Two contemporaneous mitogenomes from terminal Pleistocene burials in eastern Beringia.

Abstract:

:Pleistocene residential sites with multiple contemporaneous human burials are extremely rare in the Americas. We report mitochondrial genomic variation in the first multiple mitochondrial genomes from a single prehistoric population: two infant burials (USR1 and USR2) from a common interment at the Upward Sun River Site in central Alaska dating to ∼11,500 cal B.P. Using a targeted capture method and next-generation sequencing, we determined that the USR1 infant possessed variants that define mitochondrial lineage C1b, whereas the USR2 genome falls at the root of lineage B2, allowing us to refine younger coalescence age estimates for these two clades. C1b and B2 are rare to absent in modern populations of northern North America. Documentation of these lineages at this location in the Late Pleistocene provides evidence for the extent of mitochondrial diversity in early Beringian populations, which supports the expectations of the Beringian Standstill Model.

authors

Tackney JC,Potter BA,Raff J,Powers M,Watkins WS,Warner D,Reuther JD,Irish JD,O'Rourke DH

doi

10.1073/pnas.1511903112

subject

Has Abstract

pub_date

2015-11-10 00:00:00

pages

13833-8

issue

45

eissn

0027-8424

issn

1091-6490

pii

1511903112

journal_volume

112

pub_type

历史文章,杂志文章
  • Calculation of the three-dimensional structure of the membrane-bound portion of melittin from its amino acid sequence.

    abstract::The structure of the NH2-terminal, 20-residue membrane-bound portion of melittin has been computed with empirical energies (ECEPP, Empirical Conformational Energy Program for Peptides). First, a search was made for long stretches of nonpolar residues. Then, the low-energy conformations of these segments were built up ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.79.16.5107

    authors: Pincus MR,Klausner RD,Scheraga HA

    更新日期:1982-08-01 00:00:00

  • Charge transport in molecular electronic junctions: compression of the molecular tunnel barrier in the strong coupling regime.

    abstract::Molecular junctions are essentially modified electrodes familiar to electrochemists where the electrolyte is replaced by a conducting "contact." It is generally hypothesized that changing molecular structure will alter system energy levels leading to a change in the transport barrier. Here, we show the conductance of ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1201557109

    authors: Sayed SY,Fereiro JA,Yan H,McCreery RL,Bergren AJ

    更新日期:2012-07-17 00:00:00

  • Inhibition of replication of normal adrenocortical cells in culture by adrenocorticotropin.

    abstract::Adrenocorticotropic hormone (ACTH) inhibited [3H]thymidine incorporation in normal adrenocortical cells of adult rats in culture, with a concomitant increase in corticosterone production and a characteristic retraction of cells. Both dibutyryl cyclic AMP and an analog of ACTH, which produces virtually no cyclic AMP, i...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.72.1.113

    authors: Ramachandran J,Suyama AT

    更新日期:1975-01-01 00:00:00

  • Membrane-mobility agent-promoted fusion of erythrocytes: fusibility is correlated with attack by calcium-activated cytoplasmic proteases on membrane proteins.

    abstract::Rat, but not human, erythrocytes undergo fusion promoted by the membrane-mobility agent 2-(2-methoxyethoxy)-ethyl cis-8-(2-octylcyclopropyl)octanoate (A2C). The difference in behavior is correlated with rat erythrocyte membrane protein degradation caused by Ca2+-activated proteases. The human erythrocyte is deficient ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.24.7542

    authors: Kosower NS,Glaser T,Kosower EM

    更新日期:1983-12-01 00:00:00

  • Transgenic study of parallelism in plant morphological evolution.

    abstract::Developmental constraint is indicated when one finds that similar genetic mechanisms are responsible for independent origins of the same derived phenotype. We studied three independent origins of rosette flowering within the mustard family and attempted to evaluate the extent to which the same mechanisms were involved...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0401824101

    authors: Yoon HS,Baum DA

    更新日期:2004-04-27 00:00:00

  • Her6 regulates the neurogenetic gradient and neuronal identity in the thalamus.

    abstract::During vertebrate brain development, the onset of neuronal differentiation is under strict temporal control. In the mammalian thalamus and other brain regions, neurogenesis is regulated also in a spatially progressive manner referred to as a neurogenetic gradient, the underlying mechanism of which is unknown. Here we ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0910894106

    authors: Scholpp S,Delogu A,Gilthorpe J,Peukert D,Schindler S,Lumsden A

    更新日期:2009-11-24 00:00:00

  • Independently gated multiple substates of an epithelial chloride-channel protein.

    abstract::We have purified a protein from Necturus maculosus gallbladder cells that forms chloride channels in an artificial membrane. The same protein apparently can form channels that are highly selective for chloride but can have conductances varying from 9 to about 150 pS. The high-conductance channels are blocked by the mo...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.90.12.5691

    authors: Finn AL,Dillard M,Gaido M

    更新日期:1993-06-15 00:00:00

  • Depletion layer dynamics of polyelectrolyte solutions under Poiseuille flow.

    abstract::Complex liquids flow through channels faster than expected, an effect attributed to the formation of low-viscosity depletion layers at the boundaries. Characterization of depletion layer length scale, concentration, and dynamics has remained elusive due in large part to the lack of suitable real-space experimental tec...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1900623116

    authors: Park SJ,Shakya A,King JT

    更新日期:2019-08-13 00:00:00

  • Simplified method in polynucleotide helix-coil transition theory including binding of complementary monomer.

    abstract::The grand partition function for a long linear system of alternating alpha and beta sequences with the restraint of a fixed number, N(alphabeta), of alphabeta boundaries depends in an extremely simple way on the alpha-sequence and beta-sequence grand partition functions, xi(alpha) and xi(beta). When the restraint is r...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.69.5.1165

    authors: Hill TL

    更新日期:1972-05-01 00:00:00

  • Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae.

    abstract::Infections caused by drug-resistant bacteria are a major problem worldwide. Carbapenem-resistant Klebsiella pneumoniae, most notably isolates classified as multilocus sequence type (ST) 258, have emerged as an important cause of hospital deaths. ST258 isolates are predominantly multidrug resistant, and therefore infec...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1321364111

    authors: Deleo FR,Chen L,Porcella SF,Martens CA,Kobayashi SD,Porter AR,Chavda KD,Jacobs MR,Mathema B,Olsen RJ,Bonomo RA,Musser JM,Kreiswirth BN

    更新日期:2014-04-01 00:00:00

  • Sequence optimization and designability of enzyme active sites.

    abstract::We recently found that many residues in enzyme active sites can be computationally predicted by the optimization of scoring functions based on substrate binding affinity, subject to constraints on the geometry of catalytic residues and protein stability. Here, we explore the generality of this surprising observation. ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0505397102

    authors: Chakrabarti R,Klibanov AM,Friesner RA

    更新日期:2005-08-23 00:00:00

  • Materials by numbers: computations as tools of discovery.

    abstract::Current issues pertaining to theoretical simulations of materials, with a focus on systems of nanometer-scale dimensions, are discussed. The use of atomistic simulations as high-resolution numerical experiments, enabling and guiding formulation and testing of analytic theoretical descriptions, is demonstrated through ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0408038102

    authors: Landman U

    更新日期:2005-05-10 00:00:00

  • Inhibitors of glycoprotein processing alter T-cell proliferative responses to antigen and to interleukin 2.

    abstract::Most of the cell-surface molecules involved in T-cell immune responses are N-linked glycoproteins. We have investigated the effects of inhibitors of glycoprotein processing on specific T-cell functions, with the dual aims of examining the functional role of carbohydrate and of testing the usefulness of such compounds ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.85.15.5644

    authors: Wall KA,Pierce JD,Elbein AD

    更新日期:1988-08-01 00:00:00

  • Activation of human B cells mediated through two distinct cell surface differentiation antigens, Bp35 and Bp50.

    abstract::Two human B-cell differentiation antigens, Bp35 and Bp50, apparently play distinct roles as signal receptors in B-cell activation. Monoclonal antibodies (mAbs) to either Bp35 or Bp50 deliver positive signals to B cells that stimulate their transition through the cell cycle. mAb to Bp35, like anti-immunoglobulin antibo...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.12.4494

    authors: Clark EA,Ledbetter JA

    更新日期:1986-06-01 00:00:00

  • Intermembrane transport: Glycerophospholipid homeostasis of the Gram-negative cell envelope.

    abstract::This perspective addresses recent advances in lipid transport across the Gram-negative inner and outer membranes. While we include a summary of previously existing literature regarding this topic, we focus on the maintenance of lipid asymmetry (Mla) pathway. Discovered in 2009 by the Silhavy group [J. C. Malinverni, T...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章,评审

    doi:10.1073/pnas.1902026116

    authors: Powers MJ,Trent MS

    更新日期:2019-08-27 00:00:00

  • Molecular and electrophysiological characterization of a mechanosensitive channel expressed in the chloroplasts of Chlamydomonas.

    abstract::MscS is a mechanosensitive channel that is ubiquitous among bacteria. Recent progress in the genome projects has revealed that homologs of MscS are also present in eukaryotes, but whether they operate as ion channels is unknown. In this study we cloned MSC1, a homolog of MscS in Chlamydomonas, and examined its functio...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0609996104

    authors: Nakayama Y,Fujiu K,Sokabe M,Yoshimura K

    更新日期:2007-04-03 00:00:00

  • Structures of the visual chromophores and related pigments: a conformational basis of visual excitation.

    abstract::A detailed conformational analysis of the known crystal structures of vitamin A, carotenoid, and xanthenoid derivatives has been made. These studies suggest that the visual chromophore 11-cis retinal and its isomers may each occur in several different conformational states, which would be expected to have different li...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.69.6.1569

    authors: Sundaralingam M,Beddell C

    更新日期:1972-06-01 00:00:00

  • Developmental hearing loss eliminates long-term potentiation in the auditory cortex.

    abstract::Severe hearing loss during early development is associated with deficits in speech and language acquisition. Although functional studies have shown a deafness-induced alteration of synaptic strength, it is not known whether long-term synaptic plasticity depends on auditory experience. In this study, sensorineural hear...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0607177104

    authors: Kotak VC,Breithaupt AD,Sanes DH

    更新日期:2007-02-27 00:00:00

  • Genetic contributions to white matter architecture revealed by diffusion tensor imaging in Williams syndrome.

    abstract::Little is known about genetic regulation of the development of white matter. This knowledge is critical in understanding the pathophysiology of neurodevelopmental syndromes associated with altered cognition as well as in elucidating the genetics of normal human cognition. The hemideletion of approximately 25 genes on ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0704311104

    authors: Marenco S,Siuta MA,Kippenhan JS,Grodofsky S,Chang WL,Kohn P,Mervis CB,Morris CA,Weinberger DR,Meyer-Lindenberg A,Pierpaoli C,Berman KF

    更新日期:2007-09-18 00:00:00

  • Type II platelet-activating factor-acetylhydrolase is essential for epithelial morphogenesis in Caenorhabditis elegans.

    abstract::Type II platelet-activating factor-acetylhydrolase [PAF-AH (II)] is an N-myristoylated enzyme that contains a lipase/esterase catalytic motif and selectively hydrolyzes the sn-2 acetyl ester of PAF and other short-chain acyl groups attached to phosphoglycerides. However, the physiological role of this enzyme remains t...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0405507101

    authors: Inoue T,Sugimoto A,Suzuki Y,Yamamoto M,Tsujimoto M,Inoue K,Aoki J,Arai H

    更新日期:2004-09-07 00:00:00

  • Dietary branched chain amino acids ameliorate injury-induced cognitive impairment.

    abstract::Neurological dysfunction caused by traumatic brain injury results in profound changes in net synaptic efficacy, leading to impaired cognition. Because excitability is directly controlled by the balance of excitatory and inhibitory activity, underlying mechanisms causing these changes were investigated using lateral fl...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0910280107

    authors: Cole JT,Mitala CM,Kundu S,Verma A,Elkind JA,Nissim I,Cohen AS

    更新日期:2010-01-05 00:00:00

  • Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding.

    abstract::Several 400- to 800-kb murine chromosome domains switch from early to late replication during loss of pluripotency, accompanied by a stable form of gene silencing that is resistant to reprogramming. We found that, whereas enhanced nuclease accessibility correlated with early replication genome-wide, domains that switc...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1207185109

    authors: Takebayashi S,Dileep V,Ryba T,Dennis JH,Gilbert DM

    更新日期:2012-07-31 00:00:00

  • A putative Ca2+-binding protein: structure of the light subunit of porcine calpain elucidated by molecular cloning and protein sequence analysis.

    abstract::cDNA clones specific for the light subunit of porcine calpain I have been isolated from a porcine kidney cDNA library. The complete primary structure of the light subunit has been revealed by nucleotide sequence analysis of the cDNA clones isolated and amino acid sequence analysis of peptides isolated from the purifie...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.82.18.6075

    authors: Sakihama T,Kakidani H,Zenita K,Yumoto N,Kikuchi T,Sasaki T,Kannagi R,Nakanishi S,Ohmori M,Takio K

    更新日期:1985-09-01 00:00:00

  • Variable genetic architectures produce virtually identical molecules in bacterial symbionts of fungus-growing ants.

    abstract::Small molecules produced by Actinobacteria have played a prominent role in both drug discovery and organic chemistry. As part of a larger study of the actinobacterial symbionts of fungus-growing ants, we discovered a small family of three previously unreported piperazic acid-containing cyclic depsipeptides, gerumycins...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1515348112

    authors: Sit CS,Ruzzini AC,Van Arnam EB,Ramadhar TR,Currie CR,Clardy J

    更新日期:2015-10-27 00:00:00

  • Negative selection of CD4+ CD8+ thymocytes by T-cell receptor peptide antagonists.

    abstract::Antigen-induced activation of T cells can be specifically inhibited by antigen analogs that have been termed T-cell receptor peptide antagonists. These antagonists appear to act by inducing the formation of nonstimulatory or partially stimulatory complexes between T-cell receptors and the major histocompatibility comp...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.91.9.4057

    authors: Page DM,Alexander J,Snoke K,Appella E,Sette A,Hedrick SM,Grey HM

    更新日期:1994-04-26 00:00:00

  • Phospholipase A2 and phospholipase C are activated by distinct GTP-binding proteins in response to alpha 1-adrenergic stimulation in FRTL5 thyroid cells.

    abstract::In FRTL5 rat thyroid cells, norepinephrine, by interacting with alpha 1-adrenergic receptors, stimulates inositol phosphate formation, through activation of phospholipase C, and arachidonic acid release. Recent studies have shown that GTP-binding proteins couple several types of receptors to phospholipase C activation...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.19.7201

    authors: Burch RM,Luini A,Axelrod J

    更新日期:1986-10-01 00:00:00

  • The secreted Ipa complex of Shigella flexneri promotes entry into mammalian cells.

    abstract::The bacterial pathogen Shigella flexneri causes bacillary dysentery in humans by invading coloncytes. Upon contact with epithelial cells, S. flexneri elicits localized plasma membrane projections sustained by long actin filaments which engulf the microorganism. The products necessary for Shigella entry include three s...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.93.3.1254

    authors: Ménard R,Prévost MC,Gounon P,Sansonetti P,Dehio C

    更新日期:1996-02-06 00:00:00

  • Pericytes in capillaries are contractile in vivo, but arterioles mediate functional hyperemia in the mouse brain.

    abstract::Modern functional imaging techniques of the brain measure local hemodynamic responses evoked by neuronal activity. Capillary pericytes recently were suggested to mediate neurovascular coupling in brain slices, but their role in vivo remains unexplored. We used two-photon microscopy to study in real time pericytes and ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1011321108

    authors: Fernández-Klett F,Offenhauser N,Dirnagl U,Priller J,Lindauer U

    更新日期:2010-12-21 00:00:00

  • Alternative splicing of human papillomavirus type-16 E6/E6* early mRNA is coupled to EGF signaling via Erk1/2 activation.

    abstract::Certain types of human papillomaviruses (HPVs) are etiologically linked to cervical cancer. Their transforming capacity is encoded by a polycistronic premRNA, where alternative splicing leads to the translation of functional distinct proteins such as E6, E6*, and E7. Here we show that splicing of HPV16 E6/E7 ORF casse...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1002620107

    authors: Rosenberger S,De-Castro Arce J,Langbein L,Steenbergen RD,Rösl F

    更新日期:2010-04-13 00:00:00

  • A long-range attraction between aggregating 3T3 cells mediated by near-infrared light scattering.

    abstract::At what range can a mammalian cell sense the presence of another cell and through what medium? To approach these questions, the formation of aggregates of a 3T3 cell variant (3T3x cells) grown on solid substrates was studied. Each of the aggregates consisted of cells that, at the time of their seeding, were single and...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0407763102

    authors: Albrecht-Buehler G

    更新日期:2005-04-05 00:00:00