Arcanobacterium phocisimile sp. nov., isolated from harbour seals.

Abstract:

:A polyphasic taxonomic study was performed on two previously unidentified Arcanobacterium-like Gram-positive strains isolated from harbour seals. Comparative 16S rRNA gene sequencing showed that both bacteria belonged to the genus Arcanobacterium and were most closely related to Arcanobacterium haemolyticum CIP 103370(T) (98.4% 16S rRNA gene sequence similarity), A. canis P6775(T) (97.4%), A. phocae DSM 10002(T) (97.4%), A. pluranimalium M430/94/2(T) (95.7%) and A. hippocoleae CCUG 44697(T) (95.5%). The presence of the major menaquinone MK-9(H4) supported the affiliation of the isolates with the genus Arcanobacterium. The polar lipid profile consisted of major amounts of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, an unidentified phospholipid and two unidentified glycolipids. The major fatty acids were C16:0, C18:0, C18:1ω9c and summed feature 5 (comprising C18:2ω6,9c and/or anteiso-C18:0). Physiological and biochemical tests clearly distinguished the isolates from other members of the genus Arcanobacterium. Based on the common origin and various physiological properties comparable to those of A. phocae, it is proposed that the isolates are classified as members of a novel species with the name Arcanobacterium phocisimile sp. nov. The type strain is 2698(T) (=LMG 27073(T) =CCM 8430(T)).

authors

Hijazin M,Sammra O,Ülbegi-Mohyla H,Nagib S,Alber J,Lämmler C,Kämpfer P,Glaeser SP,Busse HJ,Kassmannhuber J,Prenger-Berninghoff E,Weiss R,Siebert U,Hassan AA,Abdulmawjood A,Zschöck M

doi

10.1099/ijs.0.045591-0

subject

Has Abstract

pub_date

2013-06-01 00:00:00

pages

2019-2024

issue

Pt 6

eissn

1466-5026

issn

1466-5034

journal_volume

63

pub_type

杂志文章
  • Proposal of Rhodoplanes tepidamans sp. nov. to accommodate the thermotolerant phototrophic bacterium previously referred to as 'Rhodoplanes (Rhodopseudomonas) cryptolactis'.

    abstract::Previously we proposed the reclassification of a thermotolerant phototrophic bacterium, 'Rhodopseudomonas cryptolactis' Stadtwald-Demchick et al. 1990, as 'Rhodoplanes cryptolactis' nom. rev., comb. nov. with strain DSM 9987T (ATCC 49414T) as the type strain. However, while both the names 'Rhodopseudomonas cryptolacti...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001752

    authors: Hiraishi A,Okamura K

    更新日期:2017-05-01 00:00:00

  • Flavivirga eckloniae sp. nov. and Flavivirga aquimarina sp. nov., isolated from seaweed Ecklonia cava.

    abstract::Two Gram-stain-negative, non-spore-forming, rod-shaped, aerobic and yellow-coloured bacterial strains, designated strains ECD14T and EC2D5T, were isolated from a seaweed Eckloniacava. The isolates required sea salts for growth. Flexirubin-type and carotenoid pigment was produced. The 16S rRNA gene sequence similarity ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002094

    authors: Lee JH,Kang JW,Choe HN,Seong CN

    更新日期:2017-08-01 00:00:00

  • Marinitenerispora sediminis gen. nov., sp. nov., a member of the family Nocardiopsaceae isolated from marine sediment.

    abstract::Three novel actinobacterial strains, designated as TPS16T, TPS81 and TPS83, were isolated from a sample of marine sediment collected from Tioman Island, Malaysia. The strains formed abundant branched substrate mycelia without fragmentation along with production of blue spores and blue diffusible pigment on soybean mea...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003587

    authors: Ng ZY,Fang BZ,Li WJ,Tan GYA

    更新日期:2019-10-01 00:00:00

  • Characterization of Vibrio viscosus and Vibrio wodanis isolated at different geographical locations: a proposal for reclassification of Vibrio viscosus as Moritella viscosa comb. nov.

    abstract::Vibrio viscosus and Vibrio wodanis are recently described species of psychrotropic bacteria that have been found associated with a disease called 'winter ulcer', affecting salmonid fish reared in saline water in Norway, Iceland and recently in Scotland. V. viscosus and V. wodanis strains initially isolated from fish i...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-2-479

    authors: Benediktsdóttir E,Verdonck L,Spröer C,Helgason S,Swings J

    更新日期:2000-03-01 00:00:00

  • Genome analysis-based reclassification of Enterobacter tabaci Duan et al. 2016 as a later heterotypic synonym of Enterobacter mori Zhu et al. 2011.

    abstract::We performed a comparative genomic analysis to clarify the taxonomic relationship between the two Enterobacter species, Enterobacter tabaci and Enterobacter mori. Whole genome sequences of types strains of the two species became available recently. Average nucleotide identity (ANI) and in silico DNA-DNA hybridization ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003871

    authors: Wu W,Zong Z

    更新日期:2020-02-01 00:00:00

  • Alistipes inops sp. nov. and Coprobacter secundus sp. nov., isolated from human faeces.

    abstract::Culture-based study of the faecal microbiome in two adult female subjects revealed the presence of two obligately anaerobic, non-spore-forming, rod-shaped, non-motile, Gram-negative bacterial strains that represent novel species. The first strain, designated 627T, was a fastidious, slow-growing, indole-positive bacter...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000617

    authors: Shkoporov AN,Chaplin AV,Khokhlova EV,Shcherbakova VA,Motuzova OV,Bozhenko VK,Kafarskaia LI,Efimov BA

    更新日期:2015-12-01 00:00:00

  • Saccharolobus caldissimus gen. nov., sp. nov., a facultatively anaerobic iron-reducing hyperthermophilic archaeon isolated from an acidic terrestrial hot spring, and reclassification of Sulfolobus solfataricus as Saccharolobus solfataricus comb. nov. and

    abstract::A novel hyperthermophilic archaeon of strain HS-3T, belonging to the family Sulfolobaceae, was isolated from an acidic terrestrial hot spring in Hakone Ohwaku-dani, Japan. Based on 16S rRNA gene sequence analysis, the closest phylogenetic relatives of strain HS-3T were, first, Sulfolobus solfataricus (96.4 %) and, sec...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002665

    authors: Sakai HD,Kurosawa N

    更新日期:2018-04-01 00:00:00

  • Bacteroides xylanisolvens sp. nov., a xylan-degrading bacterium isolated from human faeces.

    abstract::During the course of a study on the xylan-degrading community from the human gut, six xylanolytic, Gram-negative, anaerobic rods were isolated from faecal samples. 16S rRNA gene sequence analysis showed that the isolates were closely related to each other (> or =99 % sequence similarity) and that they belonged to the ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65504-0

    authors: Chassard C,Delmas E,Lawson PA,Bernalier-Donadille A

    更新日期:2008-04-01 00:00:00

  • Cribrihabitans neustonicus sp. nov., isolated from coastal surface seawater, and emended description of the genus Cribrihabitans Chen et al. 2014.

    abstract::A Gram-stain-negative, strictly aerobic, rod- or oval-shaped, motile, non-spore-forming bacterium, designated strain CC-AMHB-3(T), was isolated from coastal surface seawater off Hualien, Taiwan. The novel strain showed high pairwise 16S rRNA gene sequence similarities to Ruegeria mobilis NBRC 101030(T) (96.5%), Rueger...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.066142-0

    authors: Hameed A,Shahina M,Lin SY,Lai WA,Liu YC,Hsu YH,Young CC

    更新日期:2014-11-01 00:00:00

  • Catenovulum sediminis sp. nov., isolated from coastal sediment.

    abstract::A novel Gram-stain-negative, strictly aerobic, rod-shaped and agar-hydrolysing bacterium, designated D2T, was isolated from a marine sediment sample collected from the coast of Weihai, China (37° 31' 59″ N 122° 03' 47″ E). The cells were motile by a lateral flagellum. Growth was observed at 10-42 °C, at pH 6.0-9.0 and...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002219

    authors: Shi MJ,Du WJ,Wang C,Chen GJ,Du ZJ

    更新日期:2017-10-01 00:00:00

  • Gryllotalpicola protaetiae sp. nov., isolated from insect Protaetia brevitarsis seulensis, and emended descriptions of the genus Gryllotalpicola and the species Gryllotalpicola soli.

    abstract::A bacterial strain, designated 2DFW10M-5T, was isolated from gut of the larva of Protaetia brevitarsis seulensis collected in the Republic of Korea. Cells of the strain were Gram-stain-positive, non-motile and rod-shaped. The strain grew at the range of 10-37 °C (optimum, 28-30 °C) and pH 4.0-8.0 (optimum, pH 7.0) and...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003767

    authors: Cho H,Heo J,Hamada M,Tamura T,Saitou S,Kim JS,Hong SB,Kim SJ,Kwon SW

    更新日期:2020-02-01 00:00:00

  • Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoides x nigra DN34).

    abstract::A pink-pigmented, aerobic, facultatively methylotrophic bacterium, strain BJ001T, was isolated from internal poplar tissues (Populus deltoidesxnigra DN34) and identified as a member of the genus Methylobacterium. Phylogenetic analyses showed that strain BJ001T is related to Methylobacterium thiocyanatum, Methylobacter...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02796-0

    authors: Van Aken B,Peres CM,Doty SL,Yoon JM,Schnoor JL

    更新日期:2004-07-01 00:00:00

  • Gemmobacter tilapiae sp. nov., a poly-β-hydroxybutyrate-accumulating bacterium isolated from a freshwater pond.

    abstract::A novel bacterium, designated strain Ruye-53(T), was isolated from a freshwater pond used to rear tilapiine cichlid fish in Taiwan. The taxonomic position of the novel strain was determined using a polyphasic approach. Strain Ruye-53(T) was Gram-reaction-negative, aerobic, cream-white coloured, rod-shaped, non-motile ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.044735-0

    authors: Sheu SY,Sheu DS,Sheu FS,Chen WM

    更新日期:2013-04-01 00:00:00

  • Multilocus sequence analysis of the family Halomonadaceae.

    abstract::Multilocus sequence analysis (MLSA) protocols have been developed for species circumscription for many taxa. However, at present, no studies based on MLSA have been performed within any moderately halophilic bacterial group. To test the usefulness of MLSA with these kinds of micro-organisms, the family Halomonadaceae,...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.032938-0

    authors: de la Haba RR,Márquez MC,Papke RT,Ventosa A

    更新日期:2012-03-01 00:00:00

  • Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species.

    abstract::Bacteria identified and classified as Pseudomonas stutzeri, on the basis of traditional criteria, are recognized to be markedly heterogeneous, such that a systematic phenotypic characterization has not been correlated with genotypic groupings (i.e. genomovars) based upon DNA-DNA similarities. The internally transcribe...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-4-1629

    authors: Guasp C,Moore ER,Lalucat J,Bennasar A

    更新日期:2000-07-01 00:00:00

  • Dyadobacter beijingensis sp. nov., isolated from the rhizosphere of turf grasses in China.

    abstract::Strain A54(T) was isolated from rhizospheric soil of turf grasses irrigated with reclaimed water in Taoranting Park, Beijing, China. Phenotypic, chemotaxonomic and polygenetic analyses established the affiliation of the isolate to the genus Dyadobacter. Strain A54(T) possessed 97.7, 94.4 and 94.7 % 16S rRNA gene seque...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64754-0

    authors: Dong Z,Guo X,Zhang X,Qiu F,Sun L,Gong H,Zhang F

    更新日期:2007-04-01 00:00:00

  • Methanoculleus horonobensis sp. nov., a methanogenic archaeon isolated from a deep diatomaceous shale formation.

    abstract::A methanogenic organism from the domain Archaea, designated strain T10(T), was isolated from groundwater sampled from a deep diatomaceous shale formation located in Horonobe, Hokkaido, Japan. The strain utilized H2/CO2 and formate as substrates for methanogenesis. Cells were strictly anaerobic, Gram-negative-staining,...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.053520-0

    authors: Shimizu S,Ueno A,Tamamura S,Naganuma T,Kaneko K

    更新日期:2013-11-01 00:00:00

  • Brachybacterium hainanense sp. nov., isolated from noni (Morinda citrifolia L.) branch.

    abstract::A Gram-stain-positive bacterial strain, designated as NR2T, isolated from noni (Morinda citrifolia L.) branch was investigated using a polyphasic taxonomic approach. The cells were small coccoid to ovoid, non-spore-forming and motile. Phylogenetic analysis based on 16S rRNA gene sequences showed that the strain was a ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000559

    authors: Liu Y,Zhai L,Yao S,Cao Y,Cao Y,Zhang X,Su J,Ge Y,Zhao R,Cheng C

    更新日期:2015-11-01 00:00:00

  • Halomonas anticariensis sp. nov., from Fuente de Piedra, a saline-wetland wildfowl reserve in Malaga, southern Spain.

    abstract::Three Halomonas strains, FP34, FP35T and FP36, which were isolated from soil samples taken from Fuente de Piedra, a saline wetland in the province of Málaga in southern Spain, are described. Phylogenetic analyses based on 16S rRNA gene sequences show that the three isolates belong to the genus Halomonas in the gamma-P...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63108-0

    authors: Martínez-Cánovas MJ,Béjar V,Martínez-Checa F,Quesada E

    更新日期:2004-07-01 00:00:00

  • Notification that new names and new combinations have appeared in volume 60, part 8, of the IJSEM.

    abstract::This listing of names published in a previous issue of the IJSEM is provided as a service to bacteriology to assist in the recognition of new names and new combinations. This procedure was proposed by the Judicial Commission [Minute 11(ii), Int J Syst Bacteriol 41 (1991), p. 185]. The names given herein are listed acc...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.028779-0

    authors:

    更新日期:2010-11-01 00:00:00

  • Halomonas stenophila sp. nov., a halophilic bacterium that produces sulphate exopolysaccharides with biological activity.

    abstract::We have undertaken a polyphasic taxonomic study of two halophilic, Gram-negative bacterial strains, N12(T) and B-100, that produce sulphated exopolysaccharides with biological activity. They were isolated from two different saline soil samples. Both strains grow at NaCl concentrations within the range 3-15 % (w/v) [op...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.026369-0

    authors: Llamas I,Béjar V,Martínez-Checa F,Martínez-Cánovas MJ,Molina I,Quesada E

    更新日期:2011-10-01 00:00:00

  • Croceibacterium gen. nov., with description of Croceibacterium ferulae sp. nov., an endophytic bacterium isolated from Ferula sinkiangensis K. M. Shen and reclassification of Porphyrobacter mercurialis as Croceibacterium mercuriale comb. nov.

    abstract::A novel endophytic bacterium, designated strain SX2RGS8T, was isolated from the surface-sterilized roots of an endangered medicinal plant (Ferula sinkiangensis K. M. Shen) collected from Xinjiang, north-western PR China. The taxonomic position of the candidate was investigated using a polyphasic approach. Strain SX2RG...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003540

    authors: Liu YH,Fang BZ,Dong ZY,Li L,Mohamad OAA,Zhang YG,Egamberdieva D,Xiao M,Li WJ

    更新日期:2019-08-01 00:00:00

  • Corynebacterium godavarianum sp. nov., isolated from the Godavari river, India.

    abstract::A Gram-stain-positive, rod-shaped, non-motile bacterium, strain PRD07T, was isolated from Godavari river, India during the world's largest spiritual and religious mass bathing event 'Kumbh Mela'. Molecular analysis using 16S rRNA gene sequencing and phylogenetic analysis reveals the distinct phylogenetic positioning o...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002491

    authors: Jani K,Khare K,Senik S,Karodi P,Vemuluri VR,Bandal J,Shouche Y,Rale V,Sharma A

    更新日期:2018-01-01 00:00:00

  • Algoriphagus trabzonensis sp. nov., isolated from freshwater, and emended description of Algoriphagus alkaliphilus.

    abstract::A Gram-staining-negative, non-motile, catalase- and oxidase-positive strain, designated MS7(T), was isolated from freshwater of a river near Trabzon, Turkey. Its taxonomy was investigated using a polyphasic approach. The strain grew optimally at 28 °C and pH 7.5 and in the presence of 2.0% NaCl. 16S rRNA gene sequence...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000246

    authors: Inan K,Kacagan M,Ozer A,Osman Belduz A,Canakci S

    更新日期:2015-07-01 00:00:00

  • Nocardioides aestuarii sp. nov., isolated from tidal flat sediment.

    abstract::A strictly aerobic, non-motile, rod-shaped actinomycete, designated strain JC2056(T), was isolated from a sediment sample of getbol, the tidal flat of Korea. Results of 16S rRNA gene sequence analysis indicated that the isolate belonged to the genus Nocardioides, with the highest similarity being to Nocardioides luteu...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63192-0

    authors: Yi H,Chun J

    更新日期:2004-11-01 00:00:00

  • Proposal of Yaniaceae fam. nov. and Yania flava sp. nov. and emended description of the genus Yania.

    abstract::A coccoid actinobacterium strain (designated YIM 70178(T)) was isolated from a soil sample collected in Qinghai Province, China. The isolate grew well with an optimum salt concentration of 10-15% (KCl, w/v) but scarcely or not at all without salt. The cell-wall peptidoglycan type was A4alpha, L-Lys-gly-L-Glu. The majo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63594-0

    authors: Li WJ,Schumann P,Zhang YQ,Xu P,Chen GZ,Xu LH,Stackebrandt E,Jiang CL

    更新日期:2005-09-01 00:00:00

  • Mycoplasma iguanae sp. nov., from a green iguana (Iguana iguana) with vertebral disease.

    abstract::Strain 2327T, first cultured from vertebral abscesses of green iguanas (Iguana iguana) collected in Florida, USA, was readily distinguished from all previously described mollicutes by 16S rRNA gene sequence comparisons. Strain 2327T lacks a cell wall, ferments glucose, does not hydrolyse arginine, aesculin or urea and...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63852-0

    authors: Brown DR,Demcovitz DL,Plourdé DR,Potter SM,Hunt ME,Jones RD,Rotstein DS

    更新日期:2006-04-01 00:00:00

  • Paraflavitalea devenefica sp. nov., isolated from urban soil.

    abstract::A Gram-stain-negative, rod-shaped, mesophilic, milky white-pigmented, aerobic, non-spore-forming and non-flagellated bacterium, designated strain X16T, was isolated from urban soil of Zibo, Shandong, China. According to 16S rRNA gene sequence analysis, the isolate showed highest similarities with Paraflavitalea soli 5...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004587

    authors: Hou X,Liu H,Shang Y,Mao S,Li S,Sang F,Deng H,Wang L,Kong L,Zhang C,Ding Z,Gao Y,Wei S,Chen Z

    更新日期:2021-01-01 00:00:00

  • Mucinivorans hirudinis gen. nov., sp. nov., an anaerobic, mucin-degrading bacterium isolated from the digestive tract of the medicinal leech Hirudo verbana.

    abstract::Three anaerobic bacterial strains were isolated from the digestive tract of the medicinal leech Hirudo verbana, using mucin as the primary carbon and energy source. These strains, designated M3(T), M4 and M6, were Gram-stain-negative, non-spore-forming and non-motile. Cells were elongated bacilli approximately 2.4 µm ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000052

    authors: Nelson MC,Bomar L,Maltz M,Graf J

    更新日期:2015-03-01 00:00:00

  • Limibaculum halophilum gen. nov., sp. nov., a new member of the family Rhodobacteraceae.

    abstract::A Gram-stain-negative, cream-pigmented, aerobic, non-motile, non-spore-forming and short-rod-shaped bacterial strain, designated CAU 1123T, was isolated from mud from reclaimed land. The strain's taxonomic position was investigated by using a polyphasic approach. Strain CAU 1123T grew optimally at 37 °C and at pH 7.5 ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002200

    authors: Shin YH,Kim JH,Suckhoom A,Kantachote D,Kim W

    更新日期:2017-10-01 00:00:00