Fine mapping of a leaf flattening gene Bralcm through BSR-Seq in Chinese cabbage (Brassica rapa L. ssp. pekinensis).

Abstract:

:Leaf flattening influences plant photosynthesis, thereby affecting product yield and quality. Here, we obtained a stably inherited leaf crinkled mutant (lcm), derived from the Chinese cabbage doubled haploid (DH) 'FT' line using EMS mutagenesis combined with isolated microspore culture. The crinkled phenotype was controlled by a single recessive nuclear gene, namely Bralcm, which was preliminarily mapped to chromosome A01 by bulked segregant analysis RNA-seq, and further between markers SSRS-1 and IndelD-20 using 1,575 recessive homozygous individuals in F2 population by a map-based cloning method. The target region physical distance was 126.69 kb, containing 23 genes; the marker SSRMG-4 co-segregated with the crinkled trait. Further, we found SSRMG-4 to be located on BraA01g007510.3C, a homolog of AHA2, which encodes H+-ATPase2, an essential enzyme in plant growth and development. Sequence analysis indicated a C to T transition in exon 7 of BraA01g007510.3C, resulting in a Thr (ACT) to Ile (ATT) amino acid change. Genotyping revealed that the leaf crinkled phenotype fully co-segregated with this SNP within the recombinants. qRT-PCR demonstrated that BraA01g007510.3C expression in lcm mutant leaves was dramatically higher than that in wild-type 'FT'. Thus, BraA01g007510.3C is a strong candidate gene for Bralcm, and AHA2 is possibly associated with leaf flattening in Chinese cabbage.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Zhang M,Huang S,Gao Y,Fu W,Qu G,Zhao Y,Shi F,Liu Z,Feng H

doi

10.1038/s41598-020-70975-2

subject

Has Abstract

pub_date

2020-08-18 00:00:00

pages

13924

issue

1

issn

2045-2322

pii

10.1038/s41598-020-70975-2

journal_volume

10

pub_type

杂志文章
  • Serum GFAP as a biomarker for disease severity in multiple sclerosis.

    abstract::While neurofilament light chain (NfL) measurement in serum is a well-established marker of neuroaxonal damage in multiple sclerosis (MS), data on astroglial markers in serum are missing. In our study, glial fibrillary acid protein (GFAP) and NfL were measured in cerebrospinal fluid (CSF) and serum of MS patients and p...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33158-8

    authors: Abdelhak A,Huss A,Kassubek J,Tumani H,Otto M

    更新日期:2018-10-04 00:00:00

  • Electro-optical effects of organic N-benzyl-2-methyl-4-nitroaniline dispersion in nematic liquid crystals.

    abstract::The dispersion of organic N-benzyl-2-methyl-4-nitroaniline (BNA) in nematic liquid crystals (LCs) is studied. BNA doping decreases the threshold voltage of cell because of the reduced splay elastic constant and increased dielectric anisotropy of the LC mixture. When operated in the high voltage difference condition, t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-71306-1

    authors: Selvaraj P,Subramani K,Srinivasan B,Hsu CJ,Huang CY

    更新日期:2020-08-31 00:00:00

  • Convergence of multimodal sensory pathways to the mushroom body calyx in Drosophila melanogaster.

    abstract::Detailed structural analyses of the mushroom body which plays critical roles in olfactory learning and memory revealed that it is directly connected with multiple primary sensory centers in Drosophila. Connectivity patterns between the mushroom body and primary sensory centers suggest that each mushroom body lobe proc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29481

    authors: Yagi R,Mabuchi Y,Mizunami M,Tanaka NK

    更新日期:2016-07-11 00:00:00

  • Visualizing multiple inter-organelle contact sites using the organelle-targeted split-GFP system.

    abstract::Functional integrity of eukaryotic organelles relies on direct physical contacts between distinct organelles. However, the entity of organelle-tethering factors is not well understood due to lack of means to analyze inter-organelle interactions in living cells. Here we evaluate the split-GFP system for visualizing org...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-24466-0

    authors: Kakimoto Y,Tashiro S,Kojima R,Morozumi Y,Endo T,Tamura Y

    更新日期:2018-04-18 00:00:00

  • Enhanced high-frequency absorption of anisotropic Fe3O4/graphene nanocomposites.

    abstract::Anisotropic Fe3O4 nanoparticle and a series of its graphene composites have been successfully prepared as high-frequency absorbers. The crystal structure, morphology and magnetic property of the samples were detailed characterized through X-ray diffractometer (XRD), transmission electron microscopy (TEM) and vibrating...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25075

    authors: Yin Y,Zeng M,Liu J,Tang W,Dong H,Xia R,Yu R

    更新日期:2016-05-04 00:00:00

  • Fused silica optical fibers with graded index nanostructured core.

    abstract::The ability to shape the index profile of optical fibers holds the key to fully flexible engineering of their optical properties and future applications. We present a new approach for the development of a graded index fused silica fiber based on core nanostructurization. A graded index core is obtained by means of dis...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30284-1

    authors: Anuszkiewicz A,Kasztelanic R,Filipkowski A,Stepniewski G,Stefaniuk T,Siwicki B,Pysz D,Klimczak M,Buczynski R

    更新日期:2018-08-17 00:00:00

  • Happiness and the patterns of life: a study of geolocated tweets.

    abstract::The patterns of life exhibited by large populations have been described and modeled both as a basic science exercise and for a range of applied goals such as reducing automotive congestion, improving disaster response, and even predicting the location of individuals. However, these studies have had limited access to c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02625

    authors: Frank MR,Mitchell L,Dodds PS,Danforth CM

    更新日期:2013-01-01 00:00:00

  • Functional transcription factor target discovery via compendia of binding and expression profiles.

    abstract::Genome-wide experiments to map the DNA-binding locations of transcription-associated factors (TFs) have shown that the number of genes bound by a TF far exceeds the number of possible direct target genes. Distinguishing functional from non-functional binding is therefore a major challenge in the study of transcription...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20649

    authors: Banks CJ,Joshi A,Michoel T

    更新日期:2016-02-09 00:00:00

  • Graphene-Wrapped Anatase TiO2 Nanofibers as High-Rate and Long-Cycle-Life Anode Material for Sodium Ion Batteries.

    abstract::Anatase TiO2 has been suggested as a potential sodium anode material, but the low electrical conductivity of TiO2 often limits the rate capability, resulting in poor electrochemical properties. To address this limitation, we propose graphene-wrapped anatase TiO2 nanofibers (rGO@TiO2 NFs) through an effective wrapping ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13862

    authors: Yeo Y,Jung JW,Park K,Kim ID

    更新日期:2015-09-10 00:00:00

  • Management of soil pH promotes nitrous oxide reduction and thus mitigates soil emissions of this greenhouse gas.

    abstract::While concerns about human-induced effects on the Earth's climate have mainly concentrated on carbon dioxide (CO2) and methane (CH4), reducing anthropogenic nitrous oxide (N2O) flux, mainly of agricultural origin, also represents an opportunity for substantial mitigation. To develop a solution that induces neither the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-56694-3

    authors: Hénault C,Bourennane H,Ayzac A,Ratié C,Saby NPA,Cohan JP,Eglin T,Gall CL

    更新日期:2019-12-27 00:00:00

  • Integrative genomic analysis implicates ERCC6 and its interaction with ERCC8 in susceptibility to breast cancer.

    abstract::Up to 30% of all breast cancer cases may be inherited and up to 85% of those may be due to segregation of susceptibility genes with low and moderate risk [odds ratios (OR) ≤ 3] for (mostly peri- and post-menopausal) breast cancer. The majority of low/moderate-risk genes, particularly those with minor allele frequencie...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77037-7

    authors: Moslehi R,Tsao HS,Zeinomar N,Stagnar C,Fitzpatrick S,Dzutsev A

    更新日期:2020-12-04 00:00:00

  • Comparison of orofacial pain of patients with different stages of precancer and oral cancer.

    abstract::Orofacial pain impairs a patient's speech, swallowing, eating and interpersonal relations. Thirty-seven patients with a premalignant oral lesion, 124 patients with oral squamous cell carcinoma (OSSC), and 21 patients with a recurrence of OSSC were evaluated for their orofacial pain. The University of California San Fr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00370-x

    authors: Yang Y,Zhang P,Li W

    更新日期:2017-03-16 00:00:00

  • Plasma proteomic study of acute mountain sickness susceptible and resistant individuals.

    abstract::Although extensive studies have focused on the development of acute mountain sickness (AMS), the exact mechanisms of AMS are still obscure. In this study, we used isobaric tags for relative and absolute quantitation (iTRAQ) proteomic analysis to identify novel AMS-associated biomarkers in human plasma. After 9 hours o...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-19818-9

    authors: Lu H,Wang R,Li W,Xie H,Wang C,Hao Y,Sun Y,Jia Z

    更新日期:2018-01-19 00:00:00

  • Structural insights into the ability of nucleoplasmin to assemble and chaperone histone octamers for DNA deposition.

    abstract::Nucleoplasmin (NP) is a pentameric histone chaperone that regulates the condensation state of chromatin in different cellular processes. We focus here on the interaction of NP with the histone octamer, showing that NP could bind sequentially the histone components to assemble an octamer-like particle, and crosslinked ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45726-7

    authors: Franco A,Arranz R,Fernández-Rivero N,Velázquez-Campoy A,Martín-Benito J,Segura J,Prado A,Valpuesta JM,Muga A

    更新日期:2019-07-01 00:00:00

  • Emerging methanol-tolerant AlN nanowire oxygen reduction electrocatalyst for alkaline direct methanol fuel cell.

    abstract::Replacing precious and nondurable Pt catalysts with cheap materials is a key issue for commercialization of fuel cells. In the case of oxygen reduction reaction (ORR) catalysts for direct methanol fuel cell (DMFC), the methanol tolerance is also an important concern. Here, we develop AlN nanowires with diameters of ab...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06013

    authors: Lei M,Wang J,Li JR,Wang YG,Tang HL,Wang WJ

    更新日期:2014-08-11 00:00:00

  • Giant exchange interaction in mixed lanthanides.

    abstract::Combining strong magnetic anisotropy with strong exchange interaction is a long standing goal in the design of quantum magnets. The lanthanide complexes, while exhibiting a very strong ionic anisotropy, usually display a weak exchange coupling, amounting to only a few wavenumbers. Recently, an isostructural series of ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24046

    authors: Vieru V,Iwahara N,Ungur L,Chibotaru LF

    更新日期:2016-04-18 00:00:00

  • Whole Mitogenomes Reveal the History of Swamp Buffalo: Initially Shaped by Glacial Periods and Eventually Modelled by Domestication.

    abstract::The newly sequenced mitochondrial genomes of 107 Asian swamp buffalo (Bubalus bubalis carabensis) allowed the reconstruction of the matrilineal divergence since ~900 Kya. Phylogenetic trees and Bayesian skyline plots suggest a role of the glacial periods in the demographic history of swamp buffalo. The ancestral swamp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04830-2

    authors: Wang S,Chen N,Capodiferro MR,Zhang T,Lancioni H,Zhang H,Miao Y,Chanthakhoun V,Wanapat M,Yindee M,Zhang Y,Lu H,Caporali L,Dang R,Huang Y,Lan X,Plath M,Chen H,Lenstra JA,Achilli A,Lei C

    更新日期:2017-07-05 00:00:00

  • Modeling how shark and dolphin skin patterns control transitional wall-turbulence vorticity patterns using spatiotemporal phase reset mechanisms.

    abstract::Many slow-moving biological systems like seashells and zebrafish that do not contend with wall turbulence have somewhat organized pigmentation patterns flush with their outer surfaces that are formed by underlying autonomous reaction-diffusion (RD) mechanisms. In contrast, sharks and dolphins contend with wall turbule...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06650

    authors: Bandyopadhyay PR,Hellum AM

    更新日期:2014-10-23 00:00:00

  • Highly efficient transduction of primary adult CNS and PNS neurons.

    abstract::Delivery and expression of recombinant genes, a key methodology for many applications in biological research, remains a challenge especially for mature neurons. Here, we report easy, highly efficient and well tolerated transduction of adult peripheral and central neuronal populations of diverse species in culture usin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep38928

    authors: Levin E,Diekmann H,Fischer D

    更新日期:2016-12-13 00:00:00

  • Optical absorption microscopy of localized atoms at microwave domain: two-dimensional localization based on the projection of three-dimensional localization.

    abstract::A new approach for achieving two - dimensional (2D) atom localization microscopy based on the projection of three - dimensional (3D) localization in the plane of the detector is described in the present work. Spatial variation of the position-dependent 2D-localization pattern in the xy-plane is obtained with the shift...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-57141-z

    authors: Dutta BK,Panchadhyayee P,Bayal I,Das N,Mahapatra PK

    更新日期:2020-01-17 00:00:00

  • An ultrasensitive fiveplex activity assay for cellular kinases.

    abstract::Protein kinases are enzymes whose abundance, protein-protein interactions, and posttranslational modifications together determine net signaling activity in cells. Large-scale data on cellular kinase activity are limited, because existing assays are cumbersome, poorly sensitive, low throughput, and restricted to measur...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-55998-8

    authors: Smolko CM,Janes KA

    更新日期:2019-12-19 00:00:00

  • Stress-Dependent Pore Deformation Effects on Multiphase Flow Properties of Porous Media.

    abstract::Relative permeability and capillary pressure are the governing parameters that characterize multiphase fluid flow in porous media for diverse natural and industrial applications, including surface water infiltration into the ground, CO2 sequestration, and hydrocarbon enhanced recovery. Although the drastic effects of ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-51263-0

    authors: Haghi AH,Chalaturnyk R,Talman S

    更新日期:2019-10-18 00:00:00

  • Intriguing Electrostatic Potential of CO: Negative Bond-ends and Positive Bond-cylindrical-surface.

    abstract::The strong electronegativity of O dictates that the ground state of singlet CO has positively charged C and negatively charged O, in agreement with ab initio charge analysis, but in disagreement with the dipole direction. Though this unusual phenomenon has been fairly studied, the study of electrostatic potential (EP)...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16307

    authors: Kim H,Doan VD,Cho WJ,Valero R,Aliakbar Tehrani Z,Madridejos JM,Kim KS

    更新日期:2015-11-06 00:00:00

  • Structure and function of a broad-specificity chitin deacetylase from Aspergillus nidulans FGSC A4.

    abstract::Enzymatic conversion of chitin, a β-1,4 linked polymer of N-acetylglucosamine, is of major interest in areas varying from the biorefining of chitin-rich waste streams to understanding how medically relevant fungi remodel their chitin-containing cell walls. Although numerous chitinolytic enzymes have been studied in de...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02043-1

    authors: Liu Z,Gay LM,Tuveng TR,Agger JW,Westereng B,Mathiesen G,Horn SJ,Vaaje-Kolstad G,van Aalten DMF,Eijsink VGH

    更新日期:2017-05-11 00:00:00

  • Low-Yellowing Phosphor-in-Glass for High-Power Chip-on-board White LEDs by Optimizing a Low-Melting Sn-P-F-O Glass Matrix.

    abstract::We introduce a low-melting-point (MP) Sn-P-F-O glass ceramic material into the phosphor-in-glass (PIG) material to realize an 'on-chip' chip-on-board (COB) type of phosphor-converted (pc) white light-emitting diode (WLED) with green (BaSr)2SiO4:Eu2+ and red (SrCa)AlSiN3:Eu2+ (SCASN) phosphors. The optimum Sn-P-F-O-bas...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-25680-6

    authors: Yoon HC,Yoshihiro K,Yoo H,Lee SW,Oh JH,Do YR

    更新日期:2018-05-09 00:00:00

  • Author Correction: Visualization and quantification of the degenerative pattern of the talus in unilateral varus ankle osteoarthritis.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-020-60514-4

    authors: Seki H,Ogihara N,Kokubo T,Suda Y,Ishii K,Nagura T

    更新日期:2020-02-19 00:00:00

  • Exploring the familial role of social responsiveness differences between savant and non-savant children with autism.

    abstract::Savant syndrome is a phenomenon whereby individuals with cognitive impairments have one or more outstanding abilities, inconsistent with their general intellectual functioning. Approximately 50% of savant individuals have autism spectrum disorder (ASD), and 10-30% of people with ASD have savant skills. To shed additio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-59209-7

    authors: Daniel E,Menashe I

    更新日期:2020-02-10 00:00:00

  • Quick Fabrication of Large-area Organic Semiconductor Single Crystal Arrays with a Rapid Annealing Self-Solution-Shearing Method.

    abstract::In this paper, we developed a new method to produce large-area single crystal arrays by using the organic semiconductor 9, 10-bis (phenylethynyl) anthracene (BPEA). This method involves an easy operation, is efficient, meets the demands of being low-cost and is independent of the substrate for large-area arrays fabric...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13195

    authors: Li Y,Ji D,Liu J,Yao Y,Fu X,Zhu W,Xu C,Dong H,Li J,Hu W

    更新日期:2015-08-18 00:00:00

  • Association of induced abortion with preterm birth risk in first-time mothers.

    abstract::Women who have previously had an induced abortion (IA) before their first birth have been associated with preterm birth (PTB). However, previous studies on the PTB are inconsistent. Therefore, the aim of this study was to clarify the association between IA and PTB and low birth weight (LBW) for first-time mothers. A t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23695-7

    authors: Ke L,Lin W,Liu Y,Ou W,Lin Z

    更新日期:2018-03-29 00:00:00

  • Novel method for rapid toxicity screening of magnetic nanoparticles.

    abstract::Iron oxide nanoparticles have attracted a great deal of research interest and have been widely used in bioscience and clinical research including as contrast agents for magnetic resonance imaging, hyperthermia and magnetic field assisted radionuclide therapy. It is therefore important to develop methods, which can pro...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-25852-4

    authors: Erofeev A,Gorelkin P,Garanina A,Alova A,Efremova M,Vorobyeva N,Edwards C,Korchev Y,Majouga A

    更新日期:2018-05-10 00:00:00