Taxonomic structure and function of seed-inhabiting bacterial microbiota from common reed (Phragmites australis) and narrowleaf cattail (Typha angustifolia L.).

Abstract:

:The present study investigated the endophytic bacterial communities in the seeds of mature, natural common reed (Phragmites australis) and narrowleaf cattail (Typha angustifolia L.). Additionally, seed endophytic bacterial communities were compared with rhizospheric and root endophytic bacterial communities using Illumina-based sequencing. Seed endophytic bacterial communities were dominated by Proteobacteria (reed, 41.24%; cattail, 45.51%), followed by Bacteroidetes (reed, 12.01%; cattail, 10.41%), Planctomycetes (reed, 10.36%; cattail, 9.09%), Chloroflexi (reed, 8.72%; cattail, 6.45%), Thermotogae (reed, 5.43%; cattail, 6.11%), Tenericutes (reed, 3.63%; cattail, 3.97%) and Spirochaetes (reed, 3.32%; cattail, 3.90%). The dominant genera were Desulfobacter (reed, 8.02%; cattail, 8.96%), Geobacter (reed, 2.74%; cattail, 2.81%), Thiobacillus (reed, 2.71%; cattail, 2.41%), Sulfurimonas (reed, 2.47%; cattail, 2.31%), Methyloversatilis (reed, 2.29%; cattail, 2.05%) and Dechloromonas (reed, 1.13%; cattail, 1.48%). Obvious distinctions were observed among the respective rhizospheric, root endophytic and seed endophytic bacterial communities. Principal coordinate analysis with weighted UniFrac distance and the heat map analysis demonstrated that the seed endophytic bacterial communities were distinct assemblages rather than a subgroup of rhizobacterial communities or root endophytic bacterial communities. These results provide new information regarding endophytic bacteria associated with seeds of wetland plants and demonstrate a variety of genera that have a strong potential to enhance phytoremediation in the wetland ecosystem.

journal_name

Arch Microbiol

journal_title

Archives of microbiology

authors

Gao T,Shi XY

doi

10.1007/s00203-018-1493-3

subject

Has Abstract

pub_date

2018-08-01 00:00:00

pages

869-876

issue

6

eissn

0302-8933

issn

1432-072X

pii

10.1007/s00203-018-1493-3

journal_volume

200

pub_type

杂志文章
  • Sophorose induction of an intracellular b-glucosidase in Trichoderma.

    abstract::The disaccharide sophorose induces Trichoderma to increase a soluble intracellular b-glucosidase that hydrolyses cellobiose, sophorose, and p-nitrophenyl-b-D-glucopyranoside. Simultaneously, it depresses the activity of a similar insoluble enzyme that is associated with the mycelium. Gel electrophoresis indicates that...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00425807

    authors: Loewenberg JR

    更新日期:1984-01-01 00:00:00

  • Cytoplasmic contractions in growing fungal hyphae and their morphogenetic consequences.

    abstract::Video-enhanced light microscopy of the apical and subapical regions of growing hyphae of several fungal species revealed the existence of momentary synchronized motions of subcellular organelles. First discovered in a temperature-sensitive morphological mutant (ramosa-1) of Aspergillus niger, these seemingly spontaneo...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-005-0771-z

    authors: Reynaga-Peña CG,Bartnicki-García S

    更新日期:2005-05-01 00:00:00

  • Morphological and molecular characterization of Frankia sp. isolates from nodules of Alnus nepalensis Don.

    abstract::Nodules collected from Alnus nepalensis growing in mixed forest stands at three different sites around Shillong, were crushed in various culture media to obtain isolates of Frankia. The isolates were found to have typical Frankia morphology as revealed by the scanning electron microscope. Seedlings inoculated with iso...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00276476

    authors: Ganesh G,Misra AK,Chapelon C,Normand P

    更新日期:1994-01-01 00:00:00

  • Widespread predatory abilities in the genus Streptomyces.

    abstract::The natural role of antibiotics in the ecology of Streptomyces is debated and still largely unknown. The predatory myxobacteria and many other genera of prokaryotic epibiotic and wolfpack predators across different taxa possess secondary metabolites with antimicrobial action, and these compounds have a role in predati...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-014-0961-7

    authors: Kumbhar C,Mudliar P,Bhatia L,Kshirsagar A,Watve M

    更新日期:2014-04-01 00:00:00

  • Utilization of acidic amino acids and their amides by pseudomonads: role of periplasmic glutaminase-asparaginase.

    abstract::The acidic amino acids (Asp, Glu) and their amides (Asn, Gln) support rapid growth of a variety of Pseudomonas strains when provided as the sole source of carbon and nitrogen. All key enzymes of glutamate metabolism were detected in P. fluorescence, with glutaminase and asparaginase showing the highest specific activi...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-002-0511-6

    authors: Sonawane A,Klöppner U,Derst C,Röhm KH

    更新日期:2003-03-01 00:00:00

  • Anaplerotic metabolism of Aspergillus nidulans and its effect on biomass synthesis in carbon limited chemostats.

    abstract::Anaplerotic fixation of carbon dioxide by the fungus Aspergillus nidulans when grown under carbon-limited conditions was mediated by pyruvate carboxylase and a phosphoenol pyruvate (PEP)-metabolising enzyme which has been tentatively designated as PEP carboxylase. The activities of both enzymes were growth rate depend...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00422531

    authors: Bushell ME,Bull AT

    更新日期:1981-01-01 00:00:00

  • Alpha-mating-type-specific suppression and a-mating-type-specific enhancement by tunicamycin of sexual agglutinability in the yeast Saccharomyces cerevisiae.

    abstract::Effects of tunicamycin (TM) on the sexual agglutinability and zygote formation of Saccharomyces cerevisiae were studied using the two kinds of haploid strains, inducible and constitutive for sexual agglutinability. Induction of sexual agglutinability by opposite mating type sex pheromone of inducible strains was inhib...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00410896

    authors: Hasegawa S,Yanagishima N

    更新日期:1984-08-01 00:00:00

  • 3-Methylglutaconyl-CoA hydratase from Acinetobacter sp.

    abstract::Acinetobacter strain IVS-B aerobically grows on isovalerate as sole carbon and energy source. Isovalerate is metabolised via isovaleryl-CoA, an intermediate of the oxidative (S)-leucine degradation pathway. A 3-methylglutaconyl-CoA hydratase (EC 4.2.1.18) was purified 65-fold to apparent homogeneity from cell-free ext...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-006-0095-7

    authors: Mack M,Liesert M,Zschocke J,Peters V,Linder D,Buckel W

    更新日期:2006-05-01 00:00:00

  • Comparative immunological study of catalases in the genus Micrococcus.

    abstract::Double immunodiffusion tests were performed with crude extracts from various Micrococcus species and antisera against catalase of Micrococcus luteus CCM 169. Cell-free extracts of M. lylae ATCC 27566 exhibited good cross-reaction. Cell-free extracts or catalase enriched preparations of M. varians reacted very weakly a...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00429631

    authors: Rupprecht M,Schleifer KH

    更新日期:1977-07-26 00:00:00

  • Spore-to-spore agar culture of the myxomycete Physarum globuliferum.

    abstract::The ontogeny of the myxomycete Physarum globuliferum was observed on corn meal agar and hanging drop cultures without adding sterile oat flakes, bacteria or other microorganisms. Its complete life cycle including spore germination, myxamoebae, swarm cells, plasmodial development, and maturity of fructifications was de...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-009-0533-4

    authors: Liu P,Wang Q,Li Y

    更新日期:2010-02-01 00:00:00

  • An overview of in silico protein function prediction.

    abstract::As the protein databases continue to expand at an exponential rate, fed by daily uploads from multiple large scale genomic and metagenomic projects, the problem of assigning a function to each new protein has become the focus of significant research interest in recent times. Herein, we review the most recent advances ...

    journal_title:Archives of microbiology

    pub_type: 杂志文章,评审

    doi:10.1007/s00203-010-0549-9

    authors: Sleator RD,Walsh P

    更新日期:2010-03-01 00:00:00

  • Deoxyribonucleic acid base composition of Simonsiellaceae.

    abstract::The molar percentages of guanine plus cytosine in the DNA of 51 strains of Simonsiellaceae were determined by buoyant density ultracentrifugation of cell lysates in CsCl. The DNA base ratios ranged from 41-55 mole-% guanine plus cytosine. These values fall within the range known for the Order Cytophagales, the non-fru...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00492026

    authors: Kuhn DA,Gregory DA,Nyby MD,Mandel M

    更新日期:1977-06-20 00:00:00

  • The heat shock response in the cyanobacterium Synechocystis sp. Strain PCC 6803 and regulation of gene expression by HrcA and SigB.

    abstract::We report on the genome-wide response, based on DNA microarrays, of the cyanobacterium Synechocystis sp. PCC 6803 wild type and DeltasigB to a 15 min heat shock. Approximately 9% of the genes in wild type and DeltasigB were significantly regulated (P < 0.001) following this treatment, with chaperones induced the most....

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-006-0138-0

    authors: Singh AK,Summerfield TC,Li H,Sherman LA

    更新日期:2006-10-01 00:00:00

  • Assessment of the bioprotective potential of lactic acid bacteria against Listeria monocytogenes in ground beef.

    abstract::Lactic acid bacteria can be considered as natural biopreservative and good biotechnological alternative to food safety. In this study, the antilisterial compounds produced by Enterococcus isolates from the Patagonian environment and their effectiveness for the control of Listeria monocytogenes in a food model were stu...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-020-02118-0

    authors: Gomez JS,Parada RB,Vallejo M,Marguet ER,Bellomio A,Perotti N,de Carvalho KG

    更新日期:2021-01-02 00:00:00

  • Purification and characterization of an iron-containing alcohol dehydrogenase in extremely thermophilic bacterium Thermotoga hypogea.

    abstract::Thermotoga hypogea is an extremely thermophilic anaerobic bacterium capable of growing at 90 degrees C. It uses carbohydrates and peptides as carbon and energy sources to produce acetate, CO(2), H(2), L-alanine and ethanol as end products. Alcohol dehydrogenase activity was found to be present in the soluble fraction ...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-007-0217-x

    authors: Ying X,Wang Y,Badiei HR,Karanassios V,Ma K

    更新日期:2007-06-01 00:00:00

  • L-Aspartate fermentation by a free-living Campylobacter species.

    abstract::In the fermentation of L-aspartate by a free-living Campylobacter spec., the products formed were acetate, succinate, carbon dioxide and ammonia. The oxidative part of the fermentation pathway yielded acetate, succinate, carbon dioxide and ammonia, and the reductive part gave rise to the formation of succinate and amm...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00689359

    authors: Laanbroek HJ,Lambers JT,de Vos WM,Veldkamp H

    更新日期:1978-04-27 00:00:00

  • Isolation, characterization, and fermentative pattern of a novel thermotolerant Prototheca zopfii var. hydrocarbonea strain producing ethanol and CO2 from glucose at 40 degrees C.

    abstract::A novel thermotolerant strain of the achlorophyllous micro-alga Prototheca was isolated from a hot spring. The isolate was found to produce an appreciable amount of ethanol and CO2 from glucose under anoxic conditions at both 25 and 40 degrees C; this type of alcohol fermentation has not yet been reported in the genus...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-001-0384-0

    authors: Ueno R,Urano N,Suzuki M,Kimura S

    更新日期:2002-03-01 00:00:00

  • Microbial N-cycling gene abundance is affected by cover crop specie and development stage in an integrated cropping system.

    abstract::Grasses of the Urochloa genus have been widely used in crop-livestock integration systems or as cover crops in no-till systems such as in rotation with maize. Some species of Urochloa have mechanisms to reduce nitrification. However, the responses of microbial functions in crop-rotation systems with grasses and its co...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-020-01910-2

    authors: Rocha KF,Kuramae EE,Borges BMF,Leite MFA,Rosolem CA

    更新日期:2020-09-01 00:00:00

  • Expression of the bifunctional Bacillus subtilis TatAd protein in Escherichia coli reveals distinct TatA/B-family and TatB-specific domains.

    abstract::In the Tat protein export pathway of Gram-negative bacteria, TatA and TatB are homologous proteins that carry out distinct and essential functions in separate sub-complexes. In contrast, Gram-positive Tat systems usually lack TatB and the TatA protein is bifunctional. We have used a mutagenesis approach to delineate T...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-011-0699-4

    authors: Barnett JP,Lawrence J,Mendel S,Robinson C

    更新日期:2011-08-01 00:00:00

  • Sulfolane degradation by mixed cultures and a bacterial isolate identified as a Variovorax sp.

    abstract::Sulfolane (tetrahydrothiophene-1,1-dioxide) is used in the Sulfinol process for natural gas sweetening. At many sour-gas processing plants spills, landfills and leakage from unlined surface storage ponds have contaminated groundwaters with sulfolane. Due to its high water solubility and mobility in aquifers, sulfolane...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s002030000184

    authors: Greene EA,Beatty PH,Fedorak PM

    更新日期:2000-07-01 00:00:00

  • Complex I of Rhodobacter capsulatus and its role in reverted electron transport.

    abstract::The activities of NAD+-photoreduction and NADH/decyl-ubiquinone reductase in membrane preparations of Rhodobacter capsulatus changed to the same extent under different conditions. These results indicated that NADH:ubiquinone oxidoreductase (complex I) catalyzes the electron transport in the downhill direction (respira...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s002030050548

    authors: Herter SM,Kortlüke CM,Drews G

    更新日期:1998-02-01 00:00:00

  • The use of stable sulfur isotope labelling to elucidate sulfur metabolism by Clostridium pasteurianum.

    abstract::An unique isotope labelling experiment was conducted whereby mixtures of sulfate and sulfite of different isotopic compositions were metabolized by Clostridium pasteurianum. The results showed during reduction of 1 mM SO3= plus 1 mM SO4=, essentially all evolved H2S arose from the sulfite whereas in the case of cellul...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00446644

    authors: McCready RG,Laishley EJ,Krouse HR

    更新日期:1976-09-01 00:00:00

  • Close genetic relationship between Nitrobacter hamburgensis nitrite oxidoreductase and Escherichia coli nitrate reductases.

    abstract::The nitrite oxidoreductase (NOR) from the facultative nitrite-oxidizing bacterium Nitrobacter hamburgensis X14 was investigated genetically. In order to develop a probe for the gene norB, the N-terminal amino acid sequence of the NOR beta-subunit (NorB) was determined. Based on that amino acid sequence, an oligonucleo...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00245305

    authors: Kirstein K,Bock E

    更新日期:1993-01-01 00:00:00

  • Characteration of RNA synthesized during germination of Blastocladia ramosa Zoospores.

    abstract::The synthesis of RNA was studied during the synchronous germination of Blastocladia ramosa zoospores. Comparison of RNA synthesis during germination of B. ramosa and Blastocladiella emersonii zoospores revealed that B. ramosa has a longer lag time before RNA synthesis is initiated and, in addition, the rate of RNA syn...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00446529

    authors: Jaworski AJ,Torzilli AP

    更新日期:1975-12-31 00:00:00

  • The upstream region of the isocitrate lyase gene (UPR-ICL) of Candida tropicalis induces gene expression in both Saccharomyces cerevisiae and Escherichia coli by acetate via two distinct promoters.

    abstract::The upstream region of the isocitrate lyase gene (UPR-ICL, 1530bp) of an n-alkane-utilizable yeast, Candida tropicalis, induced gene expression in another yeast, Saccharomyces cerevisiae, when the yeasts were grown on acetate. Surprisingly, UPR-ICL displayed the same regulatory function in the bacterium Escherichia co...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00404204

    authors: Atomi H,Umemura K,Higashijima T,Kanai T,Yotsumoto Y,Teranishi Y,Ueda M,Tanaka A

    更新日期:1995-05-01 00:00:00

  • Maleylacetate reductase of Pseudomonas sp. strain B13: dechlorination of chloromaleylacetates, metabolites in the degradation of chloroaromatic compounds.

    abstract::The maleylacetate reductase of 3-chlorobenzoate-grown cells of Pseudomonas sp. strain B13 has been purified 50-fold. The enzyme converted 2-chloromaleylacetate to 3-oxoadipate with temporary occurrence of maleylacetate; 1 mol of chloride was eliminated during the conversion of 1 mol of 2-chloro- and 2,3-dichloromaleyl...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00276301

    authors: Kaschabek SR,Reineke W

    更新日期:1992-01-01 00:00:00

  • Penicillinase (beta-lactamase) formation by blue-green algae.

    abstract::Beta-Lactamase (penicillinase) activity was found in a number of strains of blue-green algea. In some cases, this enzyme permitted algae to overcome the inhibitory effects of penicillin. Production and localization of beta-lactamase were studied in a unicellular species, Coccochloris elabens (strain 7003), and in a fi...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00429338

    authors: Kushner DJ,Breuil C

    更新日期:1977-03-01 00:00:00

  • Lactobacillus plantarum ccl gene is non-essential, arginine-repressed and codes for a conserved protein in Firmicutes.

    abstract::Among proteins specifically found in most gram-positive bacteria of the phylum Firmicutes, conserved proteins of the family pfam06177-DUF988-COG4708 are of unknown function. The citrulline cluster-linked (ccl) gene of Lactobacillus plantarum codes one such protein and is adjacent to the citrulline biosynthesis operon ...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-005-0774-9

    authors: Arsène-Ploetze F,Nicoloff H,Bringel F

    更新日期:2005-08-01 00:00:00

  • Evidence for an arene oxide-NIH shift pathway in the transformation of naphthalene to 1-naphthol by Bacillus cereus.

    abstract::Bacillus cereus ATCC 14579 transformed naphthalene predominately to 1-naphthol. Experiments with [14C]naphthalene showed that over a 24 h period, B. cereus oxidized 5.2% of the added naphthalene. 1-Naphthol accounted for approximately 80% of the total metabolites. B. cereus incubated with naphthalene under the presenc...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00410891

    authors: Cerniglia CE,Freeman JP,Evans FE

    更新日期:1984-08-01 00:00:00

  • Flow cytometric screening and isolation of Escherichia coli clones which express surface antigens of the oil-degrading microorganism Acinetobacter calcoaceticus RAG-1.

    abstract::Flow cytometry (FCM) in conjunction with immunocytochemical-labeling was used to analyze and screen a population of Escherichia coli clones containing a genomic library from the oil-degrading microorganism Acinetobacter calcoaceticus RAG-1 surface antigens. Reconstruction experiments using mixed populations indicated ...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00422282

    authors: Minas W,Sahar E,Gutnick D

    更新日期:1988-01-01 00:00:00