Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding.

Abstract:

:Proteins are the primary effectors of cellular function, including cellular metabolism, structural dynamics, and information processing. However, quantitative characterization of proteins at the single-cell level is challenging due to the tiny amount of protein available. Here, we present Abseq, a method to detect and quantitate proteins in single cells at ultrahigh throughput. Like flow and mass cytometry, Abseq uses specific antibodies to detect epitopes of interest; however, unlike these methods, antibodies are labeled with sequence tags that can be read out with microfluidic barcoding and DNA sequencing. We demonstrate this novel approach by characterizing surface proteins of different cell types at the single-cell level and distinguishing between the cells by their protein expression profiles. DNA-tagged antibodies provide multiple advantages for profiling proteins in single cells, including the ability to amplify low-abundance tags to make them detectable with sequencing, to use molecular indices for quantitative results, and essentially limitless multiplexing.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Shahi P,Kim SC,Haliburton JR,Gartner ZJ,Abate AR

doi

10.1038/srep44447

subject

Has Abstract

pub_date

2017-03-14 00:00:00

pages

44447

issn

2045-2322

pii

srep44447

journal_volume

7

pub_type

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