The use of artificial substrate units to improve inventories of cryptic crustacean species on Caribbean coral reefs.

Abstract:

:Motile cryptofauna inhabiting coral reefs are complex assemblages that utilize the space available among dead coral stands and the surrounding coral rubble substrate. They comprise a group of organisms largely overlooked in biodiversity estimates because they are hard to collect and identify, and their collection causes disturbance that is unsustainable in light of widespread reef degradation. Artificial substrate units (ASUs) provide a better sampling alternative and have the potential to enhance biodiversity estimates. The present study examines the effectiveness of ASUs made with defaunated coral rubble to estimate the diversity of motile cryptic crustaceans in the back-reef zone of the Puerto Morelos Reef National Park, Mexico. Species richness, Simpson's diversity index, Shannon-Wiener index and the composition of assemblages were compared between ASUs and samples from the surrounding coral rubble substrate. A combined total of 2,740 specimens of 178 different species, belonging to five orders of Crustacea (Amphipoda, Cumacea, Isopoda, Tanaidacea and Decapoda) were collected. Species richness was higher in the surrounding coral rubble and Shannon-Wiener and Simpson indexes were higher in ASUs. Species composition differed between methods, with only 71 species being shared among sampling methods. Decapoda was more speciose in ASUs and Peracarids in the surrounding coral rubble. Combining the use of ASUs with surrounding rubble provided a better inventory of motile cryptic crustacean biodiversity, as 65% of the species were represented by one or two specimens.

journal_name

PeerJ

journal_title

PeerJ

authors

Monroy-Velázquez LV,Rodríguez-Martínez RE,Blanchon P,Alvarez F

doi

10.7717/peerj.10389

subject

Has Abstract

pub_date

2020-11-23 00:00:00

pages

e10389

issn

2167-8359

pii

10389

journal_volume

8

pub_type

杂志文章

相关文献

PeerJ文献大全
  • C9orf72, a protein associated with amyotrophic lateral sclerosis (ALS) is a guanine nucleotide exchange factor.

    abstract::Amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD), two late onset neurodegenerative diseases, have been shown to share overlapping cellular pathologies and genetic origins. Studies suggest that a hexanucleotide repeat expansion in the first intron of the C9orf72 gene is the most common cause of fam...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5815

    authors: Iyer S,Subramanian V,Acharya KR

    更新日期:2018-10-17 00:00:00

  • A Tournaisian (earliest Carboniferous) conglomerate-preserved non-marine faunal assemblage and its environmental and sedimentological context.

    abstract::A conglomerate bed from the Tournaisian Ballagan Formation of Scotland preserves a rich array of vertebrate and other nonmarine fossils providing an insight into the wider ecosystem and paleoenvironment that existed during this pivotal stage of Earth history. It challenges hypotheses of a long-lasting post-extinction ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5972

    authors: Clack JA,Bennett CE,Davies SJ,Scott AC,Sherwin JE,Smithson TR

    更新日期:2019-01-03 00:00:00

  • Association between dry eye disease and asthma: a nationwide population-based study.

    abstract:Background:Dry eye disease (DED), a chronic ocular disease, is associated with numerous medical issues, including asthma. However, studies on these associations are limited. In this study, we investigated the incidence of DED among patients with asthma and its correlation with other allergic comorbidities. Methods:We ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5941

    authors: Huang YC,Chan WC,Wang JD,Fu LS,Tsan YT

    更新日期:2018-12-05 00:00:00

  • A systematic review of the direct and indirect effects of herbivory on plant reproduction mediated by pollination.

    abstract:Background:Plant reproduction is influenced by the net outcome of plant-herbivore and plant-pollinator interactions. While both herbivore impacts and pollinator impacts on plant reproduction have been widely studied, few studies examine them in concert. Methodology:Here, we review the contemporary literature that exam...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9049

    authors: Haas SM,Lortie CJ

    更新日期:2020-06-08 00:00:00

  • The combined effects of light intensity, temperature, and water potential on wall deposition in regulating hypocotyl elongation of Brassica rapa.

    abstract::Hypocotyl elongation is a critical sign of seed germination and seedling growth, and it is regulated by multi-environmental factors. Light, temperature, and water potential are the major environmental stimuli, and their regulatory mechanism on hypocotyl growth has been extensively studied at molecular level. However, ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9106

    authors: Wang H,Shang Q

    更新日期:2020-05-26 00:00:00

  • Modeling and analysis of the impacts of jet lag on circadian rhythm and its role in tumor growth.

    abstract::Circadian rhythms maintain a 24 h oscillation pattern in metabolic, physiological and behavioral processes in all living organisms. Circadian rhythms are organized as biochemical networks located in hypothalamus and peripheral tissues. Rhythmicity in the expression of circadian clock genes plays a vital role in regula...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4877

    authors: Hassan A,Ahmad J,Ashraf H,Ali A

    更新日期:2018-06-06 00:00:00

  • A new species of Atrimitra Dall, 1918 (Gastropoda: Mitridae) from seamounts of the recently created Nazca-Desventuradas Marine Park, Chile.

    abstract::We describe Atrimitra isolata sp. n. (Gastropoda: Mitridae), collected on the summit of seamounts (~200 m water depth) in the vicinity of Desventuradas Islands, Chile insular territory. Additionally, we provide some insight into the habitat of this new species based on underwater imagery taken with a remotely operated...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8279

    authors: Sellanes J,Salisbury RA,Tapia JM,Asorey CM

    更新日期:2019-12-20 00:00:00

  • Identification of key genes in non-small cell lung cancer by bioinformatics analysis.

    abstract:Background:Non-small cell lung cancer (NSCLC) is one of the most common malignant tumors in the world, and it has become the leading cause of death of malignant tumors. However, its mechanisms are not fully clear. The aim of this study is to investigate the key genes and explore their potential mechanisms involving in ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8215

    authors: Zhang L,Peng R,Sun Y,Wang J,Chong X,Zhang Z

    更新日期:2019-12-12 00:00:00

  • Nursing knowledge of and attitude in cardiopulmonary arrest: cross-sectional survey analysis.

    abstract:Background:Nurses are often the first to activate the chain of survival when a cardiorespiratory arrest happens. That is why it is crucial that they keep their knowledge and skills up-to-date and their attitudes to resuscitation are very important. The main aim of this study was to analyse whether the level of theoreti...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6410

    authors: Tíscar-González V,Blanco-Blanco J,Gea-Sánchez M,Rodriguez Molinuevo A,Moreno-Casbas T

    更新日期:2019-02-07 00:00:00

  • Effect of acute eye fatigue on cognition for young females: a pilot study.

    abstract::The number of people suffering from eye fatigue induced by visual display terminal (VDT) viewing is expected to increase in the modern world. Eye dysfunction is suggested to induce a decrease in cognitive function, at least in the long term. Furthermore, considering other previous findings, it may be reasonable to thi...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7978

    authors: Akagi R,Tonotsuka M,Horie R,Hirata K,Ando S

    更新日期:2019-10-29 00:00:00

  • Ischemic postconditioning influences electron transport chain protein turnover in Langendorff-perfused rat hearts.

    abstract::Ischemia postconditioning (IPo) is a promising strategy in reducing myocardial ischemia reperfusion (I/R) injury (MIRI), but its specific molecular mechanism is incompletely understood. Langendorff-perfused isolated rat hearts were subjected to global I/R and received IPo in the absence or presence of the mitochondria...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1706

    authors: Cao S,Liu Y,Wang H,Mao X,Chen J,Liu J,Xia Z,Zhang L,Liu X,Yu T

    更新日期:2016-02-16 00:00:00

  • Balanced and positively worded personality short-forms: Mini-IPIP validity and cross-cultural invariance.

    abstract:Background:The Mini-IPIP scales (Donellan et al., 2006) are possibly one of the most commonly used short inventories for measuring the Big Five Factors of personality. In this study, we aimed to investigate the psychometric properties of two Mini-IPIP Spanish short forms, one balanced and one positively wording (PW). ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5542

    authors: Martínez-Molina A,Arias VB

    更新日期:2018-09-13 00:00:00

  • Genetic divergence and fine scale population structure of the common bottlenose dolphin (Tursiops truncatus, Montagu) found in the Gulf of Guayaquil, Ecuador.

    abstract::The common bottlenose dolphin, Tursiops truncatus, is widely distributed along the western coast of South America. In Ecuador, a resident population of bottlenose dolphins inhabits the inner estuarine area of the Gulf of Guayaquil located in the southwestern part of the country and is under threat from different human...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4589

    authors: Bayas-Rea RLÁ,Félix F,Montufar R

    更新日期:2018-04-09 00:00:00

  • SlMYB102 expression enhances low-temperature stress resistance in tomato plants.

    abstract::Herein, we identified the tomato SlMYB102 gene as a MYB family transcription factor of the R2R3-MYB subfamily. We additionally determined that the SlMYB102 promoter region contains photoresponsive, abiotic stress-responsive, and hormone-responsive regulatory elements, and we detected higher SlMYB102 expression in the ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.10059

    authors: Wang M,Hao J,Chen X,Zhang X

    更新日期:2020-10-07 00:00:00

  • Gamma-H2AX biodosimetry for use in large scale radiation incidents: comparison of a rapid '96 well lyse/fix' protocol with a routine method.

    abstract::Following a radiation incident, preliminary dose estimates made by γ-H2AX foci analysis can supplement the early triage of casualties based on clinical symptoms. Sample processing time is important when many individuals need to be rapidly assessed. A protocol was therefore developed for high sample throughput that req...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.282

    authors: Moquet J,Barnard S,Rothkamm K

    更新日期:2014-03-06 00:00:00

  • An attention bias test to assess anxiety states in laying hens.

    abstract::Fear is a response to a known threat, anxiety is a response to a perceived threat. Both of these affective states can be detrimental to animal welfare in modern housing environments. In comparison to the well-validated tests for assessing fear in laying hens, tests for measuring anxiety are less developed. Perception ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7303

    authors: Campbell DLM,Taylor PS,Hernandez CE,Stewart M,Belson S,Lee C

    更新日期:2019-07-10 00:00:00

  • Allergic rhinitis, rather than asthma, might be associated with dental caries, periodontitis, and other oral diseases in adults.

    abstract:Background:The association between asthma (AS), allergic rhinitis (AR) and oral diseases remains inconclusive in adults. AS and AR often coexist. However, studies that investigate AS, AR together and their association with oral diseases are scarce. Methods:Data from 22,898 men and 28,541 women, aged 21 to 25 years, we...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7643

    authors: Ho SW,Lue KH,Ku MS

    更新日期:2019-09-10 00:00:00

  • A survey on sleep assessment methods.

    abstract:Purpose:A literature review is presented that aims to summarize and compare current methods to evaluate sleep. Methods:Current sleep assessment methods have been classified according to different criteria; e.g., objective (polysomnography, actigraphy…) vs. subjective (sleep questionnaires, diaries…), contact vs. conta...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4849

    authors: Ibáñez V,Silva J,Cauli O

    更新日期:2018-05-25 00:00:00

  • H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups.

    abstract::Soil microbial communities are continuously exposed to H2 diffusing into the soil from the atmosphere. N2-fixing nodules represent a peculiar microniche in soil where H2 can reach concentrations up to 20,000 fold higher than in the global atmosphere (0.530 ppmv). In this study, we investigated the impact of H2 exposur...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1782

    authors: Piché-Choquette S,Tremblay J,Tringe SG,Constant P

    更新日期:2016-03-10 00:00:00

  • Keraphyton gen. nov., a new Late Devonian fern-like plant from Australia.

    abstract::The first plants related to the ferns are represented by several extinct groups that emerged during the Devonian. Among them, the iridopterids are closely allied to the sphenopsids, a group represented today by the genus Equisetum. They have been documented in Middle to early Late Devonian deposits of Laurussia and th...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9321

    authors: Champreux A,Meyer-Berthaud B,Decombeix AL

    更新日期:2020-06-16 00:00:00

  • Correction: Prevalence and correlates of psychological distress among diabetes mellitus adults in the Jilin province in China: a cross-sectional study.

    abstract::[This corrects the article DOI: 10.7717/peerj.2869.]. ...

    journal_title:PeerJ

    pub_type: 杂志文章,已发布勘误

    doi:10.7717/peerj.2869/correction-1

    authors: Qiu S,Sun H,Liu Y,Kanu JS,Li R,Yu Y,Huang X,Li B,Zhang X

    更新日期:2017-12-07 00:00:00

  • A miniature inverted-repeat transposable element, AddIn-MITE, located inside a WD40 gene is conserved in Andropogoneae grasses.

    abstract::Miniature inverted-repeat transposable elements (MITEs) have been associated with genic regions in plant genomes and may play important roles in the regulation of nearby genes via recruitment of small RNAs (sRNA) to the MITEs loci. We identified eight families of MITEs in the sugarcane genome assembly with MITE-Hunter...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6080

    authors: Grativol C,Thiebaut F,Sangi S,Montessoro P,Santos WDS,Hemerly AS,Ferreira PCG

    更新日期:2019-01-11 00:00:00

  • Hermit crab response to a visual threat is sensitive to looming cues.

    abstract::Prior work in our lab has shown that an expanding image on a computer screen elicits a hiding response in the Caribbean terrestrial hermit crab (Coenobita clypeatus). We conducted two experiments to identify what properties of the expanding stimulus contribute to its effectiveness as a visual threat. First we found th...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4058

    authors: Shragai T,Ping X,Arakaki C,Garlick D,Blumstein DT,Blaisdell AP

    更新日期:2017-11-30 00:00:00

  • Job satisfaction and intention to quit: an empirical analysis of nurses in Turkey.

    abstract::The aim of this study was to identify the facets influencing job satisfaction and intention to quit of nurses employed in Turkey. Using a non-probability sampling technique, 417 nurses from six large private hospitals were surveyed from March 2014 to June 2014. The nurses' demographic data, their job-related satisfact...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1896

    authors: Masum AK,Azad MA,Hoque KE,Beh LS,Wanke P,Arslan Ö

    更新日期:2016-04-26 00:00:00

  • A new species of freshwater crab genus Fredius Pretzmann, 1967 (Crustacea: Brachyura: Pseudothelphusidae) from a naturally isolated orographic forest enclave within the semiarid Caatinga in Ceará, northeastern Brazil.

    abstract::A new species of freshwater crab, Fredius ibiapaba, is described and illustrated from a mid-altitude forested patch in Ipú (Ibiapaba plateau, Ceará, northeastern Brazil), between 635 to 782 m. The new species can be separated from its congeners by the morphology of its first gonopod: proximal half remarkably swollen, ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9370

    authors: Santos LC,Tavares M,Silva JRF,Cervini M,Pinheiro AP,Santana W

    更新日期:2020-06-29 00:00:00

  • Repeatability of glucocorticoid hormones in vertebrates: a meta-analysis.

    abstract::We often expect that investigations of the patterns, causes, and consequences of among-individual variation in a trait of interest will reveal how selective pressures or ecological conditions influence that trait. However, many endocrine traits, such as concentrations of glucocorticoid (GC) hormones, exhibit adaptive ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4398

    authors: Schoenemann KL,Bonier F

    更新日期:2018-02-21 00:00:00

  • Onset of human preterm and term birth is related to unique inflammatory transcriptome profiles at the maternal fetal interface.

    abstract:BACKGROUND:Preterm birth is a main determinant of neonatal mortality and morbidity and a major contributor to the overall mortality and burden of disease. However, research of the preterm birth is hindered by the imprecise definition of the clinical phenotype and complexity of the molecular phenotype due to multiple pr...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3685

    authors: Bukowski R,Sadovsky Y,Goodarzi H,Zhang H,Biggio JR,Varner M,Parry S,Xiao F,Esplin SM,Andrews W,Saade GR,Ilekis JV,Reddy UM,Baldwin DA

    更新日期:2017-09-01 00:00:00

  • Variance component testing for identifying differentially expressed genes in RNA-seq data.

    abstract::RNA sequencing (RNA-Seq) enables the measurement and comparison of gene expression with isoform-level quantification. Differences in the effect of each isoform may make traditional methods, which aggregate isoforms, ineffective. Here, we introduce a variance component-based test that can jointly test multiple isoforms...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3797

    authors: Yang S,Shao F,Duan W,Zhao Y,Chen F

    更新日期:2017-09-08 00:00:00

  • Move it or lose it: interspecific variation in risk response of pond-breeding anurans.

    abstract::Changes in behavior are often the proximate response of animals to human disturbance, with variability in tolerance levels leading some species to exhibit striking shifts in life history, fitness, and/or survival. Thus, elucidating the effects of disturbance on animal behavior, and how this varies among taxonomically ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6956

    authors: Matich P,Schalk CM

    更新日期:2019-06-07 00:00:00

  • Fish predation hinders the success of coral restoration efforts using fragmented massive corals.

    abstract::As coral reefs continue to decline globally, coral restoration practitioners have explored various approaches to return coral cover and diversity to decimated reefs. While branching coral species have long been the focus of restoration efforts, the recent development of the microfragmentation coral propagation techniq...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9978

    authors: Koval G,Rivas N,D'Alessandro M,Hesley D,Santos R,Lirman D

    更新日期:2020-10-02 00:00:00