Abstract:
UNLABELLED:As diet is considered the major regulator of the gut ecosystem, the overall objective of this work was to demonstrate that a detailed knowledge of the phytochemical composition of food could add to our understanding of observed changes in functionality and activity of the gut microbiota. We used metatranscriptomic data from a human dietary intervention study to develop a network that consists of >400 compounds present in the administered plant-based diet linked to 609 microbial targets in the gut. Approximately 20% of the targeted bacterial proteins showed significant changes in their gene expression levels, while functional and topology analyses revealed that proteins in metabolic networks with high centrality are the most "vulnerable" targets. This global view and the mechanistic understanding of the associations between microbial gene expression and dietary molecules could be regarded as a promising methodological approach for targeting specific bacterial proteins that impact human health. IMPORTANCE:It is a general belief that microbiome-derived drugs and therapies will come to the market in coming years, either in the form of molecules that mimic a beneficial interaction between bacteria and host or molecules that disturb a harmful interaction or proteins that can modify the microbiome or bacterial species to change the balance of "good" and "bad" bacteria in the gut microbiome. However, among the numerous factors, what has proven the most influential for modulating the microbial composition of the gut is diet. In line with this, we demonstrate here that a systematic analysis of the interactions between the small molecules present in our diet and the gut bacterial proteome holds great potential for designing dietary interventions to improve human health.
journal_name
mBiojournal_title
mBioauthors
Ni Y,Li J,Panagiotou Gdoi
10.1128/mBio.01263-15subject
Has Abstractpub_date
2015-10-27 00:00:00pages
e01263-15issue
6issn
2150-7511pii
mBio.01263-15journal_volume
6pub_type
杂志文章相关文献
mBio文献大全abstract::The Pseudomonas quinolone signal (PQS) is an important quorum-sensing molecule in Pseudomonas aeruginosa that also mediates its own packaging and transport by stimulating outer membrane vesicle (OMV) formation. Because OMVs have been implicated in many virulence-associated behaviors, it is critical that we understand ...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.01034-17
更新日期:2017-08-08 00:00:00
abstract::UDP-N-acetylglucosamine (UDP-GlcNAc), the main product of the hexosamine biosynthetic pathway, is an important metabolite in protozoan parasites since its sugar moiety is incorporated into glycosylphosphatidylinositol (GPI) glycolipids and N- and O-linked glycans. Apicomplexan parasites have a hexosamine pathway compa...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.02045-20
更新日期:2020-10-20 00:00:00
abstract:UNLABELLED:In vivo transcriptional analyses of microbial pathogens are often hampered by low proportions of pathogen biomass in host organs, hindering the coverage of full pathogen transcriptome. We aimed to address the transcriptome profiles of Candida albicans, the most prevalent fungal pathogen in systemically infec...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.00942-15
更新日期:2015-09-22 00:00:00
abstract:UNLABELLED:Small colony variants (SCVs) are naturally occurring subpopulations of bacteria. The clinical characteristics and treatment outcomes of patients with prosthetic joint infection (PJI) caused by staphylococcal SCVs are unknown. This study was a retrospective series of 113 patients with staphylococcal PJI, with...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.01910-14
更新日期:2014-09-30 00:00:00
abstract::Distinct mammalian RNA viruses trigger Dicer-mediated production of virus-derived small-interfering RNAs (vsiRNA) and encode unrelated proteins to suppress vsiRNA biogenesis. However, the mechanism and function of the mammalian RNA interference (RNAi) response are poorly understood. Here, we characterized antiviral RN...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.03278-19
更新日期:2020-08-04 00:00:00
abstract:UNLABELLED:Toll-like receptors (TLRs) are sensors that recognize molecular patterns from viruses, bacteria, and fungi to initiate innate immune responses to invading pathogens. The emergence of highly pathogenic coronaviruses severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome ...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.00638-15
更新日期:2015-05-26 00:00:00
abstract:UNLABELLED:The current tuberculosis (TB) vaccine, Mycobacterium bovis Bacillus Calmette-Guérin (BCG), provides insufficient protection against pulmonary TB. Previously, we generated a listeriolysin-expressing recombinant BCG strain, which to date has successfully completed phase I and phase IIa clinical trials. In an a...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.00679-16
更新日期:2016-05-24 00:00:00
abstract::The type III secretion system (T3SS) forms the functional core of injectisomes, protein transporters that allow bacteria to deliver virulence factors into their hosts for infection, and flagella, which are critical for many pathogens to reach the site of infection. In spite of intensive genetic and biochemical studies...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.00988-18
更新日期:2018-06-26 00:00:00
abstract::The availability of energy has significant impact on cell physiology. However, the role of cellular metabolism in bacterial pathogenesis is not understood. We investigated the dynamics of central metabolism during virulence induction by surface sensing and quorum sensing in early-stage biofilms of the multidrug-resist...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.02730-18
更新日期:2020-03-10 00:00:00
abstract::Staphylococcus aureus is an important human pathogen whose success is largely attributed to its vast arsenal of virulence factors that facilitate its invasion into, and survival within, the human host. The expression of these virulence factors is controlled by the quorum sensing accessory gene regulator (Agr) system. ...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.00796-19
更新日期:2019-08-06 00:00:00
abstract::Most bacteria and archaea use the tubulin homologue FtsZ as its central organizer of cell division. In Gram-negative Escherichia coli bacteria, FtsZ recruits cytosolic, transmembrane, periplasmic, and outer membrane proteins, assembling the divisome that facilitates bacterial cell division. One such divisome component...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.01346-18
更新日期:2018-09-11 00:00:00
abstract::Heme oxygenase-1 (HO-1) is a stress response antioxidant enzyme which catalyzes the degradation of heme released during inflammation. HO-1 expression is upregulated in both experimental and human Mycobacterium tuberculosis infection, and in patients it is a biomarker of active disease. Whether the enzyme plays a prote...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.01675-16
更新日期:2016-10-25 00:00:00
abstract::Protein kinase R (PKR) plays a major role in activating host immunity during infection by sensing double-stranded RNA (dsRNA) produced by viruses. Once activated by dsRNA, PKR phosphorylates the translation factor eukaryotic initiation factor 2α (eIF2α), halting cellular translation. Many viruses have methods of inhib...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.00668-19
更新日期:2019-04-23 00:00:00
abstract::The disabling disorder known as chronic fatigue syndrome or myalgic encephalomyelitis (CFS/ME) has been linked in two independent studies to infection with xenotropic murine leukemia virus-related virus (XMRV) and polytropic murine leukemia virus (pMLV). Although the associations were not confirmed in subsequent studi...
journal_title:mBio
pub_type: 杂志文章,多中心研究
doi:10.1128/mBio.00266-12
更新日期:2012-09-18 00:00:00
abstract:UNLABELLED:Mycobacterium tuberculosis depends on aerobic respiration for growth and utilizes an aa3-type cytochrome c oxidase for terminal electron transfer. Cytochrome c maturation in bacteria requires covalent attachment of heme to apocytochrome c, which occurs outside the cytoplasmic membrane. We demonstrate that in...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.00475-13
更新日期:2013-09-17 00:00:00
abstract::Bacterial viruses, or bacteriophages, are highly abundant in the biosphere and have a major impact on microbial populations. Many examples of phage interactions with their hosts, including establishment of dormant lysogenic and active lytic states, have been characterized at the level of the individual cell. However, ...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.01884-19
更新日期:2019-09-10 00:00:00
abstract::Nonlytic exocytosis is a process in which previously ingested microbes are expelled from host phagocytes with the concomitant survival of both cell types. This process has been observed in the interaction of Cryptococcus spp. and other fungal cells with phagocytes as distant as mammalian, bird, and fish macrophages an...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.02085-20
更新日期:2020-09-08 00:00:00
abstract::Members of the genus Mycobacterium are the most prevalent cause of infectious diseases. Mycobacteria have a complex cell envelope containing a peptidoglycan layer and an additional arabinogalactan polymer to which a mycolic acid bilayer is linked; this complex, multilayered cell wall composition (mAGP) is conserved am...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.02213-16
更新日期:2017-02-07 00:00:00
abstract::Pseudomonas aeruginosa is an opportunistic pathogen and the leading cause of morbidity and mortality in cystic fibrosis (CF) patients. P. aeruginosa infections are difficult to treat due to a number of antibiotic resistance mechanisms and the organism's propensity to form multicellular biofilms. Epidemic strains of P....
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.01828-18
更新日期:2019-01-29 00:00:00
abstract:UNLABELLED:Many viruses induce acute T cell-independent (TI) B cell responses due to their repetitive epitopes and the induction of innate cytokines. Nevertheless, T cell help is thought necessary for the development of long-lasting antiviral antibody responses in the form of long-lived plasma cells and memory B cells....
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.00812-13
更新日期:2013-11-05 00:00:00
abstract:UNLABELLED:Many filamentous cyanobacteria produce specialized nitrogen-fixing cells called heterocysts, which are located at semiregular intervals along the filament with about 10 to 20 photosynthetic vegetative cells in between. Nitrogen fixation in these complex multicellular bacteria depends on metabolite exchange b...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.02109-14
更新日期:2015-03-17 00:00:00
abstract:UNLABELLED:Small RNAs play a critical role in host-pathogen interaction. Indeed, small RNA-mediated silencing or RNA interference (RNAi) is one of the earliest forms of antiviral immunity. Although it represents the main defense system against viruses in many organisms, the antiviral role of RNAi has not been clearly p...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.00698-13
更新日期:2013-11-19 00:00:00
abstract::ZipA is an essential cell division protein in Escherichia coli Together with FtsA, ZipA tethers dynamic polymers of FtsZ to the cytoplasmic membrane, and these polymers are required to guide synthesis of the cell division septum. This dynamic behavior of FtsZ has been reconstituted on planar lipid surfaces in vitro, v...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.01008-18
更新日期:2018-06-19 00:00:00
abstract:UNLABELLED:The ESKAPE (Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter species) pathogens cause an increasing number of nosocomial infections worldwide since they escape the inhibitory effect of the available antibiotics and the immun...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.01842-15
更新日期:2016-01-26 00:00:00
abstract::Adult Drosophila melanogaster raised in the absence of symbiotic bacteria have fewer intestinal stem cell divisions and a longer life span than their conventionally reared counterparts. However, we do not know if increased stem cell divisions are essential for symbiont-dependent regulation of longevity. To determine i...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.01114-18
更新日期:2018-07-31 00:00:00
abstract::Chlamydiales species are obligate intracellular bacteria lacking a classical peptidoglycan sacculus but relying on peptidoglycan synthesis for cytokinesis. While septal peptidoglycan biosynthesis seems to be regulated by MreB actin and its membrane anchor RodZ rather than FtsZ tubulin in Chlamydiales, the mechanism of...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.01128-19
更新日期:2019-07-16 00:00:00
abstract:UNLABELLED:Fast, definitive diagnosis of Creutzfeldt-Jakob disease (CJD) is important in assessing patient care options and transmission risks. Real-time quaking-induced conversion (RT-QuIC) assays of cerebrospinal fluid (CSF) and nasal-brushing specimens are valuable in distinguishing CJD from non-CJD conditions but h...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.02451-14
更新日期:2015-01-20 00:00:00
abstract:UNLABELLED:Toll-like receptor 4 is thought to have a primary role in host defense against Escherichia coli bladder colonization, based on mouse models of urinary tract infection using C3H/HeJ female mice. This strain carries a point mutation in the Tlr4 gene, which renders the mice unresponsive to lipopolysaccharide (L...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.00094-11
更新日期:2011-05-31 00:00:00
abstract::Hepatitis E virus (HEV), a single-strand positive-sense RNA virus, is an understudied but important human pathogen. The virus can establish infection at a number of host tissues, including the small intestine and liver, causing acute and chronic hepatitis E as well as certain neurological disorders. The retinoic acid-...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.03103-19
更新日期:2020-01-14 00:00:00
abstract::Zika virus is a mosquito-borne flavivirus which can cause severe disease in humans, including microcephaly and other congenital malformations in newborns and Guillain-Barré syndrome in adults. There are currently no approved prophylactics or therapeutics for Zika virus; the development of a safe and effective vaccine ...
journal_title:mBio
pub_type: 杂志文章
doi:10.1128/mBio.02861-18
更新日期:2019-04-02 00:00:00