically by the retinal pigment epithelium. We examined all 14 exons of this gene in 147 unrelated patients with autosomal recessive retinitis pigmentosa (RP), in 15 patients with isolate RP, and in 45 patients with Leber congenital amaurosis (LCA). Sequence anomali...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.95.6.3088

    authors: Morimura H,Fishman GA,Grover SA,Fulton AB,Berson EL,Dryja TP

    更新日期:1998-03-17 00:00:00

  • Reprogrammed and transmissible intestinal microbiota confer diminished susceptibility to induced colitis in TMF-/- mice.

    abstract::Tata Element Modulatory Factor (TMF/ARA160) is a multifunctional Golgi-associated protein, which accumulates in colonic enterocytes and goblet cells. Mice lacking TMF/ARA160 (TMF(-/-)) produce thick and uniform colonic mucus that resists adherent bacterial colonization and diminishes susceptibility of these mice to in...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1319114111

    authors: Bel S,Elkis Y,Elifantz H,Koren O,Ben-Hamo R,Lerer-Goldshtein T,Rahimi R,Ben Horin S,Nyska A,Shpungin S,Nir U

    更新日期:2014-04-01 00:00:00

  • Rescue of a primary myelofibrosis model by retinoid-antagonist therapy.

    abstract::Molecular targeting of the two receptor interaction domains of the epigenetic repressor silencing mediator of retinoid and thyroid hormone receptors (SMRT(mRID)) produced a transplantable skeletal syndrome that reduced radial bone growth, increased numbers of bone-resorbing periosteal osteoclasts, and increased bone f...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1318974110

    authors: Hong SH,Dvorak-Ewell M,Stevens HY,Barish GD,Castro GL,Nofsinger R,Frangos JA,Shoback D,Evans RM

    更新日期:2013-11-19 00:00:00

  • Reinitiation involving upstream ORFs regulates ATF4 mRNA translation in mammalian cells.

    abstract::During cellular stresses, phosphorylation of eukaryotic initiation factor-2 (eIF2) elicits gene expression designed to ameliorate the underlying cellular disturbance. Central to this stress response is the transcriptional regulator activating transcription factor, ATF4. Here we describe the mechanism regulating ATF4 e...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0400541101

    authors: Vattem KM,Wek RC

    更新日期:2004-08-03 00:00:00

  • Isolation and characterization of DNA sequences amplified in multidrug-resistant hamster cells.

    abstract::The mechanism by which mammalian cells acquire resistance to chemotherapeutic agents has been investigated by using molecular genetic techniques. LZ and C5, two independently derived multidrug-resistant Chinese hamster cell lines, share specific amplified DNA sequences. We demonstrate that commonly amplified DNA seque...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.2.337

    authors: Gros P,Croop J,Roninson I,Varshavsky A,Housman DE

    更新日期:1986-01-01 00:00:00

  • Aire unleashes stalled RNA polymerase to induce ectopic gene expression in thymic epithelial cells.

    abstract::Aire is a transcriptional regulator that induces expression of peripheral tissue antigens (PTA) in thymic medullary epithelial cells (MECs), driving immunological self-tolerance in differentiating T cells. To elucidate its mechanistic pathways, we examined its transcriptional impact in MECs in vivo by microarray analy...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1119351109

    authors: Giraud M,Yoshida H,Abramson J,Rahl PB,Young RA,Mathis D,Benoist C

    更新日期:2012-01-10 00:00:00

  • Bypassing the periplasm: reconstitution of the AcrAB multidrug efflux pump of Escherichia coli.

    abstract::AcrAB is a constitutively expressed, major multidrug efflux system of Escherichia coli. We have purified the cytoplasmic membrane component, AcrB, to near homogeneity, and reconstituted the protein into proteoliposomes. In the presence of DeltapH (outside acid), the protein catalyzed the extrusion of fluorescent phosp...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.13.7190

    authors: Zgurskaya HI,Nikaido H

    更新日期:1999-06-22 00:00:00

  • EXO70D isoforms mediate selective autophagic degradation of type-A ARR proteins to regulate cytokinin sensitivity.

    abstract::The phytohormone cytokinin influences many aspects of plant growth and development, several of which also involve the cellular process of autophagy, including leaf senescence, nutrient remobilization, and developmental transitions. The Arabidopsis type-A response regulators (type-A ARR) are negative regulators of cyto...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2013161117

    authors: Acheampong AK,Shanks C,Cheng CY,Schaller GE,Dagdas Y,Kieber JJ

    更新日期:2020-10-27 00:00:00

  • A role of transcriptional activators as antirepressors for the autoinhibitory activity of TATA box binding of transcription factor IID.

    abstract::The TATA box-binding activity of transcription factor IID (TFIID) is autoinhibited by the N-terminal domain of the Drosophila TATA box-binding protein- (TBP) associated factor 230/yeast TBP-associated factor 145 subunit, which binds to the TATA box-binding domain of TBP by mimicking the TATA box structure. Here, we pr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.120074297

    authors: Kotani T,Banno K,Ikura M,Hinnebusch AG,Nakatani Y,Kawaichi M,Kokubo T

    更新日期:2000-06-20 00:00:00

  • Krüppel-like factor 2 (KLF2) regulates B-cell reactivity, subset differentiation, and trafficking molecule expression.

    abstract::The transcription factor Krüppel-like factor 2 (KLF2) is critical for normal trafficking of T lymphocytes, but its role in B cells is unclear. We report that B cell-specific KLF2 deficiency leads to decreased expression of the trafficking molecules CD62L and β7-integrin, yet expression of sphingosine-1 phosphate recep...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1013168108

    authors: Hart GT,Wang X,Hogquist KA,Jameson SC

    更新日期:2011-01-11 00:00:00

  • Quantitative single-cell characterization of bacterial interactions reveals type VI secretion is a double-edged sword.

    abstract::Interbacterial interaction pathways play an important role in defining the structure and complexity of bacterial associations. A quantitative description of such pathways offers promise for understanding the forces that contribute to community composition. We developed time-lapse fluorescence microscopy methods for qu...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1213963109

    authors: LeRoux M,De Leon JA,Kuwada NJ,Russell AB,Pinto-Santini D,Hood RD,Agnello DM,Robertson SM,Wiggins PA,Mougous JD

    更新日期:2012-11-27 00:00:00

  • Localization of E2A mRNA expression in developing and adult rat tissues.

    abstract::E2A helix-loop-helix proteins are involved in the control of various developmental pathways. We show here by in situ hybridization that E2A transcripts are present in most embryonic and adult tissues. However, no E2A expression is detectable in heart and nonproliferative regions of the brain and spinal cord. Highest l...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.90.16.7583

    authors: Roberts VJ,Steenbergen R,Murre C

    更新日期:1993-08-15 00:00:00

  • Dynein pulls microtubules without rotating its stalk.

    abstract::Dynein is a microtubule motor that powers motility of cilia and flagella. There is evidence that the relative sliding of the doublet microtubules is due to a conformational change in the motor domain that moves a microtubule bound to the end of an extension known as the stalk. A predominant model for the movement invo...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0808194105

    authors: Ueno H,Yasunaga T,Shingyoji C,Hirose K

    更新日期:2008-12-16 00:00:00

  • Glacier loss on Kilimanjaro continues unabated.

    abstract::The dramatic loss of Kilimanjaro's ice cover has attracted global attention. The three remaining ice fields on the plateau and the slopes are both shrinking laterally and rapidly thinning. Summit ice cover (areal extent) decreased approximately 1% per year from 1912 to 1953 and approximately 2.5% per year from 1989 to...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0906029106

    authors: Thompson LG,Brecher HH,Mosley-Thompson E,Hardy DR,Mark BG

    更新日期:2009-11-24 00:00:00

  • An open challenge to advance probabilistic forecasting for dengue epidemics.

    abstract::A wide range of research has promised new tools for forecasting infectious disease dynamics, but little of that research is currently being applied in practice, because tools do not address key public health needs, do not produce probabilistic forecasts, have not been evaluated on external data, or do not provide suff...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1909865116

    authors: Johansson MA,Apfeldorf KM,Dobson S,Devita J,Buczak AL,Baugher B,Moniz LJ,Bagley T,Babin SM,Guven E,Yamana TK,Shaman J,Moschou T,Lothian N,Lane A,Osborne G,Jiang G,Brooks LC,Farrow DC,Hyun S,Tibshirani RJ,Rosenfe

    更新日期:2019-11-26 00:00:00

  • Nasopharyngeal carcinoma super-enhancer-driven ETV6 correlates with prognosis.

    abstract::Nasopharyngeal carcinoma (NPC) most frequently occurs in southern China and southeast Asia. Epidemiology studies link NPC to genetic predisposition, Epstein-Barr virus (EBV) infection, and environmental factors. Genetic studies indicate that mutations in chromatin-modifying enzymes are the most frequent genetic altera...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1705236114

    authors: Ke L,Zhou H,Wang C,Xiong G,Xiang Y,Ling Y,Khabir A,Tsao GS,Zeng Y,Zeng M,Busson P,Kieff E,Guo X,Zhao B

    更新日期:2017-09-05 00:00:00

  • Rapid upslope shifts in New Guinean birds illustrate strong distributional responses of tropical montane species to global warming.

    abstract::Temperate-zone species have responded to warming temperatures by shifting their distributions poleward and upslope. Thermal tolerance data suggests that tropical species may respond to warming temperatures even more strongly than temperate-zone species, but this prediction has yet to be tested. We addressed this data ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1318190111

    authors: Freeman BG,Class Freeman AM

    更新日期:2014-03-25 00:00:00