Multimodal surface matching with higher-order smoothness constraints.

Abstract:

:In brain imaging, accurate alignment of cortical surfaces is fundamental to the statistical sensitivity and spatial localisation of group studies, and cortical surface-based alignment has generally been accepted to be superior to volume-based approaches at aligning cortical areas. However, human subjects have considerable variation in cortical folding, and in the location of functional areas relative to these folds. This makes alignment of cortical areas a challenging problem. The Multimodal Surface Matching (MSM) tool is a flexible, spherical registration approach that enables accurate registration of surfaces based on a variety of different features. Using MSM, we have previously shown that driving cross-subject surface alignment, using areal features, such as resting state-networks and myelin maps, improves group task fMRI statistics and map sharpness. However, the initial implementation of MSM's regularisation function did not penalize all forms of surface distortion evenly. In some cases, this allowed peak distortions to exceed neurobiologically plausible limits, unless regularisation strength was increased to a level which prevented the algorithm from fully maximizing surface alignment. Here we propose and implement a new regularisation penalty, derived from physically relevant equations of strain (deformation) energy, and demonstrate that its use leads to improved and more robust alignment of multimodal imaging data. In addition, since spherical warps incorporate projection distortions that are unavoidable when mapping from a convoluted cortical surface to the sphere, we also propose constraints that enforce smooth deformation of cortical anatomies. We test the impact of this approach for longitudinal modelling of cortical development for neonates (born between 31 and 43 weeks of post-menstrual age) and demonstrate that the proposed method increases the biological interpretability of the distortion fields and improves the statistical significance of population-based analysis relative to other spherical methods.

journal_name

Neuroimage

journal_title

NeuroImage

authors

Robinson EC,Garcia K,Glasser MF,Chen Z,Coalson TS,Makropoulos A,Bozek J,Wright R,Schuh A,Webster M,Hutter J,Price A,Cordero Grande L,Hughes E,Tusor N,Bayly PV,Van Essen DC,Smith SM,Edwards AD,Hajnal J,Jenkinson M

doi

10.1016/j.neuroimage.2017.10.037

subject

Has Abstract

pub_date

2018-02-15 00:00:00

pages

453-465

eissn

1053-8119

issn

1095-9572

pii

S1053-8119(17)30864-9

journal_volume

167

pub_type

杂志文章
  • Deep brain stimulation of the periaqueductal gray releases endogenous opioids in humans.

    abstract::Deep brain stimulation (DBS) of the periaqueductal gray (PAG) is used in the treatment of severe refractory neuropathic pain. We tested the hypothesis that DBS releases endogenous opioids to exert its analgesic effect using [11C]diprenorphine (DPN) positron emission tomography (PET). Patients with de-afferentation pai...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.08.038

    authors: Sims-Williams H,Matthews JC,Talbot PS,Love-Jones S,Brooks JC,Patel NK,Pickering AE

    更新日期:2017-02-01 00:00:00

  • Frequency-specific modulation of connectivity in the ipsilateral sensorimotor cortex by different forms of movement initiation.

    abstract::A consistent finding in motor EEG research is a bilateral attenuation of oscillatory activity over sensorimotor regions close to the onset of an upcoming unilateral hand movement. In contrast, little is known about how movement initiation affects oscillatory activity, especially in the hemisphere ipsilateral to the mo...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2017.07.054

    authors: Wang BA,Viswanathan S,Abdollahi RO,Rosjat N,Popovych S,Daun S,Grefkes C,Fink GR

    更新日期:2017-10-01 00:00:00

  • Dynamic neural mechanisms underlie race disparities in social cognition.

    abstract::Race disparities in behavior may emerge in several ways, some of which may be independent of implicit bias. To mitigate the pernicious effects of different race disparities for racial minorities, we must understand whether they are rooted in perceptual, affective, or cognitive processing with regard to race perception...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.02.043

    authors: Cassidy BS,Krendl AC

    更新日期:2016-05-15 00:00:00

  • Cytology and functionally correlated circuits of human posterior cingulate areas.

    abstract::Human posterior cingulate cortex (PCC) and retrosplenial cortex (RSC) form the posterior cingulate gyrus, however, monkey connection and human imaging studies suggest that PCC area 23 is not uniform and atlases mislocate RSC. We histologically assessed these regions in 6 postmortem cases, plotted a flat map, and chara...

    journal_title:NeuroImage

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.neuroimage.2005.07.048

    authors: Vogt BA,Vogt L,Laureys S

    更新日期:2006-01-15 00:00:00

  • Occipito-parietal cortex activation during visuo-spatial imagery in early blind humans.

    abstract::Using positron emission tomography, regional cerebral blood flow was studied in five early blind and five control volunteers during visuo-spatial imagery. Subjects were instructed to generate a mental representation of verbally provided bidimensional patterns that were placed in a grid and to assess pattern symmetry i...

    journal_title:NeuroImage

    pub_type: 临床试验,杂志文章

    doi:10.1016/s1053-8119(03)00153-8

    authors: Vanlierde A,De Volder AG,Wanet-Defalque MC,Veraart C

    更新日期:2003-07-01 00:00:00

  • Myelin water imaging of multiple sclerosis at 7 T: correlations with histopathology.

    abstract::Myelin water imaging (MWI) promises to be invaluable in understanding neurological diseases like MS. However, a limitation of MWI is signal to noise ratio. Recently, a number of investigators have performed MWI at field strengths higher than 1.5 T. Our goal was to determine if myelin water imaging at increased SNR, ar...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2007.12.008

    authors: Laule C,Kozlowski P,Leung E,Li DK,Mackay AL,Moore GR

    更新日期:2008-05-01 00:00:00

  • Capturing the spatiotemporal dynamics of self-generated, task-initiated thoughts with EEG and fMRI.

    abstract::The temporal structure of self-generated cognition is a key attribute to the formation of a meaningful stream of consciousness. When at rest, our mind wanders from thought to thought in distinct mental states. Despite the marked importance of ongoing mental processes, it is challenging to capture and relate these stat...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.03.029

    authors: Bréchet L,Brunet D,Birot G,Gruetter R,Michel CM,Jorge J

    更新日期:2019-07-01 00:00:00

  • Social vision: sustained perceptual enhancement of affective facial cues in social anxiety.

    abstract::Heightened perception of facial cues is at the core of many theories of social behavior and its disorders. In the present study, we continuously measured electrocortical dynamics in human visual cortex, as evoked by happy, neutral, fearful, and angry faces. Thirty-seven participants endorsing high versus low generaliz...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.08.080

    authors: McTeague LM,Shumen JR,Wieser MJ,Lang PJ,Keil A

    更新日期:2011-01-15 00:00:00

  • In vivo 2D J-resolved magnetic resonance spectroscopy of rat brain with a 3-T clinical human scanner.

    abstract::A clinical 3-T scanner equipped with a custom-made transmit/receive birdcage coil was used to collect 2D J-resolved single-voxel spectroscopy in vivo of rat brain. Four adult Wistar rats were scanned twice each, with a 2-week interval. Voxel size was approximately 5 x 10 x 5 mm(3). Total spectroscopic acquisition time...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2003.12.046

    authors: Adalsteinsson E,Hurd RE,Mayer D,Sailasuta N,Sullivan EV,Pfefferbaum A

    更新日期:2004-05-01 00:00:00

  • Imaging brain amyloid deposition using grating-based differential phase contrast tomography.

    abstract::One of the core pathological features of Alzheimer's disease (AD) is the accumulation of amyloid plaques in the brain. Current efforts of medical imaging research aim at visualizing amyloid plaques in living patients in order to evaluate the progression of the pathology, but also to facilitate the diagnosis of AD at t...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.03.029

    authors: Pinzer BR,Cacquevel M,Modregger P,McDonald SA,Bensadoun JC,Thuering T,Aebischer P,Stampanoni M

    更新日期:2012-07-16 00:00:00

  • Dynamical exploration of the repertoire of brain networks at rest is modulated by psilocybin.

    abstract::Growing evidence from the dynamical analysis of functional neuroimaging data suggests that brain function can be understood as the exploration of a repertoire of metastable connectivity patterns ('functional brain networks'), which potentially underlie different mental processes. The present study characterizes how th...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.05.060

    authors: Lord LD,Expert P,Atasoy S,Roseman L,Rapuano K,Lambiotte R,Nutt DJ,Deco G,Carhart-Harris RL,Kringelbach ML,Cabral J

    更新日期:2019-10-01 00:00:00

  • Theta-burst stimulation: remote physiological and local behavioral after-effects.

    abstract::Theta-burst stimulation (TBS), a novel repetitive transcranial magnetic stimulation (TMS) protocol, is capable of suppressing the amplitude of contralateral motor-evoked potentials (MEP) for several minutes after the end of a conditioning train over the motor cortex. It remains unknown whether TBS leads to effects on ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2007.11.037

    authors: Stefan K,Gentner R,Zeller D,Dang S,Classen J

    更新日期:2008-03-01 00:00:00

  • Evaluating and validating two methods for estimating brain structure volumes: tessellation and simple pixel counting.

    abstract::Developments in imaging technology have made three-dimensional visualization of internal brain structures possible with excellent resolution. Since improved visualization implies improved measurement, these advances hold promise to more accurately measure the volumes of internal structures. As new technologies and tec...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.1994.1004

    authors: Arndt S,Swayze V,Cizadlo T,O'Leary D,Cohen G,Yuh WT,Ehrhardt JC,Andreasen NC

    更新日期:1994-06-01 00:00:00

  • Thalamic cholinergic innervation makes a specific bottom-up contribution to signal detection: Evidence from Parkinson's disease patients with defined cholinergic losses.

    abstract::Successful behavior depends on the ability to detect and respond to relevant cues, especially under challenging conditions. This essential component of attention has been hypothesized to be mediated by multiple neuromodulator systems, but the contributions of individual systems (e.g., cholinergic, dopaminergic) have r...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2017.02.006

    authors: Kim K,Müller MLTM,Bohnen NI,Sarter M,Lustig C

    更新日期:2017-04-01 00:00:00

  • Parietal magnetic stimulation delays visuomotor mental rotation at increased processing demands.

    abstract::Visuomotor rotation (VMR) is a variant of the classic mental rotation paradigm. Subjects perform a center-out arm reaching movement, with the instruction to point clockwise or anticlockwise away from the direction of a reaction signal by a prespecified amount. Like classic mental rotation (MR) tasks, there is a linear...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2002.1266

    authors: Bestmann S,Thilo KV,Sauner D,Siebner HR,Rothwell JC

    更新日期:2002-11-01 00:00:00

  • Multi-voxel coding of stimuli, rules, and responses in human frontoparietal cortex.

    abstract::In human functional magnetic resonance imaging (fMRI), a characteristic pattern of frontal and parietal activity is produced by many different cognitive demands. Although frontoparietal cortex has been shown to represent a variety of task features in different contexts, little is known about detailed representation of...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.04.035

    authors: Woolgar A,Thompson R,Bor D,Duncan J

    更新日期:2011-05-15 00:00:00

  • Activation and connectivity patterns of the presupplementary and dorsal premotor areas during free improvisation of melodies and rhythms.

    abstract::Free, i.e. non-externally cued generation of movement sequences is fundamental to human behavior. We have earlier hypothesized that the dorsal premotor cortex (PMD), which has been consistently implicated in cognitive aspects of planning and selection of spatial motor sequences may be particularly important for the fr...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.06.024

    authors: de Manzano Ö,Ullén F

    更新日期:2012-10-15 00:00:00

  • Characterizing Inscapes and resting-state in MEG: Effects in typical and atypical development.

    abstract::Examining the brain at rest is a powerful approach used to understand the intrinsic properties of typical and disordered human brain function, yet task-free paradigms are associated with greater head motion, particularly in young and/or clinical populations such as autism spectrum disorder (ASD) and attention-deficit/...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.117524

    authors: Vandewouw MM,Dunkley BT,Lerch JP,Anagnostou E,Taylor MJ

    更新日期:2021-01-15 00:00:00

  • Unraveling the spatiotemporal brain dynamics during a simulated reach-to-eat task.

    abstract::The reach-to-eat task involves a sequence of action components including looking, reaching, grasping, and feeding. While cortical representations of individual action components have been mapped in human functional magnetic resonance imaging (fMRI) studies, little is known about the continuous spatiotemporal dynamics ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2018.10.028

    authors: Chen CF,Kreutz-Delgado K,Sereno MI,Huang RS

    更新日期:2019-01-15 00:00:00

  • Conscious auditory perception related to long-range synchrony of gamma oscillations.

    abstract::While the role of synchronized oscillatory activity in the gamma-band frequency range for conscious perception is well established in the visual domain, there is limited evidence concerning neurophysiological mechanisms in conscious auditory perception. In the current study, we addressed this issue with 64-channel EEG...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.06.012

    authors: Steinmann S,Leicht G,Ertl M,Andreou C,Polomac N,Westerhausen R,Friederici AD,Mulert C

    更新日期:2014-10-15 00:00:00

  • Generating original ideas: The neural underpinning of originality.

    abstract::One of the key aspects of creativity is the ability to produce original ideas. Originality is defined in terms of the novelty and rarity of an idea and is measured by the infrequency of the idea compared to other ideas. In the current study we focused on divergent thinking (DT) - the ability to produce many alternate ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.05.030

    authors: Mayseless N,Eran A,Shamay-Tsoory SG

    更新日期:2015-08-01 00:00:00

  • Neural simulation of action: a unifying mechanism for motor cognition.

    abstract::Paradigms drawn from cognitive psychology have provided new insight into covert stages of action. These states include not only intending actions that will eventually be executed, but also imagining actions, recognizing tools, learning by observation, or even understanding the behavior of other people. Studies using t...

    journal_title:NeuroImage

    pub_type: 杂志文章,评审

    doi:10.1006/nimg.2001.0832

    authors: Jeannerod M

    更新日期:2001-07-01 00:00:00

  • Piecemeal recruitment of left-lateralized brain areas during reading: a spatio-functional account.

    abstract::Neuroimaging studies of reading converge to suggest that linguistically elementary stimuli are confined to the activation of bilateral posterior regions, whereas linguistically complex stimuli additionally recruit left hemispheric anterior regions, raising the hypotheses of a gradual bilateral-to-left and a posterior-...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2008.08.008

    authors: Levy J,Pernet C,Treserras S,Boulanouar K,Berry I,Aubry F,Demonet JF,Celsis P

    更新日期:2008-11-15 00:00:00

  • Dysfunctional supplementary motor area implication during attention and time estimation tasks in schizophrenia: a PET-O15 water study.

    abstract::Results of this PET-O15 water activation study confirm the implication of supplementary motor areas during time estimation tasks. They also show that the cortical-subcortical network associated with temporal processing is impaired in schizophrenia. Following recent proposals of time dynamic networks, this impairment m...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2004.09.010

    authors: Ortuño FM,Lopez P,Ojeda N,Cervera S

    更新日期:2005-01-15 00:00:00

  • A blueprint for target motion: fMRI reveals perceived sequential complexity to modulate premotor cortex.

    abstract::The execution of movements that are guided by an increasingly complex target motion is known to draw on premotor cortices. Whole-brain functional magnetic resonance imaging was used to investigate whether, in the absence of any movement, attending to and predicting increasingly complex target motion also rely on premo...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2002.1183

    authors: Schubotz RI,von Cramon DY

    更新日期:2002-08-01 00:00:00

  • Empirically grounding grounded cognition: the case of color.

    abstract::Grounded cognition theories hold that the neural states involved in experiencing objects play a direct functional role in representing and accessing object knowledge from memory. However, extant data marshaled to support this view are also consistent with an opposing view that perceptuo-motor activations occur only fo...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.05.025

    authors: Amsel BD,Urbach TP,Kutas M

    更新日期:2014-10-01 00:00:00

  • On the need for bundle-specific microstructure kernels in diffusion MRI.

    abstract::Probing microstructure with diffusion magnetic resonance imaging (dMRI) on a scale orders of magnitude below the imaging resolution relies on biophysical modelling of the signal response in the tissue. The vast majority of these biophysical models of diffusion in white matter assume that the measured dMRI signal is th...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.116460

    authors: Christiaens D,Veraart J,Cordero-Grande L,Price AN,Hutter J,Hajnal JV,Tournier JD

    更新日期:2020-03-01 00:00:00

  • Spatial gene expression analysis of neuroanatomical differences in mouse models.

    abstract::MRI is a powerful modality to detect neuroanatomical differences that result from mutations and treatments. Knowing which genes drive these differences is important in understanding etiology, but candidate genes are often difficult to identify. We tested whether spatial gene expression data from the Allen Brain Instit...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2017.08.065

    authors: Fernandes DJ,Ellegood J,Askalan R,Blakely RD,Dicicco-Bloom E,Egan SE,Osborne LR,Powell CM,Raznahan A,Robins DM,Salter MW,Sengar AS,Veenstra-VanderWeele J,Henkelman RM,Lerch JP

    更新日期:2017-12-01 00:00:00

  • A Bayesian framework for simultaneously modeling neural and behavioral data.

    abstract::Scientists who study cognition infer underlying processes either by observing behavior (e.g., response times, percentage correct) or by observing neural activity (e.g., the BOLD response). These two types of observations have traditionally supported two separate lines of study. The first is led by cognitive modelers, ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2013.01.048

    authors: Turner BM,Forstmann BU,Wagenmakers EJ,Brown SD,Sederberg PB,Steyvers M

    更新日期:2013-05-15 00:00:00

  • Cortical functional connectivity indexes arousal state during sleep and anesthesia.

    abstract::Disruption of cortical connectivity likely contributes to loss of consciousness (LOC) during both sleep and general anesthesia, but the degree of overlap in the underlying mechanisms is unclear. Both sleep and anesthesia comprise states of varying levels of arousal and consciousness, including states of largely mainta...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.116627

    authors: Banks MI,Krause BM,Endemann CM,Campbell DI,Kovach CK,Dyken ME,Kawasaki H,Nourski KV

    更新日期:2020-05-01 00:00:00