Emticicia sediminis sp. nov. isolated from sediment of a shallow stream.

Abstract:

:A novel bacterial strain, designated JBR12T, was isolated from sediment of a shallow stream in Cheonan, Korea. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain JBR12T belongs to the genus Emticicia, and indicated that its closest relatives are Emticicia oligotrophica DSM 17448T (97.8 % sequence similarity) and E. ginsengisoli Gsoil 085T (94.3%). A DNA-DNA hybridization experiment revealed < 70 % genomic relatedness between strain JBR12T and E. oligotrophica DSM 17448T. The major fatty acids (>5% of the total) were iso-C15 : 0, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), iso-C15 : 0 3-OH, anteiso-C15 : 0 and iso-C15 : 0 3-OH. The DNA G+C content of strain JBR12T was 37.7 mol%. According to data from the present polyphasic taxonomic study, strain JBR12T represents a novel species of the genus Emticicia, for which the name Emticicia sediminis sp. nov. is proposed. The type strain is JBR12T ( = KACC 17466T = JCM 19321T).

authors

Park SE,Lee S,Kim H,Ahn TY

doi

10.1099/ijs.0.000292

subject

Has Abstract

pub_date

2015-08-01 00:00:00

pages

2496-2499

issue

8

eissn

1466-5026

issn

1466-5034

journal_volume

65

pub_type

杂志文章
  • Shewanella japonica sp. nov.

    abstract::Two strains of agar-digesting bacteria, KMM 3299T and KMM 3300, respectively isolated from sea water and the mussel Protothaca jedoensis, have been characterized. Based on sequencing of the 16S rRNA gene, KMM 3299T showed the highest similarity (93-95%) to members of the genus Shewanella. The G+C contents of the DNAs ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-51-3-1027

    authors: Ivanova EP,Sawabe T,Gorshkova NM,Svetashev VI,Mikhailov VV,Nicolau DV,Christen R

    更新日期:2001-05-01 00:00:00

  • Pseudomonas yamanorum sp. nov., a psychrotolerant bacterium isolated from a subantarctic environment.

    abstract::A psychrotolerant strain, 8H1(T), was isolated from soil samples collected in Isla de los Estados, Ushuaia, Argentina. Cells were Gram-negative, aerobic, straight rods, occurring singly or in pairs, non-spore-forming and motile by means of two polar flagella. The isolate was able to grow in the range 4-35 °C, with opt...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.065201-0

    authors: Arnau VG,Sánchez LA,Delgado OD

    更新日期:2015-02-01 00:00:00

  • Methylothermus subterraneus sp. nov., a moderately thermophilic methanotroph isolated from a terrestrial subsurface hot aquifer.

    abstract::A novel methane-oxidizing bacterium, strain HTM55(T), was isolated from subsurface hot aquifer water from a Japanese gold mine. Strain HTM55(T) was a Gram-negative, aerobic, motile, coccoid bacterium with a single polar flagellum and the distinctive intracytoplasmic membrane arrangement of a type I methanotroph. Strai...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.028092-0

    authors: Hirayama H,Suzuki Y,Abe M,Miyazaki M,Makita H,Inagaki F,Uematsu K,Takai K

    更新日期:2011-11-01 00:00:00

  • Fluviicola taffensis gen. nov., sp. nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum 'Bacteroidetes'.

    abstract::A novel, strictly aerobic, Gram-negative, yellow-orange-pigmented, motile, catalase-positive, oxidase-negative bacterium, RW262(T), was isolated from water of the River Taff, Cardiff, UK, during January 2000. Phylogenetic analysis of the 16S rRNA gene indicated that strain RW262(T) was a member of the family Cryomorph...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63736-0

    authors: O'Sullivan LA,Rinna J,Humphreys G,Weightman AJ,Fry JC

    更新日期:2005-09-01 00:00:00

  • Rhabdobacter roseus gen. nov., sp. nov., isolated from soil.

    abstract::An aerobic, Gram-stain-negative, oxidase- and catalase-positive, non-motile, non-spore-forming, rod-shaped, pink-pigmented bacterium, designated strain R49T, was isolated from soil. Flexirubin-type pigments were absent. Phylogenetic analysis based on its 16S rRNA gene sequence revealed that strain R49T formed a lineag...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000714

    authors: Dahal RH,Kim J

    更新日期:2016-01-01 00:00:00

  • Genetic diversity and symbiotic effectiveness of Bradyrhizobium strains nodulating selected annual grain legumes growing in Ethiopia.

    abstract::Vigna unguiculata, Vigna radiata and Arachis hypogaea growing in Ethiopia are nodulated by a genetically diverse group of Bradyrhizobium strains. To determine the genetic identity and symbiotic effectiveness of these bacteria, a collection of 36 test strains originating from the root nodules of the three hosts was inv...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002486

    authors: Degefu T,Wolde-Meskel E,Rasche F

    更新日期:2018-01-01 00:00:00

  • Massilia lurida sp. nov., isolated from soil.

    abstract::A bacterial isolate, designated strain D5(T), was isolated from a soil sample collected from the Inner Mongolia Autonomous Region, China, and subjected to a taxonomic investigation using a polyphasic approach. Strain D5(T) was aerobic, Gram-stain-negative, rod-shaped and motile. Strain D5(T) fell within the evolutiona...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.047068-0

    authors: Luo X,Xie Q,Wang J,Pang H,Fan J,Zhang J

    更新日期:2013-06-01 00:00:00

  • Moniliella byzovii sp. nov., a chlamydospore-forming black yeast isolated from flowers.

    abstract::Yeasts of the genus Moniliella were isolated from 651 flower samples collected in Vietnam, using an enrichment medium containing 50 % glucose. Species of the genus Moniliella were found in 5 % of the samples and 54 strains were isolated. The strains were identified based on D1/D2 LSU rRNA gene sequences as M. megachil...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.049767-0

    authors: Thanh VN,Hien DD,Thom TT

    更新日期:2013-03-01 00:00:00

  • Paenibacillus konkukensis sp. nov., isolated from animal feed.

    abstract::A Gram-stain-positive, oxidase- and catalase-positive, aerobic, rod-shaped bacterium, designated strain SK-3146T, was isolated from animal feed. Phylogenetic analysis, based on 16S rRNA gene sequence comparisons, revealed that the strain formed a distinct lineage within the genus Paenibacillus that was closely related...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001955

    authors: Im WT,Yi KJ,Lee SS,Moon HI,Jeon CO,Kim DW,Kim SK

    更新日期:2017-07-01 00:00:00

  • Detection and characterization of Pasteuria 16S rRNA gene sequences from nematodes and soils.

    abstract::Various bacterial species in the genus Pasteuria have great potential as biocontrol agents against plant-parasitic nematodes, although study of this important genus is hampered by the current inability to cultivate Pasteuria species outside their host. To aid in the study of this genus, an extensive 16S rRNA gene sequ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02303-0

    authors: Duan YP,Castro HF,Hewlett TE,White JH,Ogram AV

    更新日期:2003-01-01 00:00:00

  • Arcanobacterium phocisimile sp. nov., isolated from harbour seals.

    abstract::A polyphasic taxonomic study was performed on two previously unidentified Arcanobacterium-like Gram-positive strains isolated from harbour seals. Comparative 16S rRNA gene sequencing showed that both bacteria belonged to the genus Arcanobacterium and were most closely related to Arcanobacterium haemolyticum CIP 103370...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.045591-0

    authors: Hijazin M,Sammra O,Ülbegi-Mohyla H,Nagib S,Alber J,Lämmler C,Kämpfer P,Glaeser SP,Busse HJ,Kassmannhuber J,Prenger-Berninghoff E,Weiss R,Siebert U,Hassan AA,Abdulmawjood A,Zschöck M

    更新日期:2013-06-01 00:00:00

  • Ruminococcus champanellensis sp. nov., a cellulose-degrading bacterium from human gut microbiota.

    abstract::A strictly anaerobic, cellulolytic strain, designated 18P13(T), was isolated from a human faecal sample. Cells were Gram-positive non-motile cocci. Strain 18P13(T) was able to degrade microcrystalline cellulose but the utilization of soluble sugars was restricted to cellobiose. Acetate and succinate were the major end...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.027375-0

    authors: Chassard C,Delmas E,Robert C,Lawson PA,Bernalier-Donadille A

    更新日期:2012-01-01 00:00:00

  • Sphingomonas populi sp. nov., isolated from bark of Populus × euramericana.

    abstract::One Gram-stain-negative, aerobic, motile bacterial strain, 3-7T, was isolated from symptomatic canker bark tissue of Populus × euramericana. 16S rRNA gene sequence data revealed that the novel isolate shared highest similarity with Sphingomonas panacis DCY99T (98.8 %), and <96.5 % sequence similarity with all other sp...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003841

    authors: Li Y,Bian DR,Chang JP,Guo LM,Yang XQ

    更新日期:2020-02-01 00:00:00

  • Phylogenetic relationships of necrogenic Erwinia and Brenneria species as revealed by glyceraldehyde-3-phosphate dehydrogenase gene sequences.

    abstract::Recent examination of the relationships of the dry necrosis-inducing (necrogenic) erwinias using 16S rDNA sequences demonstrated that these bacteria comprise a polyphyletic group and, therefore, have been subdivided into three distinct genera, Erwinia, Brenneria and Pectobacterium, with the classical 'amylovora' group...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-6-2057

    authors: Brown EW,Davis RM,Gouk C,van der Zwet T

    更新日期:2000-11-01 00:00:00

  • Streptomyces cheonanensis sp. nov., a novel streptomycete with antifungal activity.

    abstract::Actinomycete strain VC-A46T, which exhibits antifungal activity, was isolated from a soil sample collected from Cheonan, Korea. The strain was determined to belong to the genus Streptomyces, based on its morphological and chemotaxonomic characteristics. The cell wall of this strain contained ll-diaminopimelic acid. Th...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63816-0

    authors: Kim HJ,Lee SC,Hwang BK

    更新日期:2006-02-01 00:00:00

  • Polyhydroxyalkanoate-accumulating bacterium isolated from soil of a sugar-cane plantation in Brazil.

    abstract::Strain IPT101T, isolated from the soil of a sugar-cane plantation in Brazil, was analysed in a polyphasic taxonomic study. The strain produces polyhydroxyalkanoates from sucrose and other carbon sources. Morphological, physiological and biochemical data as well as 16S rDNA, whole-cell protein and fatty acid analyses i...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-51-5-1709

    authors: Brämer CO,Vandamme P,da Silva LF,Gomez JG,Steinbüchel A

    更新日期:2001-09-01 00:00:00

  • Brevibacterium daeguense sp. nov., a nitrate-reducing bacterium isolated from a 4-chlorophenol enrichment culture.

    abstract::A Gram-reaction-positive, non-spore-forming, aerobic actinobacterial strain (2C6-41(T)) was isolated from the activated sludge from an industrial wastewater treatment plant in Daegu, South Korea. Its taxonomic position was investigated by using a polyphasic approach. On the basis of 16S rRNA gene sequence similarity, ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.038141-0

    authors: Cui Y,Kang MS,Woo SG,Jin L,Kim KK,Park J,Lee M,Lee ST

    更新日期:2013-01-01 00:00:00

  • Skermanella aerolata sp. nov., isolated from air, and emended description of the genus Skermanella.

    abstract::A light-pink-coloured bacterium, designated strain 5416T-32(T), was isolated from an air sample in Korea. Cells of the strain were strictly aerobic, Gram-negative, motile (single polar or subpolar flagellum) and rod-shaped. Optimal growth occurred at 25-30 degrees C and at pH 6.0-7.0. The major quinones were Q-10 and ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64676-0

    authors: Weon HY,Kim BY,Hong SB,Joa JH,Nam SS,Lee KH,Kwon SW

    更新日期:2007-07-01 00:00:00

  • Pseudomonas populi sp. nov., an endophytic bacterium isolated from Populus euphratica.

    abstract::A Gram-stain negative, aerobic, non-motile, short-rod-shaped bacterium, designated KBL-4-9T, was isolated from the storage liquid in the stems of Populus euphratica trees in Xinjiang, PR China. Strain KBL-4-9T grew at 4-45 °C (optimum 37 °C), 1-3 % (w/v) NaCl (optimum 1 %, w/v) and pH 5.5-9.5 (optimum pH 7.5). Phyloge...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000896

    authors: Anwar N,Abaydulla G,Zayadan B,Abdurahman M,Hamood B,Erkin R,Ismayil N,Rozahon M,Mamtimin H,Rahman E

    更新日期:2016-03-01 00:00:00

  • Fictibacillus aquaticus sp. nov., isolated from downstream river water.

    abstract::A Gram-stain-positive, facultatively anaerobic bacterial strain, GDSW-R2A3T, was isolated from a downstream water sample collected from the river Ganges, India. Analysis of the 16S rRNA gene sequence of strain GDSW-R2A3T revealed its affiliation to the family Bacillaceae. Further analysis using a polyphasic approach r...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002474

    authors: Pal D,Bhardwaj A,Kaur N,Sudan SK,Bisht B,Kumari M,Vyas B,Krishnamurthi S,Mayilraj S

    更新日期:2018-01-01 00:00:00

  • Chryseobacterium gregarium sp. nov., isolated from decaying plant material.

    abstract::In this study, strain P 461/12T, isolated from decaying plant material after mulching a pasture, was shown to represent a novel species of the genus Chryseobacterium by means of a polyphasic approach. The closest phylogenetic neighbours to the novel strain, as determined by 16S rRNA gene sequence analysis, were Chryse...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65544-0

    authors: Behrendt U,Ulrich A,Schumann P

    更新日期:2008-05-01 00:00:00

  • Alistipes inops sp. nov. and Coprobacter secundus sp. nov., isolated from human faeces.

    abstract::Culture-based study of the faecal microbiome in two adult female subjects revealed the presence of two obligately anaerobic, non-spore-forming, rod-shaped, non-motile, Gram-negative bacterial strains that represent novel species. The first strain, designated 627T, was a fastidious, slow-growing, indole-positive bacter...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000617

    authors: Shkoporov AN,Chaplin AV,Khokhlova EV,Shcherbakova VA,Motuzova OV,Bozhenko VK,Kafarskaia LI,Efimov BA

    更新日期:2015-12-01 00:00:00

  • Construction of an interactive online phytoplasma classification tool, iPhyClassifier, and its application in analysis of the peach X-disease phytoplasma group (16SrIII).

    abstract::Phytoplasmas, the causal agents of numerous plant diseases, are insect-vector-transmitted, cell-wall-less bacteria descended from ancestral low-G+C-content Gram-positive bacteria in the Bacillus-Clostridium group. Despite their monophyletic origin, widely divergent phytoplasma lineages have evolved in adaptation to sp...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.010249-0

    authors: Zhao Y,Wei W,Lee IM,Shao J,Suo X,Davis RE

    更新日期:2009-10-01 00:00:00

  • Cupriavidus pinatubonensis sp. nov. and Cupriavidus laharis sp. nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines.

    abstract::Taxonomic studies were performed on ten hydrogen-oxidizing, facultatively chemolithotrophic bacteria that were isolated from volcanic mudflow deposits derived from the eruption of Mt. Pinatubo in the Philippines in 1991. Phylogenetic analysis based on 16S rRNA gene sequences indicated that these isolates belonged to t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63922-0

    authors: Sato Y,Nishihara H,Yoshida M,Watanabe M,Rondal JD,Concepcion RN,Ohta H

    更新日期:2006-05-01 00:00:00

  • Terrabacter aerolatus sp. nov., isolated from an air sample.

    abstract::A Gram-positive, strictly aerobic, motile, rod- or coccoid-shaped bacterium, strain 5516J-36(T), was isolated from an air sample from Jeju region, Korea, and its taxonomic position was investigated by a polyphasic approach. The organism grew optimally at 30 degrees C and pH 7.0-8.0. Comparative 16S rRNA gene sequencin...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65040-0

    authors: Weon HY,Schumann P,Kroppenstedt RM,Kim BY,Song J,Kwon SW,Go SJ,Stackebrandt E

    更新日期:2007-09-01 00:00:00

  • Pseudomonas granadensis sp. nov., a new bacterial species isolated from the Tejeda, Almijara and Alhama Natural Park, Granada, Spain.

    abstract::During the course of screening bacterial isolates as sources of as-yet unknown bioactive compounds with pharmaceutical applications, a chemo-organotrophic, Gram-negative bacterium was isolated from a soil sample taken from the Tejeda, Almijara and Alhama Natural Park, Granada, Spain. Strain F-278,770(T) was oxidase- a...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.069260-0

    authors: Pascual J,García-López M,Bills GF,Genilloud O

    更新日期:2015-02-01 00:00:00

  • Persicobacter psychrovividus sp. nov., isolated from shellfish, and emended descriptions of the genus Persicobacter and Persicobacter diffluens.

    abstract::The taxonomic position of three bacterial strains, Asr22-19T, NBRC 101035 and NBRC 101041, isolated from shellfish in Japan, was determined by using a polyphasic taxonomic approach. The strains were facultatively anaerobic, motile by gliding and Gram-staining-negative slender rods. Their major respiratory quinone was ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.016113-0

    authors: Muramatsu Y,Takahashi M,Kaneyasu M,Iino T,Suzuki KI,Nakagawa Y

    更新日期:2010-08-01 00:00:00

  • Paenibacillus chartarius sp. nov., isolated from a paper mill.

    abstract::The taxonomy of strain CCUG 55240(T), a Gram-staining-positive, aerobic, endospore-forming bacterium that was isolated from a paper mill, was investigated using a polyphasic approach. In phylogenetic analysis based on 16S rRNA gene sequences, the novel strain was grouped with established members of the genus Paenibaci...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.035154-0

    authors: Kämpfer P,Falsen E,Lodders N,Martin K,Kassmannhuber J,Busse HJ

    更新日期:2012-06-01 00:00:00

  • Erythrobacter lutimaris sp. nov., isolated from a tidal flat sediment.

    abstract::A Gram-stain-negative, non-motile, coccoid- or oval-shaped bacterial strain, designated S-5(T), belonging to the class Alphaproteobacteria, was isolated from a tidal flat sediment of the Yellow Sea, Korea and was subjected to a polyphasic taxonomic study. Strain S-5(T) grew optimally at pH 7.0-8.0, at 30 °C and in the...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.067728-0

    authors: Jung YT,Park S,Lee JS,Yoon JH

    更新日期:2014-12-01 00:00:00

  • Desulfoprunum benzoelyticum gen. nov., sp. nov., a Gram-stain-negative, benzoate-degrading, sulfate-reducing bacterium isolated from a wastewater treatment plant.

    abstract::A strictly anaerobic, mesophilic, sulfate-reducing bacterium, strain KoBa311(T), isolated from the wastewater treatment plant at Konstanz, Germany, was characterized phenotypically and phylogenetically. Cells were Gram-stain-negative, non-motile, oval to short rods, 3-5 µm long and 0.8-1.0 µm wide with rounded ends, d...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.066761-0

    authors: Junghare M,Schink B

    更新日期:2015-01-01 00:00:00