Copper control of bacterial nitrous oxide emission and its impact on vitamin B12-dependent metabolism.

Abstract:

:Global agricultural emissions of the greenhouse gas nitrous oxide (N2O) have increased by around 20% over the last 100 y, but regulation of these emissions and their impact on bacterial cellular metabolism are poorly understood. Denitrifying bacteria convert nitrate in soils to inert di-nitrogen gas (N2) via N2O and the biochemistry of this process has been studied extensively in Paracoccus denitrificans. Here we demonstrate that expression of the gene encoding the nitrous oxide reductase (NosZ), which converts N2O to N2, is regulated in response to the extracellular copper concentration. We show that elevated levels of N2O released as a consequence of decreased cellular NosZ activity lead to the bacterium switching from vitamin B12-dependent to vitamin B12-independent biosynthetic pathways, through the transcriptional modulation of genes controlled by vitamin B12 riboswitches. This inhibitory effect of N2O can be rescued by addition of exogenous vitamin B12.

authors

Sullivan MJ,Gates AJ,Appia-Ayme C,Rowley G,Richardson DJ

doi

10.1073/pnas.1314529110

subject

Has Abstract

pub_date

2013-12-03 00:00:00

pages

19926-31

issue

49

eissn

0027-8424

issn

1091-6490

pii

1314529110

journal_volume

110

pub_type

杂志文章
  • Immunization of Aotus monkeys with Plasmodium falciparum blood-stage recombinant proteins.

    abstract::The current spread of multidrug-resistant malaria demands rapid vaccine development against the major pathogen Plasmodium falciparum. The high quantities of protein required for a worldwide vaccination campaign select recombinant DNA technology as a practical approach for large-scale antigen production. We describe th...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.10.4017

    authors: Herrera S,Herrera MA,Perlaza BL,Burki Y,Caspers P,Döbeli H,Rotmann D,Certa U

    更新日期:1990-05-01 00:00:00

  • Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations.

    abstract::High-accuracy ab initio folding has remained an elusive objective despite decades of effort. To explore the folding landscape of villin headpiece subdomain HP35, we conducted two sets of replica exchange molecular dynamics for 200 ns each and three sets of conventional microsecond-long molecular dynamics simulations, ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0608432104

    authors: Lei H,Wu C,Liu H,Duan Y

    更新日期:2007-03-20 00:00:00

  • Thermotaxis of Dictyostelium discoideum amoebae and its possible role in pseudoplasmodial thermotaxis.

    abstract::Thermotaxis by individual amoebae of Dictyostelium discoideum on a temperature gradient is described. These amoebae show positive thermotaxis at temperatures between 14 degrees C and 28 degrees C shortly (3 hr) after food depletion. Increasing time on the gradient reduces the positive thermotactic response at the lowe...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.18.5646

    authors: Hong CB,Fontana DR,Poff KL

    更新日期:1983-09-01 00:00:00

  • Seasonal aggression independent of seasonal testosterone in wood rats.

    abstract::Levels of inter-male aggression, both in laboratory encounters and in the field, rise dramatically during the breeding season, closely paralleling the seasonal rise in testosterone. However, post-pubertally castrated males also show the dramatic seasonal rise in aggression in laboratory encounters with castrated oppon...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.81.16.5255

    authors: Caldwell GS,Glickman SE,Smith ER

    更新日期:1984-08-01 00:00:00

  • RNAs in Epstein-Barr virions control early steps of infection.

    abstract::Herpesviruses are dsDNA viruses, but their virions may additionally contain RNAs that can be transduced to recipient cells. The biological functions of herpes virion RNA species are unknown. Here we address this issue for EBV, a widespread human herpesvirus with oncogenic potential. We show that EBV-derived particles ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1115906109

    authors: Jochum S,Ruiss R,Moosmann A,Hammerschmidt W,Zeidler R

    更新日期:2012-05-22 00:00:00

  • Localization of the structural gene for human apolipoprotein A-I on the long arm of human chromosome 11.

    abstract::Apolipoprotein A-I (apo A-I), the major apolipoprotein in human high density lipoproteins, is involved in the disease atherosclerosis. Cloned apo A-I cDNA (pA1-3) was used as a probe in chromosome mapping studies to detect the human apo A-I structural gene sequence in human-Chinese hamster cell hybrids. Southern blot ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.81.2.508

    authors: Cheung P,Kao FT,Law ML,Jones C,Puck TT,Chan L

    更新日期:1984-01-01 00:00:00

  • Heterogeneity for IGF-II production maintained by public goods dynamics in neuroendocrine pancreatic cancer.

    abstract::The extensive intratumor heterogeneity revealed by sequencing cancer genomes is an essential determinant of tumor progression, diagnosis, and treatment. What maintains heterogeneity remains an open question because competition within a tumor leads to a strong selection for the fittest subclone. Cancer cells also coope...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1414653112

    authors: Archetti M,Ferraro DA,Christofori G

    更新日期:2015-02-10 00:00:00

  • Basal NF-κB controls IL-7 responsiveness of quiescent naïve T cells.

    abstract::T cells are essential for immune defenses against pathogens, such that viability of naïve T cells before antigen encounter is critical to preserve a polyclonal repertoire and prevent immunodeficiencies. The viability of naïve T cells before antigen recognition is ensured by IL-7, which drives expression of the prosurv...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1315398111

    authors: Miller ML,Mashayekhi M,Chen L,Zhou P,Liu X,Michelotti M,Tramontini Gunn N,Powers S,Zhu X,Evaristo C,Alegre ML,Molinero LL

    更新日期:2014-05-20 00:00:00

  • Functional and structural characterization of P40, a mouse glycoprotein with T-cell growth factor activity.

    abstract::Antigen-independent cell lines were derived from mouse helper T-cell clones by culture in autologous supernatant obtained after stimulation with concanavalin A. A factor, termed P40, supporting the growth of these lines was purified and characterized as a basic 32- to 39-kDa single-chain glycoprotein functionally dist...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.85.18.6934

    authors: Uyttenhove C,Simpson RJ,Van Snick J

    更新日期:1988-09-01 00:00:00

  • Probing polymerization forces by using actin-propelled lipid vesicles.

    abstract::Actin polymerization provides a powerful propulsion force for numerous types of cell motility. Although tremendous progress has been made in identifying the biochemical components necessary for actin-based motility, the precise biophysical mechanisms of force generation remain unclear. To probe the polymerization forc...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0837027100

    authors: Upadhyaya A,Chabot JR,Andreeva A,Samadani A,van Oudenaarden A

    更新日期:2003-04-15 00:00:00

  • Enhancement of biomixing by swimming algal cells in two-dimensional films.

    abstract::Fluid mixing in active suspensions of microorganisms is important to ecological phenomena and presents a fascinating stochastic process. We investigate the mixing produced by swimming unicellular algal cells (Chlamydomonas) in quasi-two-dimensional liquid films by simultaneously tracking the motion of the cells and th...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1107046108

    authors: Kurtuldu H,Guasto JS,Johnson KA,Gollub JP

    更新日期:2011-06-28 00:00:00

  • One-step generation of cytoplasmic male sterility by fusion of mitochondrial-inactivated tomato protoplasts with nuclear-inactivated Solanum protoplasts.

    abstract::Mesophyll protoplasts of Lycopersicon esculentum were treated with iodoacetamide to inactivate mitochondria, and protoplasts of Solanum acaule and Solanum tuberosum were irradiated with gamma- or x-rays to inactivate nuclei. Mixtures of protoplasts thus modified were treated with Ca2+ and polyethylene glycol to obtain...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.89.15.6832

    authors: Melchers G,Mohri Y,Watanabe K,Wakabayashi S,Harada K

    更新日期:1992-08-01 00:00:00

  • Molecular cloning and nucleotide sequence of a full-length cDNA for human alpha enolase.

    abstract::We previously purified a 48-kDa protein (p48) that specifically reacts with an antiserum directed against the 12 carboxyl-terminal amino acids of the c-myc gene product. Using an antiserum directed against the purified p48, we have cloned a cDNA from a human expression library. This cDNA hybrid-selects an mRNA that tr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.18.6741

    authors: Giallongo A,Feo S,Moore R,Croce CM,Showe LC

    更新日期:1986-09-01 00:00:00

  • Dominant factors controlling glacial and interglacial variations in the treeline elevation in tropical Africa.

    abstract::The knowledge of tropical palaeoclimates is crucial for understanding global climate change, because it is a test bench for general circulation models that are ultimately used to predict future global warming. A longstanding issue concerning the last glacial maximum in the tropics is the discrepancy between the decrea...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0610109104

    authors: Wu H,Guiot J,Brewer S,Guo Z,Peng C

    更新日期:2007-06-05 00:00:00

  • Deficiency of carbohydrate response element-binding protein (ChREBP) reduces lipogenesis as well as glycolysis.

    abstract::The liver provides for long-term energy needs of the body by converting excess carbohydrate into fat for storage. Insulin is one factor that promotes hepatic lipogenesis, but there is increasing evidence that glucose also contributes to the coordinated regulation of carbohydrate and fat metabolism in liver by mechanis...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0401516101

    authors: Iizuka K,Bruick RK,Liang G,Horton JD,Uyeda K

    更新日期:2004-05-11 00:00:00

  • Bacteriophage T4 polynucleotide kinase triggers degradation of mRNAs.

    abstract::The bacteriophage T4-encoded RegB endoribonuclease is produced during the early stage of phage development and targets mostly (but not exclusively) the Shine-Dalgarno sequences of early genes. In this work, we show that the degradation of RegB-cleaved mRNAs depends on a functional T4 polynucleotide kinase/phosphatase ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1119802109

    authors: Durand S,Richard G,Bontems F,Uzan M

    更新日期:2012-05-01 00:00:00

  • Male tolerance and male-male bonds in a multilevel primate society.

    abstract::Male relationships in most species of mammals generally are characterized by intense intrasexual competition, with little bonding among unrelated individuals. In contrast, human societies are characterized by high levels of cooperation and strong bonds among both related and unrelated males. The emergence of cooperati...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1405811111

    authors: Patzelt A,Kopp GH,Ndao I,Kalbitzer U,Zinner D,Fischer J

    更新日期:2014-10-14 00:00:00

  • Mechanism of epidermal growth factor receptor autophosphorylation and high-affinity binding.

    abstract::Epidermal growth factor (EGF) receptor monomers and noncovalently associated dimers were isolated by sucrose density gradient centrifugation, and their respective binding and autophosphorylation activities were determined. We find that monomers are low-affinity receptors and dimers are high-affinity receptors. In the ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.84.22.7832

    authors: Böni-Schnetzler M,Pilch PF

    更新日期:1987-11-01 00:00:00

  • Patterns of coevolving amino acids unveil structural and dynamical domains.

    abstract::Patterns of interacting amino acids are so preserved within protein families that the sole analysis of evolutionary comutations can identify pairs of contacting residues. It is also known that evolution conserves functional dynamics, i.e., the concerted motion or displacement of large protein regions or domains. Is it...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1712021114

    authors: Granata D,Ponzoni L,Micheletti C,Carnevale V

    更新日期:2017-12-12 00:00:00

  • Two yeast genes that encode unusual protein kinases.

    abstract::Mixed synthetic oligonucleotides encoding sequences conserved among tyrosine-specific protein kinases were used to probe the genome of the budding yeast Saccharomyces cerevisiae. Two genes with homology to protein kinases were isolated and characterized by DNA sequence analysis. These genes, designated KIN1 and KIN2, ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.84.17.6035

    authors: Levin DE,Hammond CI,Ralston RO,Bishop JM

    更新日期:1987-09-01 00:00:00

  • Abundant pseudogenes for small nuclear RNAs are dispersed in the human genome.

    abstract::We have cloned and partially characterized 24 loci from the human genome which are complementary to U1, U2, or U3, the three major species of small nuclear RNA (snRNA) in HeLa cells. When compared to the known U1 (human) and U2 (rat) snRNA sequences, the DNA sequences we report here for the complementary regions from ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.78.2.810

    authors: Denison RA,Van Arsdell SW,Bernstein LB,Weiner AM

    更新日期:1981-02-01 00:00:00

  • Random evolutions, markov chains, and systems of partial differential equations.

    abstract::Several authors have considered Markov processes defined by the motion of a particle on a fixed line with a random velocity(1, 6, 8, 10) or a random diffusivity.(5, 12) A "random evolution" is a natural but apparently new generalization of this notion. In this note we hope to show that this concept leads to simple and...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.62.2.305

    authors: Griego RJ,Hersh R

    更新日期:1969-02-01 00:00:00

  • An HP1-like protein is missing from transcriptionally silent micronuclei of Tetrahymena.

    abstract::We report the identification and cloning of a 28-kDa polypeptide (p28) in Tetrahymena macronuclei that shares several features with the well studied heterochromatin-associated protein HP1 from Drosophila. Notably, like HP1, p28 contains both a chromodomain and a chromoshadow domain. p28 also shares features with linke...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.95.23.13624

    authors: Huang H,Wiley EA,Lending CR,Allis CD

    更新日期:1998-11-10 00:00:00

  • Lipoprotein lipase enhances the binding of chylomicrons to low density lipoprotein receptor-related protein.

    abstract::Chylomicron catabolism is known to be initiated by the enzyme lipoprotein lipase (triacylglycero-protein acylhydrolase, EC 3.1.1.34). Chylomicron remnants, produced by lipolysis, are rapidly taken up by the liver via an apolipoprotein E (apoE)-mediated, receptor-dependent process. The low density lipoprotein (LDL) rec...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.88.19.8342

    authors: Beisiegel U,Weber W,Bengtsson-Olivecrona G

    更新日期:1991-10-01 00:00:00

  • Protein structural and surface water rearrangement constitute major events in the earliest aggregation stages of tau.

    abstract::Protein aggregation plays a critical role in the pathogenesis of neurodegenerative diseases, and the mechanism of its progression is poorly understood. Here, we examine the structural and dynamic characteristics of transiently evolving protein aggregates under ambient conditions by directly probing protein surface wat...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1504415113

    authors: Pavlova A,Cheng CY,Kinnebrew M,Lew J,Dahlquist FW,Han S

    更新日期:2016-01-12 00:00:00

  • The plant cell wall matrix harbors a precursor of defense signaling peptides.

    abstract::Proteins of plant cell walls serve as structural macromolecules and play important roles in morphogenesis and development but have not been reported to be the origins of peptide signals that activate genes for plant defense. We report here that the mRNA coding the tomato leaf polyprotein precursor of three hydroxyprol...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0505248102

    authors: Narváez-Vásquez J,Pearce G,Ryan CA

    更新日期:2005-09-06 00:00:00

  • Hyper telomere recombination accelerates replicative senescence and may promote premature aging.

    abstract::Werner syndrome and Bloom syndrome result from defects in the RecQ helicases Werner (WRN) and Bloom (BLM), respectively, and display premature aging phenotypes. Similarly, XFE progeroid syndrome results from defects in the ERCC1-XPF DNA repair endonuclease. To gain insight into the origin of cellular senescence and hu...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1006338107

    authors: Hagelstrom RT,Blagoev KB,Niedernhofer LJ,Goodwin EH,Bailey SM

    更新日期:2010-09-07 00:00:00

  • Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations.

    abstract::DNA polymerases replicate DNA by adding nucleotides to a growing primer strand while avoiding frameshift and point mutations. Here we present a series of up to six successive replication events that were obtained by extension of a primed template directly in a crystal of the thermostable Bacillus DNA polymerase I. The...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0630532100

    authors: Johnson SJ,Taylor JS,Beese LS

    更新日期:2003-04-01 00:00:00

  • Alternative splicing of human papillomavirus type-16 E6/E6* early mRNA is coupled to EGF signaling via Erk1/2 activation.

    abstract::Certain types of human papillomaviruses (HPVs) are etiologically linked to cervical cancer. Their transforming capacity is encoded by a polycistronic premRNA, where alternative splicing leads to the translation of functional distinct proteins such as E6, E6*, and E7. Here we show that splicing of HPV16 E6/E7 ORF casse...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1002620107

    authors: Rosenberger S,De-Castro Arce J,Langbein L,Steenbergen RD,Rösl F

    更新日期:2010-04-13 00:00:00

  • Mechanical properties of sensory hair bundles are reflected in their Brownian motion measured with a laser differential interferometer.

    abstract::By optically probing with a focused, low-power laser beam, we measured the spontaneous deflection fluctuations of the sensory hair bundles on frog saccular hair cells with a sensitivity of about 1 pm/square root of Hz. The preparation was illuminated by two orthogonally polarized laser beams separated by only about 0....

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.86.14.5371

    authors: Denk W,Webb WW,Hudspeth AJ

    更新日期:1989-07-01 00:00:00