Exploring eukaryotic versus prokaryotic ribosomal RNA recognition with aminoglycoside derivatives.

Abstract:

:New derivatives of aminoglycosides containing 6'-carboxylic acid or 6'-amide on their ring I were designed, synthesized and their ability to readthrough nonsense mutations was examined in vitro, along with the protein translation inhibition in prokaryotic and eukaryotic systems. The observed structure-activity relationships, along with the comparative molecular dynamics simulations within the eukaryotic rRNA decoding site, showed high sensitivity of 6'-position to substitution, indicating that the rational design of potent stop-codon read-through inducers requires consideration of not only the structure and energetics of the drug-RNA interaction but also the dynamics associated with that interaction.

journal_name

Medchemcomm

journal_title

MedChemComm

authors

Sabbavarapu NM,Pieńko T,Zalman BH,Trylska J,Baasov T

doi

10.1039/c8md00001h

subject

Has Abstract

pub_date

2018-02-02 00:00:00

pages

503-508

issue

3

eissn

2040-2503

issn

2040-2511

pii

c8md00001h

journal_volume

9

pub_type

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