Atopobium deltae sp. nov., isolated from the blood of a patient with Fournier's gangrene.

Abstract:

:A Gram-stain-positive, obligately anaerobic, short rod, designated strain HHRM1715(T), was isolated from the blood of a patient with Fournier's gangrene, complicated by sepsis. On the basis of 16S rRNA gene sequence analysis, strain HHRM1715(T) was shown to belong to the genus Atopobium and was most closely related to Atopobium minutum (95 % similarity). The results of 16S rRNA-gene-based phylogenetic analysis, cellular fatty acid analysis and differential biochemical tests, showed that strain HHRM1715(T) represented a novel species of the genus Atopobium. We therefore describe Atopobium deltae sp. nov. with HHRM1715(T) ( = LMG 27987(T) = CCUG 65171(T)) as the type strain and propose an emended description of the genus Atopobium with regard to the DNA G+C content.

authors

Cools P,Oyaert M,Vaneechoutte M,De Laere E,Vervaeke S

doi

10.1099/ijs.0.065243-0

subject

Has Abstract

pub_date

2014-09-01 00:00:00

pages

3140-3145

issue

Pt 9

eissn

1466-5026

issn

1466-5034

journal_volume

64

pub_type

杂志文章
  • Rejection of the name Borreliella and all proposed species comb. nov. placed therein.

    abstract::Rejection (nomen rejiciendum) of the name Borreliella and all new combinations therein is being requested on grounds of risk to human health and patient safety (Principle 1, subprinciple 2 and Rule 56a) and violation to aim for stability of names, to avoid useless creation of names (Principle 1, subprinciple 1 and 3) ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004149

    authors: Margos G,Castillo-Ramirez S,Cutler S,Dessau RB,Eikeland R,Estrada-Peña A,Gofton A,Graña-Miraglia L,Hunfeld KP,Krause A,Lienhard R,Lindgren PE,Oskam C,Rudolf I,Schwartz I,Sing A,Stevenson B,Wormser GP,Fingerle V

    更新日期:2020-05-01 00:00:00

  • Aminivibrio pyruvatiphilus gen. nov., sp. nov., an anaerobic, amino-acid-degrading bacterium from soil of a Japanese rice field.

    abstract::A novel anaerobic bacterium that could ferment amino acids and organic acids was isolated from an anaerobic, propionate-oxidizing enrichment culture originating from soil of a rice field in Japan. Cells of the isolate, designated strain 4F6E(T), were Gram-staining-negative, oxidase- and catalase-negative, non-spore-fo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.052225-0

    authors: Honda T,Fujita T,Tonouchi A

    更新日期:2013-10-01 00:00:00

  • Chitinophaga vermicomposti sp. nov., with antifungal activity, isolated from vermicompost.

    abstract::A Gram-negative, rod-shaped bacterial strain, YC6729T, was isolated from the vermicompost (VC) collected at Masan, Korea and its taxonomic position was investigated by a polyphasic taxonomic approach. Strain YC6729T grew optimally at 30 degrees C and at pH 6.5-8.5. Phylogenetic analysis based on 16S rRNA gene sequence...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章,收录出版

    doi:10.1099/ijs.0.013425-0

    authors: Yasir M,Aslam Z,Song GC,Bibi F,Jeon CO,Chung YR

    更新日期:2010-01-01 00:00:00

  • Pseudopedobacter beijingensis gen. nov., sp. nov., isolated from coking wastewater activated sludge, and reclassification of Pedobacter saltans as Pseudopedobacter saltans comb. nov.

    abstract::A taxonomic study was carried out on strain GCS-AE-31(T), which was isolated from a phenol-degrading consortium, enriched from coking wastewater activated sludge of the Beijing Shougang Company Limited during the screening of phenol-degrading bacteria. Cells of strain GCS-AE-31(T) were Gram-stain-negative, short rods,...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.053991-0

    authors: Cao J,Lai Q,Li G,Shao Z

    更新日期:2014-06-01 00:00:00

  • Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994.

    abstract::The taxonomic status of Paenibacillus thermophilus was analyzed using genomic and phenotypic approaches. The results of RNA polymerase beta subunit gene sequence comparisons indicated that two type strains of P. thermophilus (DSM 24746T and JCM 17693T) and Paenibacillus macerans ATCC 8244T shared 100 % sequence simila...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003160

    authors: Kobayashi H,Tanizawa Y,Sakamoto M,Nakamura Y,Ohkuma M,Tohno M

    更新日期:2019-02-01 00:00:00

  • The combination Enterobacter agglomerans is to be cited as Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 and the combination Pantoea agglomerans is to be cited as Pantoea agglomerans (Beijerinck 1888) Gavini et al. 1989. Opinion 90. Judic

    abstract::The Judicial Commission affirms that, according to information presented to it, the combination Enterobacter agglomerans is to be cited as Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 and the combination Pantoea agglomerans is to be cited as Pantoea agglomerans (Beijerinck 1888) Gavini et al. 1989. ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.069161-0

    authors: Tindall BJ

    更新日期:2014-10-01 00:00:00

  • Haloplanus salinarum sp. nov., an extremely halophilic archaeon isolated from a solar saltern.

    abstract::An extremely halophilic archaeal strain SP28T was isolated from the Gomso solar saltern, Republic of Korea. Cells of the new strain SP28T were pleomorphic and Gram stain negative, and produced red-pigmented colonies. These grew in medium with 2.5-4.5 M NaCl (optimum 3.1 M) and 0.05-0.5 M MgCl2 (optimum 0.1 M), at 25-5...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002313

    authors: Hwang HB,Kim YE,Koh HW,Song HS,Roh SW,Kim SJ,Nam SW,Park SJ

    更新日期:2017-11-01 00:00:00

  • Actinomadura rhizosphaerae sp. nov., isolated from rhizosphere soil of the plant Azadirachta indica.

    abstract::A novel actinomycete, strain SDA37T, belonging to the genus Actinomadura, was isolated from rhizosphere soil collected from Udon Thani Province, Thailand. The taxonomic position of the strain was characterized using a polyphasic approach. Meso-diaminopimelic acid, glucose, ribose, galactose and madurose were detected ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002940

    authors: Malisorn K,Kanchanasin P,Phongsopitanun W,Tanasupawat S

    更新日期:2018-09-01 00:00:00

  • Polyphasic characterization of rhizobia that nodulate Phaseolus vulgaris in West Africa (Senegal and Gambia).

    abstract::Fifty-eight new isolates were obtained from root nodules of common bean (Phaseolus vulgaris) cultivated in soils originating from different agroecological areas in Senegal and Gambia (West Africa). A polyphasic approach including both phenotypic and genotypic techniques was used to study the diversity of the 58 Rhizob...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-1-159

    authors: Diouf A,de Lajudie P,Neyra M,Kersters K,Gillis M,Martinez-Romero E,Gueye M

    更新日期:2000-01-01 00:00:00

  • Soonwooa buanensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater.

    abstract::A Gram-negative, non-motile, non-gliding, strictly aerobic, pale yellow colony-forming, rod-shaped bacterial strain, designated HM0024(T), was isolated from coastal seawater of the Yellow Sea and subjected to a polyphasic taxonomy study. Based on 16S rRNA gene sequence similarities, strain HM0024(T) was most closely r...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.017707-0

    authors: Joung Y,Song J,Lee K,Oh HM,Joh K,Cho JC

    更新日期:2010-09-01 00:00:00

  • Anaerophaga thermohalophila gen. nov., sp. nov., a moderately thermohalophilic, strictly anaerobic fermentative bacterium.

    abstract::The strictly anaerobic gram-negative bacterium strain Fru22T grows at 50 degrees C in media containing up to 75 g NaCl l(-1). Hexoses and pentoses are fermented to equal molar amounts of acetate, propionate and succinate, and no CO2 is formed. An orange-red pigment similar to flexirrubin is produced during stationary ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-1-173

    authors: Denger K,Warthmann R,Ludwig W,Schink B

    更新日期:2002-01-01 00:00:00

  • Pedobacter terrae sp. nov., isolated from soil.

    abstract::A Gram-negative, non-motile, rod-shaped bacterial strain, DS-57T, was isolated from soil from Dokdo, Korea, and its taxonomic position was investigated using a polyphasic approach. It grew optimally at 25 degrees C and in trypticase soy broth without NaCl and trypticase soy broth with 0.5% NaCl. Strain DS-57T containe...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64727-0

    authors: Yoon JH,Kang SJ,Oh TK

    更新日期:2007-11-01 00:00:00

  • Bacillus niabensis sp. nov., isolated from cotton-waste composts for mushroom cultivation.

    abstract::A group of five bacilli, designated strains 4T12, 4T19(T), 5M45, 5M53 and 5T52, isolated from cotton-waste composts for mushroom cultivation, were examined. These strains were Gram-positive, aerobic, motile, spore-forming rods. 16S rRNA gene sequence analyses revealed that the isolates belonged to the genus Bacillus, ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64178-0

    authors: Kwon SW,Lee SY,Kim BY,Weon HY,Kim JB,Go SJ,Lee GB

    更新日期:2007-08-01 00:00:00

  • Campylobacter armoricus sp. nov., a novel member of the Campylobacter lari group isolated from surface water and stools from humans with enteric infection.

    abstract::During a study on the prevalence and diversity of members of the genus Campylobacter in a shellfish-harvesting area and its catchment in Brittany, France, six urease-positive isolates of members of the genus Campylobacter were recovered from surface water samples, as well as three isolates from stools of humans displa...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003836

    authors: Boukerb AM,Penny C,Serghine J,Walczak C,Cauchie HM,Miller WG,Losch S,Ragimbeau C,Mossong J,Mégraud F,Lehours P,Bénéjat L,Gourmelon M

    更新日期:2019-12-01 00:00:00

  • Pedobacter mongoliensis sp. nov., isolated from grassland soil.

    abstract::A Gram-stain-negative, rod-shaped, motile by gliding and strictly aerobic bacterial strain, named 1-32T, was isolated from soil of the Ordos grassland in Inner Mongolia, PR China. Strain 1-32T showed highest 16S rRNA gene sequence similarities to Pedobacter luteus N7d-4T (95.4 %), Pedobacter oryzae DSM 19973T (95.3 %)...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002637

    authors: Yuan K,Cao M,Li J,Wang G

    更新日期:2018-04-01 00:00:00

  • Dyadobacter crusticola sp. nov., from biological soil crusts in the Colorado Plateau, USA, and an emended description of the genus Dyadobacter Chelius and Triplett 2000.

    abstract::Bacterial strain CP183-8(T) was isolated from biological soil crusts collected in the Colorado Plateau, USA. Cells of this strain were aerobic, non-motile, Gram-negative, psychrotolerant and formed beaded chains in the stationary growth phase. They contained C(16 : 1)omega5c and C(16 : 1)omega7c as major fatty acids. ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63498-0

    authors: Reddy GSN,Garcia-Pichel F

    更新日期:2005-05-01 00:00:00

  • Marinoscillum gen. nov., a member of the family 'Flexibacteraceae', with Marinoscillum pacificum sp. nov. from a marine sponge and Marinoscillum furvescens nom. rev., comb. nov.

    abstract::A novel strain, designated MRN461(T), was isolated from a marine sponge in Micronesia. The 16S rRNA gene sequence of the isolate showed 95.6 % similarity with that of 'Microscilla furvescens' IFO (now NBRC) 15994. Phylogenetic analysis revealed that the isolate and 'Microscilla furvescens' IFO 15994 formed a distinct ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.004317-0

    authors: Seo HS,Kwon KK,Yang SH,Lee HS,Bae SS,Lee JH,Kim SJ

    更新日期:2009-05-01 00:00:00

  • Aquiflexum balticum gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea.

    abstract::A bacterial isolate from the Baltic Sea, BA160(T), was characterized for its physiological and biochemical features, fatty acid profile, G+C content and phylogenetic position based on 16S rRNA gene sequences. The strain was isolated from the surface water of the central Baltic Sea during the decay of a plankton bloom....

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63255-0

    authors: Brettar I,Christen R,Höfle MG

    更新日期:2004-11-01 00:00:00

  • Flavobacterium ovatum sp. nov., a marine bacterium isolated from an Antarctic intertidal sandy beach.

    abstract::A rod-shaped, Gram-staining-negative, strictly aerobic, non-motile bacterium with no flexirubin-type pigment, designated as W201ET, was isolated from an intertidal sandy beach in Antarctica. The organism formed faintly yellow, round colonies on marine agar 2216E. The strain required sea salts for growth and grew optim...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002586

    authors: Ren Q,Yu M,Li Y,Zhang Y,Shi X,Wu Y,Su Y,Wang Y,Wang X,Zhang XH

    更新日期:2018-03-01 00:00:00

  • Alkaliphilus transvaalensis gen. nov., sp. nov., an extremely alkaliphilic bacterium isolated from a deep South African gold mine.

    abstract::A novel extreme alkaliphile was isolated from a mine water containment dam at 3.2 km below land surface in an ultra-deep gold mine near Carletonville, South Africa. The cells of this bacterium were straight to slightly curved rods, motile by flagella and formed endospores. Growth was observed over the temperature rang...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-51-4-1245

    authors: Takai K,Moser DP,Onstott TC,Spoelstra N,Pfiffner SM,Dohnalkova A,Fredrickson JK

    更新日期:2001-07-01 00:00:00

  • Nocardioides kribbensis sp. nov., isolated from an alkaline soil.

    abstract::Three Gram-positive, rod- or coccoid-shaped bacterial strains, KSL-2(T), KSL-5 and KSL-6, were isolated from an alkaline soil in Korea and subjected to a polyphasic taxonomical analysis. These isolates grew optimally at pH 9.0 and 30 degrees C. They were characterized chemotaxonomically as having cell wall peptidoglyc...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63631-0

    authors: Yoon JH,Kim IG,Lee MH,Oh TK

    更新日期:2005-07-01 00:00:00

  • Lacibacter cauensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from sediment of a eutrophic lake.

    abstract::A novel strain, NJ-8(T), was isolated from sediment of the eutrophic Taihu Lake (China) and was subjected to a taxonomic study by using a polyphasic approach. The novel strain was aerobic and formed orange-pigmented colonies on R2A agar. Cells were Gram-negative single rods that were motile by means of gliding. Phylog...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.003475-0

    authors: Qu JH,Yuan HL,Yang JS,Li HF,Chen N

    更新日期:2009-05-01 00:00:00

  • Sequence analysis of 16S rDNA, gyrB and alkB genes of plant-associated Rhodococcus species from Tunisia.

    abstract::The genus Rhodococcus contains several species with agricultural, biotechnological and ecological importance. Within this genus, many phyllosphere, rhizosphere and endosphere strains are plant growth promoting bacteria, whereas strains designated as R. fascians are plant pathogens. In this study, we isolated 47 Rhodoc...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004521

    authors: Dhaouadi S,Mougou AH,Wu CJ,Gleason ML,Rhouma A

    更新日期:2020-12-01 00:00:00

  • Ochrobactrum pituitosum sp. nov., isolated from an industrial environment.

    abstract::Strain CCUG 50899, a Gram-negative, rod-shaped, non-spore-forming, motile bacterium isolated from industrial environment in Sweden and tentatively assigned to the species Ochrobactrum anthropi, was studied in order to clarify its taxonomic status. 16S rRNA gene sequence similarities placed the strain in the genus Ochr...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.011668-0

    authors: Huber B,Scholz HC,Kämpfer P,Falsen E,Langer S,Busse HJ

    更新日期:2010-02-01 00:00:00

  • Herminiimonas glaciei sp. nov., a novel ultramicrobacterium from 3042 m deep Greenland glacial ice.

    abstract::A Gram-negative ultramicrobacterium (designated strain UMB49(T)) was isolated from a 120,000-year-old, 3,042 m deep Greenland glacier ice core using a 0.2 mum filtration enrichment procedure. Phylogenetic analysis of the 16S rRNA gene sequence indicated that this strain belonged to the genus Herminiimonas of the famil...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.001685-0

    authors: Loveland-Curtze J,Miteva VI,Brenchley JE

    更新日期:2009-06-01 00:00:00

  • Eilatimonas milleporae gen. nov., sp. nov., a marine bacterium isolated from the hydrocoral Millepora dichotoma.

    abstract::A marine bacterial strain, designated MD2(T), was isolated from the damaged tissue of a hydrocoral, Millepora dichotoma, collected from the coral reef in the northern Red Sea, Gulf of Eilat, Israel. Strain MD2(T) was Gram-reaction-negative, rod-shaped and motile, and formed small, creamy and opaque colonies, 1-2 mm in...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.043976-0

    authors: Paramasivam N,Ben-Dov E,Arotsker L,Kushmaro A

    更新日期:2013-05-01 00:00:00

  • Catellibacterium aquatile sp. nov., isolated from fresh water, and emended description of the genus Catellibacterium Tanaka et al. 2004.

    abstract::A Gram-negative, rod-shaped, non-pigmented, non-spore-forming bacterial strain that was motile by a single polar flagellum, designated A1-9(T), was isolated from Daqing reservoir in north-east China and its taxonomic position was studied using a polyphasic approach. Strain A1-9(T) was non-halophilic, strictly aerobic ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.017632-0

    authors: Liu Y,Xu CJ,Jiang JT,Liu YH,Song XF,Li H,Liu ZP

    更新日期:2010-09-01 00:00:00

  • Spirosoma metallilatum sp. nov., isolated from an automotive air conditioning system.

    abstract::A Gram-stain-negative, aerobic, rod-shaped and yellow-pigmented bacterial strain, designated TX0405T, was isolated from an automotive air conditioning system. Colonies were circular, convex, semi-translucent, smooth and yellow. The strain grew at 20-28°C (optimum, 28°C), at pH 6.0-7.5 (optimum, pH 6.5) and in the pres...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002533

    authors: Kim DU,Lee H,Lee S,Park S,Yoon JH,Ka JO

    更新日期:2018-02-01 00:00:00

  • Nocardioides iriomotensis sp. nov., an actinobacterium isolated from forest soil.

    abstract::An actinomycete strain, designated IR27-S3(T), was isolated from a forest soil sample collected from Iriomote Island, Okinawa, Japan. Cells of the isolate were Gram-stain-positive, aerobic, non-sporulating, non-motile coccoids or short rods. The strain grew in the presence of 0-7 % (w/v) NaCl, at pH 6-8 and at 12-37 °...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.025080-0

    authors: Yamamura H,Ohkubo SY,Nakagawa Y,Ishida Y,Hamada M,Otoguro M,Tamura T,Hayakawa M

    更新日期:2011-09-01 00:00:00

  • Bifidobacterium tsurumiense sp. nov., from hamster dental plaque.

    abstract::Three novel micro-organisms, designated strains OMB115(T), OMB118 and OMB120, were isolated from dental plaque from golden hamsters fed with a high-carbohydrate diet. The three strains were Gram-positive, facultatively anaerobic rods that lacked catalase activity. Analysis of their partial 16S rRNA gene sequences indi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65296-0

    authors: Okamoto M,Benno Y,Leung KP,Maeda N

    更新日期:2008-01-01 00:00:00