Colonization, penetration and transformation of manganese oxide nodules by Aspergillus niger.

abstract：:A 47 kb genomic island (GEI) bracketed by 50 bp direct repeats, containing 52 annotated genes, was found to delete spontaneously from the genome of Desulfovibrio vulgaris Hildenborough. The island contains genes for site-specific recombinases and transposases, rubredoxin:oxygen oxidoreductase-1 (Roo1) and hybrid clust...

journal_title：Environmental microbiology

authors： Johnston S,Lin S,Lee P,Caffrey SM,Wildschut J,Voordouw JK,da Silva SM,Pereira IA,Voordouw G

更新日期：2009-04-01 00:00:00

abstract：:The activated sludge process relies on the formation of strong microbial flocs. The knowledge about dominant floc-forming bacteria is at present very limited, especially from a phylogenetic perspective. In this study, numerous microcolonies in the activated sludge flocs were found to be targeted by a Betaproteobacteri...

journal_title：Environmental microbiology

authors： Thomsen TR,Nielsen JL,Ramsing NB,Nielsen PH

更新日期：2004-05-01 00:00:00

abstract：:The anaerobic oxidation of methane (AOM) is one of the major sinks for methane on earth and is known to be mediated by at least two phylogenetically different groups of anaerobic methanotrophic Archaea (ANME-I and ANME-II). We present the first comparative in vitro study of the environmental regulation and physiology ...

journal_title：Environmental microbiology

authors： Nauhaus K,Treude T,Boetius A,Krüger M

更新日期：2005-01-01 00:00:00

abstract：:Biological membranes have evolved different mechanisms to modify their composition in response to chemical stimuli in a process called 'homeoviscous adaptation'. Among these mechanisms, modifications in the ratio of saturated/unsaturated fatty acids and in cis/trans fatty acid isomers, cyclopropanation and changes in ...

journal_title：Environmental microbiology

authors： Bernal P,Muñoz-Rojas J,Hurtado A,Ramos JL,Segura A

更新日期：2007-05-01 00:00:00

abstract：:The APSES protein family comprises a conserved class of fungus-specific transcriptional regulators. Some members have been identified in partial ascomycetes. In this study, the APSES protein StuA (AoStuA) of the nematode-trapping fungus Arthrobotrys oligospora was characterized. Compared with the wild-type (WT) strain...

journal_title：Environmental microbiology

authors： Xie M,Wang Y,Tang L,Yang L,Zhou D,Li Q,Niu X,Zhang KQ,Yang J

更新日期：2019-12-01 00:00:00

abstract：:Autotrophic ammonia oxidation occurs in acid soils, even though laboratory cultures of isolated ammonia oxidizing bacteria fail to grow below neutral pH. To investigate whether archaea possessing ammonia monooxygenase genes were responsible for autotrophic nitrification in acid soils, the community structure and phylo...

journal_title：Environmental microbiology

authors： Nicol GW,Leininger S,Schleper C,Prosser JI

更新日期：2008-11-01 00:00:00

abstract：:Phage predation is one of the key forces that shape genetic diversity in bacterial genomes. Phages are also believed to act as modulators of the microbiota composition and, consequently, as agents that drive bacterial speciation in complex bacterial communities. Very little is known about the occurrence and genetic va...

journal_title：Environmental microbiology

authors： Lugli GA,Milani C,Turroni F,Tremblay D,Ferrario C,Mancabelli L,Duranti S,Ward DV,Ossiprandi MC,Moineau S,van Sinderen D,Ventura M

更新日期：2016-07-01 00:00:00

abstract：:Microbial consumption is one of the main processes, along with photolysis and ventilation, that remove the biogenic trace gas dimethylsulfide (DMS) from the surface ocean. Although a few isolates of marine bacteria have been studied for their ability to utilize DMS, little is known about the characteristics or phyloge...

journal_title：Environmental microbiology

authors： Vila-Costa M,Del Valle DA,González JM,Slezak D,Kiene RP,Sánchez O,Simó R

更新日期：2006-12-01 00:00:00

abstract：:Arthrobacter chlorophenolicus A6 is a Gram-positive, 4-chlorophenol-degrading soil bacterium that was recently shown to be an effective colonizer of plant leaf surfaces. The genetic basis for this phyllosphere competency is unknown. In this paper, we describe the genome-wide expression profile of A.chlorophenolicus on...

journal_title：Environmental microbiology

authors： Scheublin TR,Deusch S,Moreno-Forero SK,Müller JA,van der Meer JR,Leveau JH

更新日期：2014-07-01 00:00:00

abstract：:The diversity of microbial eukaryotes was surveyed by environmental sequencing from tropical lagoon sites of the South Pacific, collected through the American Museum of Natural History (AMNH)'s Explore21 expedition to the Solomon Islands in September 2013. The sampled lagoons presented low nutrient concentrations typi...

journal_title：Environmental microbiology

authors： Kim E,Sprung B,Duhamel S,Filardi C,Kyoon Shin M

更新日期：2016-12-01 00:00:00

abstract：:The advances in synthetic biology bring exciting new opportunities to reprogram microorganisms with novel functionalities for environmental applications. For real-world applications, a genetic tool that enables genetic engineering in a stably genomic inherited manner is greatly desired. In this work, we design a novel...

journal_title：Environmental microbiology

authors： Fan YY,Tang Q,Li Y,Li FH,Wu JH,Li WW,Yu HQ

更新日期：2020-12-28 00:00:00

abstract：:Microbes inhabiting intermittent streambeds are responsible for controlling and developing many biogeochemical processes essential for the ecosystem functions. Although streambed microbiota is adapted to intermittency the intensification of water scarcity and prolonged dry periods may jeopardise their capacity to cope...

journal_title：Environmental microbiology

authors： Gionchetta G,Artigas J,Arias-Real R,Oliva F,Romaní AM

更新日期：2020-06-01 00:00:00

abstract：:The actinomycete Amycolatopsis japonicum produces the complexing agent ethylenediamine-disuccinate ([S,S]-EDDS), which is an isomer of the widely industrially applied ethylenediamine-tetraacetate (EDTA). In contrast to EDTA, [S,S]-EDDS is readily biodegradable and is therefore an alternative with a favourable environm...

journal_title：Environmental microbiology

authors： Spohn M,Wohlleben W,Stegmann E

更新日期：2016-04-01 00:00:00

abstract：:Proteorhodopsin (PR) is a light-driven proton pump that has been found in a variety of marine bacteria, including Pelagibacter ubique, a member of the ubiquitous SAR11 clade. The goals of this study were to explore the diversity of PR genes and to estimate their abundance in the North Atlantic Ocean using quantitative...

journal_title：Environmental microbiology

authors： Campbell BJ,Waidner LA,Cottrell MT,Kirchman DL

更新日期：2008-01-01 00:00:00

abstract：:When bacterial lineages make the transition from free-living to permanent association with hosts, they can undergo massive gene losses, for which the selective forces within host tissues are unknown. We identified here melanogenic clinical isolates of Pseudomonas aeruginosa with large chromosomal deletions (66 to 270 ...

journal_title：Environmental microbiology

authors： Hocquet D,Petitjean M,Rohmer L,Valot B,Kulasekara HD,Bedel E,Bertrand X,Plésiat P,Köhler T,Pantel A,Jacobs MA,Hoffman LR,Miller SI

更新日期：2016-10-01 00:00:00

abstract：:Many bacterial pathogens rely on quorum sensing to control virulence gene expression. Based on numerous experiments conducted under well-defined conditions, quorum sensing interference is considered as a promising strategy to tackle infections and thus might have the potential to (partially) replace antibiotics. Despi...

journal_title：Environmental microbiology

authors： Liu Y,Qin Q,Defoirdt T

更新日期：2018-11-01 00:00:00

abstract：:Endophytic microorganisms asymptomatically colonise plant tissues. Exploring the assembly dynamics of bacterial endophytic communities is essential to understand the functioning of the plant holobiont and to optimise their possible use as biopesticides or plant biostimulants. The variation in endophytic communities in...

journal_title：Environmental microbiology

authors： Campisano A,Albanese D,Yousaf S,Pancher M,Donati C,Pertot I

更新日期：2017-08-01 00:00:00

abstract：:Marinobacter santoriniensis NKSG1(T) is a mesophilic, dissimilatory arsenate-reducing and arsenite-oxidizing bacterium isolated from an arsenate-reducing enrichment culture. The inoculum was obtained from arsenic-rich shallow marine hydrothermal sediment from Santorini, Greece, with evidence of arsenic redox cycling. ...

journal_title：Environmental microbiology

authors： Handley KM,Héry M,Lloyd JR

更新日期：2009-06-01 00:00:00

abstract：:The Black Sea chemocline represents the largest extant habitat of anoxygenic phototrophic bacteria and harbours a monospecific population of Chlorobium phylotype BS-1. High-sensitivity measurements of underwater irradiance and sulfide revealed that the optical properties of the overlying water column were similar acro...

journal_title：Environmental microbiology

authors： Marschall E,Jogler M,Hessge U,Overmann J

更新日期：2010-05-01 00:00:00

abstract：:High temperatures (e.g., fever) and gut microbiota can both influence host resistance to infection. However, effects of temperature-driven changes in gut microbiota on resistance to parasites remain unexplored. We examined the temperature dependence of infection and gut bacterial communities in bumble bees infected wi...

journal_title：Environmental microbiology

authors： Palmer-Young EC,Ngor L,Burciaga Nevarez R,Rothman JA,Raffel TR,McFrederick QS

更新日期：2019-12-01 00:00:00

abstract：:Fungi are important decomposers of leaf litter in streams and may have knock-on effects on other microbes and carbon cycling. To elucidate such potential effects, we designed an experiment in outdoor experimental channels simulating sand-bottom streams in an early-successional state. We hypothesized that the presence ...

journal_title：Environmental microbiology

authors： Frossard A,Gerull L,Mutz M,Gessner MO

更新日期：2012-11-01 00:00:00

abstract：:Rab GTPases are required for vesicle-vacuolar fusion during vacuolar biogenesis in fungi. To date, little is known about the biological functions of the Rab small GTPase components in Magnaporthe oryzae. In this study, we investigated MoYpt7 of M. oryzae, a homologue of the small Ras-like GTPase Ypt7 in Saccharomyces ...

journal_title：Environmental microbiology

authors： Liu XH,Chen SM,Gao HM,Ning GA,Shi HB,Wang Y,Dong B,Qi YY,Zhang DM,Lu GD,Wang ZH,Zhou J,Lin FC

更新日期：2015-11-01 00:00:00

abstract：:Technologies for massively parallel sequencing are revolutionizing microbial ecology and are vastly increasing the scale of ribosomal RNA (rRNA) gene studies. Although pyrosequencing has increased the breadth and depth of possible rRNA gene sampling, one drawback is that the number of reads obtained per sample is diff...

journal_title：Environmental microbiology

authors： Gihring TM,Green SJ,Schadt CW

更新日期：2012-02-01 00:00:00

abstract：:Syntrophomonas wolfei is a specialist, evolutionarily adapted for syntrophic growth with methanogens and other hydrogen- and/or formate-using microorganisms. This slow-growing anaerobe has three putative ribosome RNA operons, each of which has 16S rRNA and 23S rRNA genes of different length and multiple 5S rRNA genes....

journal_title：Environmental microbiology

authors： Sieber JR,Sims DR,Han C,Kim E,Lykidis A,Lapidus AL,McDonnald E,Rohlin L,Culley DE,Gunsalus R,McInerney MJ

更新日期：2010-08-01 00:00:00

abstract：:The stimulation of bacteria capable of reducing soluble U(VI) to sparingly soluble U(IV) is a promising approach for containing U(VI) plumes. Anaeromyxobacter dehalogenans is capable of mediating this activity; however, its ability to couple U(VI) reduction to growth has not been established. Monitoring the increase i...

journal_title：Environmental microbiology

authors： Sanford RA,Wu Q,Sung Y,Thomas SH,Amos BK,Prince EK,Löffler FE

更新日期：2007-11-01 00:00:00

abstract：:There are a multitude of resistance strategies that microbes can apply to avoid inhibition by antimicrobials. One of these strategies is the enzymatic modification of the antibiotic, in a process generally termed inactivation. Furthermore, some microorganisms may not be limited to the mere inactivation of the antimicr...

journal_title：Environmental microbiology

authors： Perri R,Kolvenbach BA,Corvini PFX

更新日期：2020-07-01 00:00:00

abstract：:Biofilms are dynamic players in biogeochemical cycling in running waters and are subjected to environmental stressors like those provoked by climate change. We investigated whether a 2°C increase in flowing water would affect prokaryotic community composition and heterotrophic metabolic activities of biofilms grown un...

journal_title：Environmental microbiology

authors： Romaní AM,Borrego CM,Díaz-Villanueva V,Freixa A,Gich F,Ylla I

更新日期：2014-08-01 00:00:00

abstract：:Autophagy is a conserved degradation system in eukaryotic cells that includes non-selective and selective processes. Selective autophagy functions as a selective degradation mechanism for specific substrates in which autophagy-related protein 11 (ATG11) acts as an essential scaffold protein. In B. bassiana, there is a...

journal_title：Environmental microbiology

authors： Ding JL,Peng YJ,Chu XL,Feng MG,Ying SH

更新日期：2018-09-01 00:00:00

abstract：:Coralline algae are a crucial component of reef systems, stabilising reef substrate, providing habitat and contributing to accretion. Coralline algae and their surface microbial biofilms are also important as settlement cues for marine invertebrates, yet few studies address the impact of future environmental condition...

journal_title：Environmental microbiology

authors： Huggett MJ,McMahon K,Bernasconi R

更新日期：2018-08-01 00:00:00

abstract：:Variations in the patterns of diversity of symbionts have been described worldwide on Mimosa pudica, a pan-tropical invasive species that interacts with both α and β-rhizobia. In this study, we investigated if symbiont competitiveness can explain these variations and the apparent prevalence of β- over α-rhizobia. We d...

journal_title：Environmental microbiology

authors： Melkonian R,Moulin L,Béna G,Tisseyre P,Chaintreuil C,Heulin K,Rezkallah N,Klonowska A,Gonzalez S,Simon M,Chen WM,James EK,Laguerre G

更新日期：2014-07-01 00:00:00