Abstract:
:The patterns of evolution and expression of tissue-specific genes are poorly understood beyond sex-specific genes. Accordingly, we identified 3,191 tissue-specific genes and 38,745 common genes using 22 RNA-seq datasets from cultivated peanut. The expression levels of tissue-specific genes were significantly lower than those of common genes. Further, the expression levels of sex-specific genes were significantly higher than those of somatic tissue-specific genes. Among sex-specific genes, the expression levels of gynoecium-specific genes were significantly higher than those of androecium-specific genes. Function-specific genes were lacking among tissue-specific genes, and tissue-specific gene annotations overlapped among different tissues. Duplicate gene pairs were classified as homogeneous pairs expressed within the same tissue or heterogeneous pairs expressed in different tissues. Heterogeneous gene pairs evolved more rapidly than homogeneous gene pairs. In addition, somatic tissue-specific genes evolved faster than sex-specific genes. Molecular signatures of selection indicated that somatic tissue-specific genes have mainly experienced relaxed selection, while sex-specific genes have been under stronger selective constraint. Somatic tissue-specific genes had higher codon usage bias than sex-specific genes. These contrasting patterns between somatic tissue-specific and sex-specific genes provide new insights into the basic biology and evolution of peanut, an important crop.
journal_name
Sci Repjournal_title
Scientific reportsauthors
Song H,Zhang Q,Tian P,Nan Zdoi
10.1038/s41598-017-09905-8subject
Has Abstractpub_date
2017-08-21 00:00:00pages
9016issue
1issn
2045-2322pii
10.1038/s41598-017-09905-8journal_volume
7pub_type
杂志文章abstract::The Early Cretaceous Greater Ontong Java Event in the Pacific Ocean may have covered ca. 1% of the Earth's surface with volcanism. It has puzzled scientists trying to explain its origin by several mechanisms possible on Earth, leading others to propose an extraterrestrial trigger to explain this event. A large oceanic...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep00268
更新日期:2012-01-01 00:00:00
abstract::Acute traumatic intraparenchymal hematoma (tICH) expansion is a devastating neurological complication that is associated with poor outcome after cerebral contusion. This study aimed to develop and validate a novel noncontrast computed tomography (CT) (NCCT) multihematoma fuzzy sign to predict acute tICH expansion. In ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-021-81685-8
更新日期:2021-01-21 00:00:00
abstract::Viral capsids are metastable structures that perform many essential processes; they also act as robust cages during the extracellular phase. Viruses can use multifunctional proteins to optimize resources (e.g., VP3 in avian infectious bursal disease virus, IBDV). The IBDV genome is organized as ribonucleoproteins (RNP...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep13486
更新日期:2015-09-04 00:00:00
abstract::In recent pioneer experiment, a strong spin-orbit coupling, with equal Rashba and Dresselhaus strengths, has been created in a trapped Bose-Einstein condensate. Moreover, many exotic superfluid phenomena induced by this strong spin-orbit coupling have been predicted. In this report, we show that this novel spin-orbit ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep03166
更新日期:2013-11-07 00:00:00
abstract::Body mass index (BMI) is associated with increased future risk of inflammatory bowel disease(IBD) particularly Crohn's disease(CD), where associations with high and low BMI have been observed. Most studies are based on adult women. We aimed to explore the impact of BMI in men entering adult life on their long-term ris...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-42642-8
更新日期:2019-04-23 00:00:00
abstract::Archaeologically defined Upper Palaeolithic (UP, 45,000-10,000 years ago) "cultures" are often used as proxies to designate fossil populations. While recent genomic studies have partly clarified the complex relationship between European UP "cultures" and past population dynamics, they leave open numerous questions reg...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-78841-x
更新日期:2020-12-14 00:00:00
abstract::Weight regain is one of the most common problems in the long-term after bariatric surgery. It is unknown if high-intensity exercise programs applied in late phases of post-surgical follow-up could counteract this trend. After a 3-year follow-up, 21 patients underwent sleeve gastrectomy were randomized into an exercise...
journal_title:Scientific reports
pub_type: 杂志文章,随机对照试验
doi:10.1038/s41598-020-60044-z
更新日期:2020-02-20 00:00:00
abstract::Nontuberculous mycobacteria (NTM) are environmental bacteria increasingly associated to public health problems. In water systems, free-living amoebae (FLA) feed on bacteria by phagocytosis, but several bacteria, including many NTM, are resistant to this predation. Thus, FLA can be seen as a training ground for pathoge...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep46270
更新日期:2017-04-10 00:00:00
abstract::Increased risk of comorbidities has been reported in Rheumatic and Musculoskeletal Diseases (RMD). We aimed to evaluate the prevalence and pattern of comorbidities in RMD patients nationwide, to identify multimorbidity clusters and to evaluate the gap between recommendations and real screening. Cross-sectional, multic...
journal_title:Scientific reports
pub_type: 杂志文章,多中心研究
doi:10.1038/s41598-020-64732-8
更新日期:2020-05-06 00:00:00
abstract::Rickettsiales are important zoonotic pathogens, causing severe disease in humans globally. Although mosquitoes are an important vector for diverse pathogens, with the exception of members of the genus Wolbachia little is known about their role in the transmission of Rickettsiales. Herein, Rickettsiales were identified...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep38770
更新日期:2016-12-09 00:00:00
abstract::Neonatal Fc-receptor (FcRn), the major histocompatibility complex (MHC) class I-like Fc-receptor, transports immunoglobuline G (IgG) across cell layers, extending IgG half-life in circulation and providing newborns with humoral immunity. IgG1 and IgG2 have similar half-lives, yet IgG2 displays lower foetal than matern...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-40731-2
更新日期:2019-05-14 00:00:00
abstract::Allicin (diallylthiosulfinate) is a defence molecule from garlic (Allium sativum L.) with broad antimicrobial activities in the low µM range against Gram-positive and -negative bacteria, including antibiotic resistant strains, and fungi. Allicin reacts with thiol groups and can inactivate essential enzymes. However, a...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-25154-9
更新日期:2018-04-30 00:00:00
abstract::Human phosphoglucomutase 1 (PGM1) is an evolutionary conserved enzyme that belongs to the ubiquitous and ancient α-D-phosphohexomutases, a large enzyme superfamily with members in all three domains of life. PGM1 catalyzes the bi-directional interconversion between α-D-glucose 1-phosphate (G1P) and α-D-glucose 6-phosph...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-62548-0
更新日期:2020-03-27 00:00:00
abstract::This study evaluated the impact of mechanically stimulated saliva on initial bacterial colonization. Interaction between oral bacteria and both unstimulated and stimulated saliva was examined in vitro by laying labeled bacteria over SDS-PAGE-separated salivary proteins. The effects of chewing on in vivo biofilm, micro...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-48211-3
更新日期:2019-08-14 00:00:00
abstract::Data-independent acquisition mass spectrometry promises higher performance in terms of quantification and reproducibility compared to data-dependent acquisition mass spectrometry methods. To enable high-accuracy quantification of Staphylococcus aureus proteins, we have developed a global ion library for data-independe...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-10059-w
更新日期:2017-09-08 00:00:00
abstract::In the last decade, extracellular vesicles (EVs) have become a hot topic. The findings on EVs content and effects have made them a major field of interest in cancer research. EVs, are able to be internalized through integrins expressed in parental cells, in a tissue specific manner, as a key step of cancer progression...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-62920-0
更新日期:2020-04-16 00:00:00
abstract::The ejection of internal organs, i.e., evisceration, is a well-known phenomenon in sea-cucumbers. We report the ability of a member of the Chordate phyla, the tropical ascidian Polycarpa mytiligera, to eviscerate and regenerate its gut within 12 days, and to rebuild its branchial sac within 19 days. Evisceration occur...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep09614
更新日期:2015-04-16 00:00:00
abstract::Amphibian oocytes have been extensively used for heterologous expression of membrane proteins for studying their biochemical and biophysical properties. So far, Xenopus laevis is the main amphibian used as oocytes source to express aquaglyceroporins in order to assess water and solutes permeability. However, this well...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-37069-6
更新日期:2019-01-10 00:00:00
abstract::Porphyra 334 (P334), a mycosporine-like amino acid (MAA), is a secondary metabolite found in diverse marine and terrestrial organisms and has several beneficial effects on fibroblast proliferation, wound healing, and antioxidant activity. Here, we report that P334 accelerates the cell reprogramming process of mouse ta...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-60680-5
更新日期:2020-02-28 00:00:00
abstract::The exponential growth in knowledge has resulted in a better understanding of the lactation process in a wide variety of animals. However, the underlying genetic mechanisms are not yet clearly known. In order to identify the mechanisms involved in the lactation process, various mehods, including meta-analysis, weighte...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-021-81888-z
更新日期:2021-01-27 00:00:00
abstract::Miscarriage affects ~20% of pregnancies and maternal infections account for ~15% of early miscarriages. Chlamydia trachomatis (Ct) has been associated with miscarriage but the underlying mechanisms are unknown. Successful implantation requires endometrial stromal cell (ESC) decidualisation. Maintenance of pregnancy re...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-02223-z
更新日期:2017-05-17 00:00:00
abstract::Mt. Spurr is the largest active volcano in Alaska of high explosive potential. The most recent activity, including two recent magmatic eruptions in 1953 and 1992, has occurred via the flanking Crater Peak. From 2004 to 2006, strong seismicity, gas flux, and heating were observed in the summit area, which had remained ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-35453-w
更新日期:2018-11-30 00:00:00
abstract::Here we present the first report of a carbon-γ-Fe₂O₃ nanoparticle composite of mesoporous carbon, bearing COOH- and phenolic OH- functional groups on its surface, a remarkable and magnetically separable adsorbent, for the radioactive material emitted by the Fukushima Daiichi nuclear power plant accident. Contaminated ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep06053
更新日期:2014-08-13 00:00:00
abstract::Lophatheri Herba (LH), dried leaf of Lophatherum gracile Brongn, has long been used to reduce thirst and treat fever and inflammation in Chinese medicine. Recent studies have shown that LH has anti-viral, anti-bacterial, anti-cancer, anti-oxidant, diuretic, and hyperglycemic properties. However, the effects of an etha...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep36277
更新日期:2016-11-03 00:00:00
abstract::The temporomandibular muscle dysfunction is characterized by myofascial pain and is more prevalent in women of reproductive age. Sex steroid hormones are hypothetically involved in the dysfunction, but few are the studies of steroid receptors in masticatory and mastication-related muscles. Our aim was to determine est...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-54774-y
更新日期:2019-12-05 00:00:00
abstract::Although the link between sleep disturbances and dopamine (DA)-related neurological and neuropsychiatric disorders is well established, the impact of sleep alterations on neuronal activity of midbrain DA-ergic structures is currently unknown. Here, using wildtype C57Bl mice, we investigated the circadian- and sleep-re...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-25770-5
更新日期:2018-05-17 00:00:00
abstract::Fusarium head blight (FHB) is a devastating disease of wheat worldwide. Fhb1 is the most consistently reported quantitative trait locus (QTL) for FHB resistance breeding. A pore-forming toxin-like (PFT) gene at Fhb1 was first cloned by map-based cloning and found to confer FHB resistance in wheat. Proteins often inter...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-52030-x
更新日期:2019-10-29 00:00:00
abstract::Chronic hepatitis viral infection, alcoholic intoxication, and obesity cause liver fibrosis, which progresses to decompensated liver cirrhosis, a disease for which medical demands cannot be met. Since there are currently no approved anti-fibrotic therapies for established liver fibrosis, the development of novel modal...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-43298-0
更新日期:2019-05-02 00:00:00
abstract::This work aimed to use artificial intelligence to predict subjective refraction from wavefront aberrometry data processed with a novel polynomial decomposition basis. Subjective refraction was converted to power vectors (M, J0, J45). Three gradient boosted trees (XGBoost) algorithms were trained to predict each power ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-65417-y
更新日期:2020-05-22 00:00:00
abstract::Physical activity (PA) is known to influence cognitive function. However, the impact of PA on patients with cerebrovascular disease (CVD) has not yet been elucidated. PA and cognitive function have not been measured simultaneously over time, which makes it difficult to evaluate their relationship. The purpose of this ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-40460-6
更新日期:2019-03-07 00:00:00