Innate immune response to arenaviral infection: a focus on the highly pathogenic New World hemorrhagic arenaviruses.

Abstract:

:Arenaviruses are enveloped, negative-stranded RNA viruses that belong to the family Arenaviridae. This diverse family can be further classified into OW (Old World) and NW (New World) arenaviruses based on their antigenicity, phylogeny, and geographical distribution. Many of the NW arenaviruses are highly pathogenic viruses that cause systemic human infections characterized by hemorrhagic fever and/or neurological manifestations, constituting public health problems in their endemic regions. NW arenavirus infection induces a variety of host innate immune responses, which could contribute to the viral pathogenesis and/or influence the final outcome of virus infection in vitro and in vivo. On the other hand, NW arenaviruses have also developed several strategies to counteract the host innate immune response. We will review current knowledge regarding the interplay between the host innate immune response and NW arenavirus infection in vitro and in vivo, with emphasis on viral-encoded proteins and their effect on the type I interferon response.

journal_name

J Mol Biol

authors

Koma T,Huang C,Kolokoltsova OA,Brasier AR,Paessler S

doi

10.1016/j.jmb.2013.09.028

subject

Has Abstract

pub_date

2013-12-13 00:00:00

pages

4893-903

issue

24

eissn

0022-2836

issn

1089-8638

pii

S0022-2836(13)00612-8

journal_volume

425

pub_type

杂志文章,评审
  • Ensemble Modeling and Intracellular Aggregation of an Engineered Immunoglobulin-Like Domain.

    abstract::The production of recombinant proteins in Escherichia coli frequently results in the formation of insoluble protein aggregates called inclusion bodies (IBs). The determinants of IB formation remain poorly understood and are of much interest for biotechnological and research applications, as well as offering insight in...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2016.02.016

    authors: Trainor K,Gingras Z,Shillingford C,Malakian H,Gosselin M,Lipovšek D,Meiering EM

    更新日期:2016-03-27 00:00:00

  • Structurally constrained residues outside the binding motif are essential in the interaction of 14-3-3 and phosphorylated partner.

    abstract::14-3-3 proteins participate in many key cellular processes after binding to disordered phospho-partners. Usually, the phosphorylated state is an essential target for the binding. Here, we show for the first time residues other than those in the 14-3-3 binding motif that are essential for the binding between 14-3-3 and...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2010.12.043

    authors: Uhart M,Iglesias AA,Bustos DM

    更新日期:2011-03-04 00:00:00

  • Direct Evidence for Packaging Signal-Mediated Assembly of Bacteriophage MS2.

    abstract::Using cross-linking coupled to matrix-assisted laser desorption/ionization mass spectrometry and CLIP-Seq sequencing, we determined the peptide and oligonucleotide sequences at the interfaces between the capsid proteins and the genomic RNA of bacteriophage MS2. The results suggest that the same coat protein (CP)-RNA a...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2015.11.014

    authors: Rolfsson Ó,Middleton S,Manfield IW,White SJ,Fan B,Vaughan R,Ranson NA,Dykeman E,Twarock R,Ford J,Kao CC,Stockley PG

    更新日期:2016-01-29 00:00:00

  • Regulation of UvrD Helicase Activity by MutL.

    abstract::Escherichia coli UvrD is a superfamily 1 helicase/translocase involved in multiple DNA metabolic processes including methyl-directed mismatch DNA repair. Although a UvrD monomer can translocate along single-stranded DNA, a UvrD dimer is needed for processive helicase activity in vitro. E. coli MutL, a regulatory prote...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2018.08.022

    authors: Ordabayev YA,Nguyen B,Niedziela-Majka A,Lohman TM

    更新日期:2018-10-19 00:00:00

  • Contextual constraints on synonymous codon choice.

    abstract::We have studied the statistical constraints on synonymous codon choice to evaluate various proposals regarding the origin of the bias in synonymous codon usage observed by Fiers et al. (1975), Air et al. (1976), Grantham et al. (1980) and others. We have determined the statistical dependence of the degenerate third ba...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(83)90063-3

    authors: Lipman DJ,Wilbur WJ

    更新日期:1983-01-25 00:00:00

  • Construction of Escherichia coli amber suppressor tRNA genes. III. Determination of tRNA specificity.

    abstract::Using synthetic oligonucleotides, we have constructed a collection of Escherichia coli amber suppressor tRNA genes. In order to determine their specificities, these tRNAs were each used to suppress an amber (UAG) nonsense mutation in the E. coli dihydrofolate reductase gene fol. The mutant proteins were purified and s...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/S0022-2836(05)80258-X

    authors: Normanly J,Kleina LG,Masson JM,Abelson J,Miller JH

    更新日期:1990-06-20 00:00:00

  • Minor structural changes in a mutated human melanoma antigen correspond to dramatically enhanced stimulation of a CD4+ tumor-infiltrating lymphocyte line.

    abstract::While most immunotherapies for cancer have focused on eliciting specific CD8+ cytotoxic T lymphocyte killing of tumor cells, a mounting body of evidence suggests that stimulation of anti-tumor CD4+ T cell help may be required for highly effective therapy. Several MHC class II-restricted tumor antigens that specificall...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/S0022-2836(02)00370-4

    authors: Sundberg EJ,Sawicki MW,Southwood S,Andersen PS,Sette A,Mariuzza RA

    更新日期:2002-05-31 00:00:00

  • Context-dependent remodeling of structure in two large protein fragments.

    abstract::Protein folding involves the formation of secondary structural elements from the primary sequence and their association with tertiary assemblies. The relation of this primary sequence to a specific folded protein structure remains a central question in structural biology. An increasing body of evidence suggests that v...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2010.08.020

    authors: Schellenberg MJ,Ritchie DB,Wu T,Markin CJ,Spyracopoulos L,MacMillan AM

    更新日期:2010-10-01 00:00:00

  • Properties of supercoiled DNA in gel electrophoresis. The V-like dependence of mobility on topological constraint. DNA-matrix interactions.

    abstract::The dependence of the electrophoretic mobility of small DNA rings on topological constraint was investigated in acrylamide or agarose gels as a function of DNA size (from approximately 350 to 1400 base-pairs), gel concentration and nucleotide sequence. Under appropriate adjustment between the size of the DNA and the g...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(86)90282-2

    authors: Zivanovic Y,Goulet I,Prunell A

    更新日期:1986-12-05 00:00:00

  • NMR studies reveal the role of biomembranes in modulating ligand binding and release by intracellular bile acid binding proteins.

    abstract::Bile acid molecules are transferred vectorially between basolateral and apical membranes of hepatocytes and enterocytes in the context of the enterohepatic circulation, a process regulating whole body lipid homeostasis. This work addresses the role of the cytosolic lipid binding proteins in the intracellular transfer ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2009.10.014

    authors: Pedò M,Löhr F,D'Onofrio M,Assfalg M,Dötsch V,Molinari H

    更新日期:2009-12-18 00:00:00

  • The role of backbone motions in ligand binding to the c-Src SH3 domain.

    abstract::The Src homology 3 (SH3) domain of pp60(c-src) (Src) plays dual roles in signal transduction, through stabilizing the repressed form of the Src kinase and through mediating the formation of activated signaling complexes. Transition of the Src SH3 domain between a variety of binding partners during progression through ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2001.5083

    authors: Wang C,Pawley NH,Nicholson LK

    更新日期:2001-11-02 00:00:00

  • Rules for coupled expression of regulator and effector genes in inducible circuits.

    abstract::The induction of effector genes that encode enzymes is often controlled by the protein product of a regulator gene that is directly involved in the control of its own expression. This coupling of elementary gene circuits can lead to three patterns of regulator and effector gene expression. As effector gene expression ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1996.0011

    authors: Hlavacek WS,Savageau MA

    更新日期:1996-01-12 00:00:00

  • Crystallization and preliminary X-ray crystallographic analysis of probable amylase/protease inhibitor-B from rice seeds.

    abstract::Large crystals of probable amylase/protease inhibitor-B have been grown at room temperature from ammonium sulfate solution. The crystals grow within five days to dimensions of 0.6 mm x 0.6 mm x 0.6 mm. They diffract to at least 1.7 A upon exposure to synchrotron X-rays. The crystals belong to the space group P4(1)2(1)...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1993.1027

    authors: Hwang KY,Kim KK,Min K,Eom SH,Yu YG,Kim S,Sweet RM,Suh SW

    更新日期:1993-01-05 00:00:00

  • Headful packaging revisited: the packaging of more than one DNA molecule into a bacteriophage P1 head.

    abstract::Like a variety of other bacteriophages, such as T4 and P22, bacteriophage P1 packages DNA by a "headful" mechanism in which the capacity of the viral capsid determines the size of the single DNA molecule that is packaged. Because of the long-standing and general acceptance of this packaging mechanism, we were surprise...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1995.0287

    authors: Coren JS,Pierce JC,Sternberg N

    更新日期:1995-05-26 00:00:00

  • Peptide mimic of the HIV envelope gp120-gp41 interface.

    abstract::The human immunodeficiency virus envelope glycoprotein (Env) is composed of surface (gp120) and transmembrane (gp41) subunits, which are noncovalently associated on the viral surface. Human immunodeficiency virus Env mediates viral entry after undergoing a complex series of conformational changes induced by interactio...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2007.12.001

    authors: Kim S,Pang HB,Kay MS

    更新日期:2008-02-22 00:00:00

  • Accommodation of amino acid insertions in an alpha-helix of T4 lysozyme. Structural and thermodynamic analysis.

    abstract::One to four alanines were inserted by site-directed mutagenesis at three different locations within the alpha-helix comprising residues 39 to 50 in bacteriophage T4 lysozyme. All insertion mutants were correctly folded and catalytically active although the insertions led to a thermal destabilization by 1.1 to 4.2 kcal...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1994.1195

    authors: Heinz DW,Baase WA,Zhang XJ,Blaber M,Dahlquist FW,Matthews BW

    更新日期:1994-02-25 00:00:00

  • Molecular Organization of Soluble Type III Secretion System Sorting Platform Complexes.

    abstract::Many medically relevant Gram-negative bacteria use the type III secretion system (T3SS) to translocate effector proteins into the host for their invasion and intracellular survival. A multi-protein complex located at the cytosolic interface of the T3SS is proposed to act as a sorting platform by selecting and targetin...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2019.07.004

    authors: Bernal I,Börnicke J,Heidemann J,Svergun D,Horstmann JA,Erhardt M,Tuukkanen A,Uetrecht C,Kolbe M

    更新日期:2019-09-06 00:00:00

  • Celastrol inhibits Tat-mediated human immunodeficiency virus (HIV) transcription and replication.

    abstract::Current drugs used for antiretroviral therapy against human immunodeficiency virus (HIV) have a narrow spectrum of activity and, more often, have associated toxicities and severe side effects in addition to developing resistance. Thus, there is a need to develop new therapeutic strategies against HIV/AIDS to complemen...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2011.04.013

    authors: Narayan V,Ravindra KC,Chiaro C,Cary D,Aggarwal BB,Henderson AJ,Prabhu KS

    更新日期:2011-07-29 00:00:00

  • The three-dimensional structure at 2.4 A resolution of glycosylated proteinase A from the lysosome-like vacuole of Saccharomyces cerevisiae.

    abstract::The crystal structures of glycosylated native proteinase A, an aspartic proteinase found in the vacuole of Saccharomyces cerevisiae, and its complex with a difluorostatone-containing tripeptide have been determined by molecular replacement to 3.5 A and 2.4 A resolutions, respectively. Superposition of the bound and na...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1996.0880

    authors: Aguilar CF,Cronin NB,Badasso M,Dreyer T,Newman MP,Cooper JB,Hoover DJ,Wood SP,Johnson MS,Blundell TL

    更新日期:1997-04-11 00:00:00

  • Temporal regulation and overlap organization of two Caulobacter flagellar genes.

    abstract::The biogenesis of the bacterial flagellum and chemotaxis apparatus in both Escherichia coli and Caulobacter crescentus requires the ordered expression of over 40 genes whose expression is controlled by a trans-acting regulatory hierarchy. In C. crescentus, additional control mechanisms ensure that the transcription of...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(89)90365-3

    authors: Kaplan JB,Dingwall A,Bryan R,Champer R,Shapiro L

    更新日期:1989-01-05 00:00:00

  • Relative Binding Affinity Prediction of Charge-Changing Sequence Mutations with FEP in Protein-Protein Interfaces.

    abstract::Building on the substantial progress that has been made in using free energy perturbation (FEP) methods to predict the relative binding affinities of small molecule ligands to proteins, we have previously shown that results of similar quality can be obtained in predicting the effect of mutations on the binding affinit...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2019.02.003

    authors: Clark AJ,Negron C,Hauser K,Sun M,Wang L,Abel R,Friesner RA

    更新日期:2019-03-29 00:00:00

  • Involvement of the domains of histones H1 and H5 in the structural organization of soluble chromatin.

    abstract::We have studied in reconstitution experiments the conditions under which peptides derived from histones H1 and H5 are bound in chromatin and to what extent they are involved in the organization of chromatin fibers. The fragments of rat liver histone H1 (rH1) and chicken erythrocytes H1 (cH1) and H5 (cH5) used were the...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(83)80102-8

    authors: Thoma F,Losa R,Koller T

    更新日期:1983-07-05 00:00:00

  • Ring closure probabilities for DNA fragments by Monte Carlo simulation.

    abstract::The rate of ligation of DNA molecules into circular forms depends on the ring closure probability, commonly called the j-factor, which is a sensitive measure of the extent to which thermal fluctuations contribute to bending and twisting of DNA molecules in solution. We present a theoretical treatment of the cyclizatio...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(86)90381-5

    authors: Levene SD,Crothers DM

    更新日期:1986-05-05 00:00:00

  • Structural organization and assembly of flagellar hook protein from Salmonella typhimurium.

    abstract::The terminal regions of monomeric hook protein from Salmonella typhimurium are known to be highly mobile and exposed to the solvent. Although hook protein exhibits an unusual far-UV circular dichroism spectrum, resembling that of random coil structures, our calorimetric experiments clearly demonstrate that the molecul...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1995.0453

    authors: Vonderviszt F,Závodszky P,Ishimura M,Uedaira H,Namba K

    更新日期:1995-08-25 00:00:00

  • NTF2 monomer-dimer equilibrium.

    abstract::Nuclear transport factor 2 (NTF2) mediates nuclear import of RanGDP, a central component of many nuclear trafficking pathways. NTF2 is a homodimer and each chain has independent binding sites for RanGDP and nuclear pore proteins (nucleoporins) that contain FxFG sequence repeats. We show here that the monomer-dimer dis...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2001.5136

    authors: Chaillan-Huntington C,Butler PJ,Huntington JA,Akin D,Feldherr C,Stewart M

    更新日期:2001-11-30 00:00:00

  • Resolution of Holliday junction substrates by human topoisomerase I.

    abstract::Prompted by the close relationship between tyrosine recombinases and type IB topoisomerases we have investigated the ability of human topoisomerase I to resolve the typical intermediate of recombinase catalysis, the Holliday junction. We demonstrate that human topoisomerase I catalyzes unidirectional resolution of a s...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2006.10.050

    authors: Hede MS,Petersen RL,Frøhlich RF,Krüger D,Andersen FF,Andersen AH,Knudsen BR

    更新日期:2007-01-26 00:00:00

  • αB-crystallin polydispersity is a consequence of unbiased quaternary dynamics.

    abstract::The inherent heterogeneity of many protein assemblies complicates characterization of their structure and dynamics, as most biophysical techniques require homogeneous preparations of isolated components. For this reason, quantitative studies of the molecular chaperone αB-crystallin, which populates a range of intercon...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2011.07.016

    authors: Baldwin AJ,Lioe H,Robinson CV,Kay LE,Benesch JL

    更新日期:2011-10-21 00:00:00

  • Interaction Analyses of the Integrin β2 Cytoplasmic Tail with the F3 FERM Domain of Talin and 14-3-3ζ Reveal a Ternary Complex with Phosphorylated Tail.

    abstract::Integrins, which are heterodimeric (α and β subunits) signal-transducer proteins, are essential for cell adhesion and migration. β cytosolic tails (β-CTs) of integrins interact with a number of cytosolic proteins including talin, Dok1, and 14-3-3ζ. The formation of multiprotein complexes with β-CTs is involved in the ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2016.08.014

    authors: Chatterjee D,Zhiping LL,Tan SM,Bhattacharjya S

    更新日期:2016-10-09 00:00:00

  • Calorimetric analysis of the Ca(2+)-binding betagamma-crystallin homolog protein S from Myxococcus xanthus: intrinsic stability and mutual stabilization of domains.

    abstract::The betagamma-crystallin superfamily consists of a class of homologous two-domain proteins with Greek-key fold. Protein S, a Ca(2+)-binding spore-coat protein from the soil bacterium Myxococcus xanthus exhibits a high degree of sequential and structural homology with gammaB-crystallin from the vertebrate eye lens. In ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1999.3146

    authors: Wenk M,Jaenicke R

    更新日期:1999-10-15 00:00:00

  • Impaired folding of the mitochondrial small TIM chaperones induces clearance by the i-AAA protease.

    abstract::The intermembrane space of mitochondria contains a dedicated chaperone network-the small translocase of the inner membrane (TIM) family-for the sorting of hydrophobic precursors. All small TIMs are defined by the presence of a twin CX(3)C motif and the monomeric proteins are stabilized by two intramolecular disulfide ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2012.09.019

    authors: Baker MJ,Mooga VP,Guiard B,Langer T,Ryan MT,Stojanovski D

    更新日期:2012-12-14 00:00:00