Dynamical Binding Modes Determine Agonistic and Antagonistic Ligand Effects in the Prostate-Specific G-Protein Coupled Receptor (PSGR).

Abstract:

:We analysed the ligand-based activation mechanism of the prostate-specific G-protein coupled receptor (PSGR), which is an olfactory receptor that mediates cellular growth in prostate cancer cells. Furthermore, it is an olfactory receptor with a known chemically near identic antagonist/agonist pair, α- and β-ionone. Using a combined theoretical and experimental approach, we propose that this receptor is activated by a ligand-induced rearrangement of a protein-internal hydrogen bond network. Surprisingly, this rearrangement is not induced by interaction of the ligand with the network, but by dynamic van der Waals contacts of the ligand with the involved amino acid side chains, altering their conformations and intraprotein connectivity. Ligand recognition in this GPCR is therefore highly stereo selective, but seemingly lacks any ligand recognition via polar contacts. A putative olfactory receptor-based drug design scheme will have to take this unique mode of protein/ligand action into account.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Wolf S,Jovancevic N,Gelis L,Pietsch S,Hatt H,Gerwert K

doi

10.1038/s41598-017-16001-4

subject

Has Abstract

pub_date

2017-11-22 00:00:00

pages

16007

issue

1

issn

2045-2322

pii

10.1038/s41598-017-16001-4

journal_volume

7

pub_type

杂志文章
  • Tissue-specific Co-expression of Long Non-coding and Coding RNAs Associated with Breast Cancer.

    abstract::Inference of the biological roles of lncRNAs in breast cancer development remains a challenge. Here, we analyzed RNA-seq data in tumor and normal breast tissue samples from 18 breast cancer patients and 18 healthy controls and constructed a functional lncRNA-mRNA co-expression network. We revealed two distinctive co-e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep32731

    authors: Wu W,Wagner EK,Hao Y,Rao X,Dai H,Han J,Chen J,Storniolo AMV,Liu Y,He C

    更新日期:2016-09-06 00:00:00

  • The chorioallantoic membrane (CAM) assay for the study of human bone regeneration: a refinement animal model for tissue engineering.

    abstract::Biomaterial development for tissue engineering applications is rapidly increasing but necessitates efficacy and safety testing prior to clinical application. Current in vitro and in vivo models hold a number of limitations, including expense, lack of correlation between animal models and human outcomes and the need to...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep32168

    authors: Moreno-Jiménez I,Hulsart-Billstrom G,Lanham SA,Janeczek AA,Kontouli N,Kanczler JM,Evans ND,Oreffo RO

    更新日期:2016-08-31 00:00:00

  • Physiological responses to daily light exposure.

    abstract::Long daylength artificial light exposure associates with disorders, and a potential physiological mechanism has been proposed. However, previous studies have examined no more than three artificial light treatments and limited metabolic parameters, which have been insufficient to demonstrate mechanical responses. Here,...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24808

    authors: Yang Y,Yu Y,Yang B,Zhou H,Pan J

    更新日期:2016-04-21 00:00:00

  • Predictive assessment in pharmacogenetics of XRCC1 gene on clinical outcomes of advanced lung cancer patients treated with platinum-based chemotherapy.

    abstract::Published data have shown inconsistent results about the pharmacogenetics of XRCC1 gene on clinical outcomes of advanced lung cancer patients treated with platinum-based chemotherapy. This meta-analysis aimed to summarize published findings and provide more reliable association. A total of 53 eligible studies includin...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析

    doi:10.1038/srep16482

    authors: Yuan Z,Li J,Hu R,Jiao Y,Han Y,Weng Q

    更新日期:2015-11-20 00:00:00

  • Sewage outburst triggers Trichodesmium bloom and enhance N2 fixation rates.

    abstract::The southeastern Mediterranean Sea (SEMS) is a warm and sunlit marine environment with low ambient N concentration, thus considered ideal for diazotrophy by autotrophic diazotrophs such as Trichodesmium. Despite the favorable conditions, N2 fixation rates are often low and Trichodesmium has hardly been spotted in the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04622-8

    authors: Rahav E,Bar-Zeev E

    更新日期:2017-06-29 00:00:00

  • Coexistence of turbulence-like and glassy behaviours in a photonic system.

    abstract::Coexistence of physical phenomena can occur in quite unexpected ways. Here we demonstrate the first evidence in any physical system of the coexistence in the same set of measurements of two of the most challenging phenomena in complex systems: turbulence and spin glasses. We employ a quasi-one-dimensional random fibre...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35434-z

    authors: González IRR,Raposo EP,Macêdo AMS,de S Menezes L,Gomes ASL

    更新日期:2018-11-19 00:00:00

  • Allopurinol partially prevents disuse muscle atrophy in mice and humans.

    abstract::Disuse muscle wasting will likely affect everyone in his or her lifetime in response to pathologies such as joint immobilization, inactivity or bed rest. There are no good therapies to treat it. We previously found that allopurinol, a drug widely used to treat gout, protects muscle damage after exhaustive exercise and...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-21552-1

    authors: Ferrando B,Gomez-Cabrera MC,Salvador-Pascual A,Puchades C,Derbré F,Gratas-Delamarche A,Laparre L,Olaso-Gonzalez G,Cerda M,Viosca E,Alabajos A,Sebastiá V,Alberich-Bayarri A,García-Castro F,Viña J

    更新日期:2018-02-23 00:00:00

  • Improving Photocatalytic Performance from Bi2WO6@MoS2/graphene Hybrids via Gradual Charge Transferred Pathway.

    abstract::The charge transfer from the main catalyst to the cocatalyst is a key factor to enhance catalytic activity for photocatalytic nanocomposite materials. In order to enhance the charge transfer between Bi2WO6 and graphene, we inlet MoS2 as a "stepping-stone" into Bi2WO6 and graphene. Here, we report an effective strategy...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-03911-6

    authors: Liu M,Xue X,Yu S,Wang X,Hu X,Tian H,Chen H,Zheng W

    更新日期:2017-06-16 00:00:00

  • Electrochemical degradation and saponification of porcine adipose tissue.

    abstract::Body contouring achieved via subcutaneous adipose tissue reduction has notably advanced over the past century, from suction assisted lipectomy to techniques with reduced degrees of invasiveness including laser, radiofrequency, high frequency focused ultrasound, cryolipolysis, and drug-based injection approaches. These...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76678-y

    authors: Pham TT,Stokolosa AM,Borden PA,Hansen KD,Hong EM,Krasieva TB,Sivoraphonh RH,Moy WJ,Heidari AE,Lee LH,Kim EH,Sun CH,Jia W,Mo J-,Kim S,Hill MG,Wong BJF

    更新日期:2020-11-27 00:00:00

  • Reflection type metasurface designed for high efficiency vectorial field generation.

    abstract::We propose a reflection type metal-insulator-metal (MIM) metasurface composed of hybrid nano-antennas for comprehensive spatial engineering of the properties of optical fields. The capability of such structure is illustrated in the design of a device that can be used to produce a radially polarized vectorial beam for ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29626

    authors: Wang S,Zhan Q

    更新日期:2016-07-15 00:00:00

  • Acfs: accurate circRNA identification and quantification from RNA-Seq data.

    abstract::Circular RNAs (circRNAs) are a group of single-stranded RNAs in closed circular form. They are splicing-generated, widely expressed in various tissues and have functional implications in development and diseases. To facilitate genome-wide characterization of circRNAs using RNA-Seq data, we present a freely available s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep38820

    authors: You X,Conrad TO

    更新日期:2016-12-08 00:00:00

  • Computational modeling of human reasoning processes for interpretable visual knowledge: a case study with radiographers.

    abstract::Visual reasoning is critical in many complex visual tasks in medicine such as radiology or pathology. It is challenging to explicitly explain reasoning processes due to the dynamic nature of real-time human cognition. A deeper understanding of such reasoning processes is necessary for improving diagnostic accuracy and...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77550-9

    authors: Li Y,Cao H,Allen CM,Wang X,Erdelez S,Shyu CR

    更新日期:2020-12-10 00:00:00

  • Surface plasmon coupling dynamics in InGaN/GaN quantum-well structures and radiative efficiency improvement.

    abstract::Surface plasmonics from metal nanoparticles have been demonstrated as an effective way of improving the performance of low-efficiency light emitters. However, reducing the inherent losses of the metal nanoparticles remains a challenge. Here we study the enhancement properties by Ag nanoparticles for InGaN/GaN quantum-...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06392

    authors: Fadil A,Iida D,Chen Y,Ma J,Ou Y,Petersen PM,Ou H

    更新日期:2014-09-22 00:00:00

  • A proof-of-concept study for developing integrated two-photon microscopic and magnetic resonance imaging modality at ultrahigh field of 16.4 tesla.

    abstract::Functional magnetic resonance imaging (fMRI) based on the blood oxygen level dependent (BOLD) contrast has gained a prominent position in neuroscience for imaging neuronal activity and studying effective brain connectivity under working state and functional connectivity at resting state. However, the fundamental quest...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02864-0

    authors: Cui M,Zhou Y,Wei B,Zhu XH,Zhu W,Sanders MA,Ugurbil K,Chen W

    更新日期:2017-06-02 00:00:00

  • A Framework for Modeling Flood Depth Using a Hybrid of Hydraulics and Machine Learning.

    abstract::Solving river engineering problems typically requires river flow characterization, including the prediction of flow depth, flow velocity, and flood extent. Hydraulic models use governing equations of the flow in motion (conservation of mass and momentum principles) to predict the flow characteristics. However, solving...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-65232-5

    authors: Hosseiny H,Nazari F,Smith V,Nataraj C

    更新日期:2020-05-19 00:00:00

  • Elucidation of the bacterial communities associated with the harmful microalgae Alexandrium tamarense and Cochlodinium polykrikoides using nanopore sequencing.

    abstract::Interactions between microalgae and bacteria are often obligatory for harmful algal blooms (HABs). Here, we investigated the specific bacterial communities associated with Alexandrium tamarense and Cochlodinium polykrikoides, which cause ecological and economic damage during their blooms. To this end, the bacterial me...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23634-6

    authors: Shin H,Lee E,Shin J,Ko SR,Oh HS,Ahn CY,Oh HM,Cho BK,Cho S

    更新日期:2018-03-28 00:00:00

  • Lifespan and functionality of mycorrhizal fungal mycelium are uncoupled from host plant lifespan.

    abstract::Arbuscular mycorrhizal fungi (AMF) are obligate symbionts, living in associations with the roots of most land plants. AMF produce wide networks of extraradical mycelium (ERM) of indeterminate length, spreading from host roots into the surrounding soil and establishing belowground interconnections among plants belongin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-28354-5

    authors: Pepe A,Giovannetti M,Sbrana C

    更新日期:2018-07-06 00:00:00

  • Repeated surveying over 6 years reveals that fine-scale habitat variables are key to tropical mountain ant assemblage composition and functional diversity.

    abstract::High-altitude-adapted ectotherms can escape competition from dominant species by tolerating low temperatures at cooler elevations, but climate change is eroding such advantages. Studies evaluating broad-scale impacts of global change for high-altitude organisms often overlook the mitigating role of biotic factors. Yet...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80077-8

    authors: Muluvhahothe MM,Joseph GS,Seymour CL,Munyai TC,Foord SH

    更新日期:2021-01-08 00:00:00

  • Narrow band perfect absorber for maximum localized magnetic and electric field enhancement and sensing applications.

    abstract::Plasmonics offer an exciting way to mediate the interaction between light and matter, allowing strong field enhancement and confinement, large absorption and scattering at resonance. However, simultaneous realization of ultra-narrow band perfect absorption and electromagnetic field enhancement is challenging due to th...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24063

    authors: Yong Z,Zhang S,Gong C,He S

    更新日期:2016-04-05 00:00:00

  • Spatially non-uniform ground state and quantized vortices in a two-component Bose-Einstein condensate of magnons.

    abstract::A gas of magnons in magnetic films differs from all other known systems demonstrating Bose-Einstein condensation (BEC), since it possesses two energetically degenerate lowest-energy quantum states with non-zero wave vectors ±k(BEC). Therefore, BEC in this system results in a spontaneously formed two-component Bose-Ein...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep00482

    authors: Nowik-Boltyk P,Dzyapko O,Demidov VE,Berloff NG,Demokritov SO

    更新日期:2012-01-01 00:00:00

  • Variation of soil organic carbon and physical properties in relation to land uses in the Yellow River Delta, China.

    abstract::Soil physical properties and soil organic carbon (SOC) are considered as important factors of soil quality. Arable land, grassland, and forest land coexist in the saline-alkali reclamation area of the Yellow River Delta (YRD), China. Such different land uses strongly influence the services of ecosystem to induce soil ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77303-8

    authors: Jiao S,Li J,Li Y,Xu Z,Kong B,Li Y,Shen Y

    更新日期:2020-11-23 00:00:00

  • Publisher Correction: Impact of wave whitecapping on land falling tropical cyclones.

    abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-018-24117-4

    authors: Bruneau N,Toumi R,Wang S

    更新日期:2018-04-17 00:00:00

  • AM fungi patchiness and the clonal growth of Glechoma hederacea in heterogeneous environments.

    abstract::The effect of AM fungi spatial distribution on individual plant development may determine the dynamics of the whole plant community. We investigated whether clonal plants display, like for other resources, a foraging or a specialization response, to adapt to the distribution of AM fungi. Two separate experiments were ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37852

    authors: Vannier N,Bittebiere AK,Vandenkoornhuyse P,Mony C

    更新日期:2016-11-25 00:00:00

  • Functions of miR-146a and miR-222 in Tumor-associated Macrophages in Breast Cancer.

    abstract::Tumor-associated macrophages (TAMs) play critical roles in promoting tumor progression and invasion. However, the molecular mechanisms underlying TAM regulation remain to be further investigated and may make significant contributions to cancer treatment. Mammalian microRNAs (miRNAs) have recently been identified as im...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep18648

    authors: Li Y,Zhao L,Shi B,Ma S,Xu Z,Ge Y,Liu Y,Zheng D,Shi J

    更新日期:2015-12-22 00:00:00

  • Helicobacter pylori colonization and obesity - a Mendelian randomization study.

    abstract::Obesity is associated with substantial morbidity, costs, and decreased life expectancy, and continues to rise worldwide. While etiological understanding is needed for prevention, epidemiological studies indicated that colonization with Helicobacter pylori (H. pylori) may affect body mass index (BMI), but with inconsis...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-14106-4

    authors: den Hollander WJ,Broer L,Schurmann C,Meyre D,den Hoed CM,Mayerle J,Hofman A,Homuth G,Uitterlinden AG,Lerch MM,Kuipers EJ

    更新日期:2017-10-31 00:00:00

  • Ecological niche modeling of Astragalus membranaceus var. mongholicus medicinal plants in Inner Mongolia, China.

    abstract::Radix Astragali is commonly used in traditional Chinese medicine, and its quality is closely related to ecological factors, such as climate and soil, in the production area. To provide high-quality Radix Astragali to Chinese and foreign markets, we used maximum entropy model and statistical analysis method, combined w...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69391-3

    authors: Yang M,Li Z,Liu L,Bo A,Zhang C,Li M

    更新日期:2020-07-27 00:00:00

  • All-optical broadband ultrasonography of single cells.

    abstract::Cell mechanics play a key role in several fundamental biological processes, such as migration, proliferation, differentiation and tissue morphogenesis. In addition, many diseased conditions of the cell are correlated with altered cell mechanics, as in the case of cancer progression. For this there is much interest in ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08650

    authors: Dehoux T,Abi Ghanem M,Zouani OF,Rampnoux JM,Guillet Y,Dilhaire S,Durrieu MC,Audoin B

    更新日期:2015-03-03 00:00:00

  • System wide channel network analysis reveals hotspots of morphological change in anthropogenically modified regions of the Ganges Delta.

    abstract::The Ganges Brahmaputra Meghna Delta (GBMD) is a large and complex coastal system whose channel network is vulnerable to morphological changes caused by sea level rise, subsidence, anthropogenic modifications, and changes to water and sediment loads. Locating and characterizing change is particularly challenging becaus...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69688-3

    authors: Jarriel T,Isikdogan LF,Bovik A,Passalacqua P

    更新日期:2020-07-30 00:00:00

  • Ionization injection of highly-charged copper ions for laser driven acceleration from ultra-thin foils.

    abstract::Laser-driven ion acceleration is often analyzed assuming that ionization reaches a steady state early in the interaction of the laser pulse with the target. This assumption breaks down for materials of high atomic number for which the ionization occurs concurrently with the acceleration process. Using particle-in-cell...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-37085-6

    authors: Li J,Arefiev AV,Bulanov SS,Kawahito D,Bailly-Grandvaux M,Petrov GM,McGuffey C,Beg FN

    更新日期:2019-01-24 00:00:00

  • Adaptive immunity against gut microbiota enhances apoE-mediated immune regulation and reduces atherosclerosis and western-diet-related inflammation.

    abstract::Common features of immune-metabolic and inflammatory diseases such as metabolic syndrome, diabetes, obesity and cardiovascular diseases are an altered gut microbiota composition and a systemic pro-inflammatory state. We demonstrate that active immunization against the outer membrane protein of bacteria present in the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29353

    authors: Saita D,Ferrarese R,Foglieni C,Esposito A,Canu T,Perani L,Ceresola ER,Visconti L,Burioni R,Clementi M,Canducci F

    更新日期:2016-07-07 00:00:00