In-depth proteomic and glycomic analysis of the adult-stage Cooperia oncophora excretome/secretome.

Abstract:

:Cooperia oncophora is one of the most common intestinal parasitic nematodes in cattle worldwide. To date, C. oncophora infections are treated using broad-spectrum anthelmintics. However, during the past decade, reports of anthelmintic resistance in this parasite species have emerged worldwide, necessitating new avenues for its control, possibly through vaccination. In this frame, we analyzed the adult-stage C. oncophora excretome/secretome (ES), covering both the protein and glycan components, since this fraction constitutes the primary interface between parasite and host and may hold potential vaccine candidates. Two-dimensional gel electrophoretic separation of the ES material enabled the MALDI-TOF mass spectrometry (MS)-directed identification of 12 distinct proteins, grouped in three separate molecular weight fractions: (i) a high molecular weight fraction consisting of a double-domain activation-associated secreted protein (ASP), (ii) a midmolecular weight fraction predominantly containing a single-domain ASP, a thioredoxin peroxidase and innexin, and (iii) a low molecular weight protein pool essentially holding two distinct low molecular weight antigens. Further MS-driven glycan analysis mapped a variety of N-glycans to the midmolecular weight single-domain ASP, with Man6GlcNAc2 oligomannosyl glycans as the major species. The predominance of the nonglycosylated double-domain ASP in the high-molecular weight fraction renders it ideal for advancement toward vaccine trials and development.

journal_name

J Proteome Res

authors

Borloo J,De Graef J,Peelaers I,Nguyen DL,Mitreva M,Devreese B,Hokke CH,Vercruysse J,Claerebout E,Geldhof P

doi

10.1021/pr400114y

subject

Has Abstract

pub_date

2013-09-06 00:00:00

pages

3900-11

issue

9

eissn

1535-3893

issn

1535-3907

journal_volume

12

pub_type

杂志文章
  • Quantitative Proteomic Analysis of Small and Large Extracellular Vesicles (EVs) Reveals Enrichment of Adhesion Proteins in Small EVs.

    abstract::Extracellular vesicles (EVs) are important mediators of cell-cell communication due to their cargo content of proteins, lipids, and RNAs. We previously reported that small EVs (SEVs) called exosomes promote directed and random cell motility, invasion, and serum-independent growth. In contrast, larger EVs (LEVs) were n...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00647

    authors: Jimenez L,Yu H,McKenzie AJ,Franklin JL,Patton JG,Liu Q,Weaver AM

    更新日期:2019-03-01 00:00:00

  • Proteome analysis of silkworm, Bombyx mori, larval gonads: characterization of proteins involved in sexual dimorphism and gametogenesis.

    abstract::Sexual dimorphism is initialed by the components of the sex determination pathway and is most evident in gonads and germ cells. Although striking dimorphic expressions have been detected at the transcriptional level between the silkworm larval testis and the ovary, the sex-dimorphic expressions at the protein level ha...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300920z

    authors: Chen JE,Li JY,You ZY,Liu LL,Liang JS,Ma YY,Chen M,Zhang HR,Jiang ZD,Zhong BX

    更新日期:2013-06-07 00:00:00

  • Proteomics reveals that redox regulation is disrupted in patients with ethylmalonic encephalopathy.

    abstract::Deficiency of the sulfide metabolizing protein ETHE1 is the cause of ethylmalonic encephalopathy (EE), an inherited and severe metabolic disorder. To study the molecular effects of EE, we performed a proteomics study on mitochondria from cultured patient fibroblast cells. Samples from six patients were analyzed and re...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr101218d

    authors: Palmfeldt J,Vang S,Stenbroen V,Pavlou E,Baycheva M,Buchal G,Monavari AA,Augoustides-Savvopoulou P,Mandel H,Gregersen N

    更新日期:2011-05-06 00:00:00

  • Alterations in the Glycan Profile of Mouse Transferrin: New Insights in Collagen-Induced Arthritis.

    abstract::Transferrin purification from mice serum samples by immunoaffinity chromatography (IAC) was optimized in order to study the possible modifications occurring in its glycans in collagen-induced arthritis (CIA) samples. SDS-PAGE and nanoLC-MS/MS were used to monitor the IAC purification performance. Afterward, a relative...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00016

    authors: Mancera-Arteu M,Giménez E,Sancho J,Sanz-Nebot V

    更新日期:2020-04-03 00:00:00

  • Network-Based Analysis on Orthogonal Separation of Human Plasma Uncovers Distinct High Density Lipoprotein Complexes.

    abstract::High density lipoprotein (HDL) particles are blood-borne complexes whose plasma levels have been associated with protection from cardiovascular disease (CVD). Recent studies have demonstrated the existence of distinct HDL subspecies; however, these have been difficult to isolate and characterize biochemically. Here, w...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00419

    authors: Li H,Gordon SM,Zhu X,Deng J,Swertfeger DK,Davidson WS,Lu LJ

    更新日期:2015-08-07 00:00:00

  • ¹H NMR metabolic profiling of plasma reveals additional phenotypes in knockout mouse models.

    abstract::The International Mouse Phenotyping Consortium program has been established to ascribe biological functions to systematically knocked-out (KO) genes by in vivo and ex vivo phenotyping. The plasma clinical chemistry screen includes an assessment of liver, kidney, and bone function and provides a basic lipid profile and...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr501039k

    authors: Probert F,Rice P,Scudamore CL,Wells S,Williams R,Hough TA,Cox IJ

    更新日期:2015-05-01 00:00:00

  • Alterations of histone H1 phosphorylation during bladder carcinogenesis.

    abstract::There is a crucial need for development of prognostic and predictive biomarkers in human bladder carcinogenesis in order to personalize preventive and therapeutic strategies and improve outcomes. Epigenetic alterations, such as histone modifications, are implicated in the genetic dysregulation that is fundamental to c...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400143x

    authors: Telu KH,Abbaoui B,Thomas-Ahner JM,Zynger DL,Clinton SK,Freitas MA,Mortazavi A

    更新日期:2013-07-05 00:00:00

  • Differential N-Glycosylation Patterns in Lung Adenocarcinoma Tissue.

    abstract::To decrease the mortality of lung cancer, better screening and diagnostic tools as well as treatment options are needed. Protein glycosylation is one of the major post-translational modifications that is altered in cancer, but it is not exactly clear which glycan structures are affected. A better understanding of the ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00255

    authors: Ruhaak LR,Taylor SL,Stroble C,Nguyen UT,Parker EA,Song T,Lebrilla CB,Rom WN,Pass H,Kim K,Kelly K,Miyamoto S

    更新日期:2015-11-06 00:00:00

  • Cyanogen bromide peptides of the fibrillar collagens I, III, and V and their mass spectrometric characterization: detection of linear peptides, peptide glycosylation, and cross-linking peptides involved in formation of homo- and heterotypic fibrils.

    abstract::The network of the fibrillar collagens I, III, and V, extracted from fetal calf skin and cleaved with cyanogen bromide, was studied by means of ultraviolet matrix-assisted laser desorption ionization time-of-flight mass spectrometry (UV-MALDI MS). Nearly all of the expected cyanogen bromide peptides of the different a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070318r

    authors: Henkel W,Dreisewerd K

    更新日期:2007-11-01 00:00:00

  • Proteogenomic Discovery of a Small, Novel Protein in Yeast Reveals a Strategy for the Detection of Unannotated Short Open Reading Frames.

    abstract::In recent years, proteomic data have contributed to genome annotation efforts, most notably in humans and mice, and spawned a field termed "proteogenomics". Yeast, in contrast with higher eukaryotes, has a small genome, which has lent itself to simpler ORF prediction. Despite this, continual advances in mass spectrome...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00734

    authors: Yagoub D,Tay AP,Chen Z,Hamey JJ,Cai C,Chia SZ,Hart-Smith G,Wilkins MR

    更新日期:2015-12-04 00:00:00

  • Identification of Plasma Metabolites Prognostic of Acute Kidney Injury after Cardiac Surgery with Cardiopulmonary Bypass.

    abstract::Acute kidney injury (AKI) is a frequent complication after cardiopulmonary bypass, but early detection of postoperative AKI remains challenging. Protein biomarkers predict AKI excellently in homogeneous cohorts but are less reliable in patients suffering from various comorbidities. We employed nuclear magnetic resonan...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00219

    authors: Zacharias HU,Hochrein J,Vogl FC,Schley G,Mayer F,Jeleazcov C,Eckardt KU,Willam C,Oefner PJ,Gronwald W

    更新日期:2015-07-02 00:00:00

  • Proteomics, genomics, and pathway analyses of Escherichia coli and Staphylococcus aureus infected milk whey reveal molecular pathways and networks involved in mastitis.

    abstract::Gram-negative and -positive bacteria elicit different response patterns by the host. The proteomic profiles of milk whey samples from cows naturally infected with Escherichia coli or Staphyloccocus aureus as compared to whey from healthy cows were determined by one-dimensional, liquid chromatography-tandem mass spectr...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100336e

    authors: Ibeagha-Awemu EM,Ibeagha AE,Messier S,Zhao X

    更新日期:2010-09-03 00:00:00

  • Dissolving Peptides in 0.1% Formic Acid Brings Risk of Artificial Formylation.

    abstract::The ability of concentrated formic acid to formylate reactive amino acid residues is known from previous reports. In contrast, solvents containing a low concentration of formic acid are generally recognized as a safe environment for proteomic applications. The primary objective of this study was to explain the excessi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00823

    authors: Lenčo J,Khalikova MA,Švec F

    更新日期:2020-03-06 00:00:00

  • Absolute protein quantification by LC/MS(E) for global analysis of salicylic acid-induced plant protein secretion responses.

    abstract::The plant cell wall is a dynamic cellular compartment consisting of a complex matrix of components that can change dramatically in response to environmental stresses. During pathogen attack, for instance, a wide spectrum of proteins that participate in various sequential processes involved in plant defense is secreted...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800649s

    authors: Cheng FY,Blackburn K,Lin YM,Goshe MB,Williamson JD

    更新日期:2009-01-01 00:00:00

  • Proteomic profiling of plasma in Huntington's disease reveals neuroinflammatory activation and biomarker candidates.

    abstract::Huntington's disease (HD) causes widespread CNS changes and systemic abnormalities including endocrine and immune dysfunction. HD biomarkers are needed to power clinical trials of potential treatments. We used multiplatform proteomic profiling to reveal plasma changes with HD progression. Proteins of interest were eva...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0700753

    authors: Dalrymple A,Wild EJ,Joubert R,Sathasivam K,Björkqvist M,Petersén A,Jackson GS,Isaacs JD,Kristiansen M,Bates GP,Leavitt BR,Keir G,Ward M,Tabrizi SJ

    更新日期:2007-07-01 00:00:00

  • PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

    abstract::Correct phosphorylation site assignment is a critical aspect of phosphoproteomic analysis. Large-scale phosphopeptide data sets that are generated through liquid chromatography-coupled tandem mass spectrometry (LC-MS/MS) analysis often contain hundreds or thousands of phosphorylation sites that require validation. To ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800169k

    authors: Ruttenberg BE,Pisitkun T,Knepper MA,Hoffert JD

    更新日期:2008-07-01 00:00:00

  • Proteomic analysis of human serum by two-dimensional differential gel electrophoresis after depletion of high-abundant proteins.

    abstract::Two-dimensional differential gel electrophoresis (2-D DIGE) was used to analyze human serum following the removal of albumin and five other high-abundant serum proteins. After protein removal, serum was analyzed by SDS-PAGE as a preliminary screen, and significant differences between four high-abundant protein removal...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr049921p

    authors: Chromy BA,Gonzales AD,Perkins J,Choi MW,Corzett MH,Chang BC,Corzett CH,McCutchen-Maloney SL

    更新日期:2004-11-01 00:00:00

  • Combined experimental and statistical strategy for mass spectrometry based serum protein profiling for diagnosis of breast cancer: a case-control study.

    abstract::Serum protein profiling by mass spectrometry is a promising method for early detection of cancer. We have implemented a combined strategy based on matrix-assisted laser desorption ionization mass spectrometry (MALDI MS) and statistical data analysis for serum protein profiling and applied it in a well-described breast...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr7007576

    authors: Callesen AK,Vach W,Jørgensen PE,Cold S,Tan Q,Depont Christensen R,Mogensen O,Kruse TA,Jensen ON,Madsen JS

    更新日期:2008-04-01 00:00:00

  • Automated N-glycopeptide identification using a combination of single- and tandem-MS.

    abstract::We describe Peptoonist, a program that can automatically identify the glycans (sugars) present at each N-glycosylation site of a protein. The input to Peptoonist is a series of mass spectra, both MS and MS/MS, obtained from a liquid chromatography (LC) run of proteolytically digested purified glycoproteins. The progra...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070239f

    authors: Goldberg D,Bern M,Parry S,Sutton-Smith M,Panico M,Morris HR,Dell A

    更新日期:2007-10-01 00:00:00

  • Variability in Streptavidin-Sepharose Matrix Quality Can Significantly Affect Proximity-Dependent Biotinylation (BioID) Data.

    abstract::Due to their ease of use and high binding affinity, streptavidin-based purification tools have become widely used for isolating biotinylated compounds from complex mixtures. We and others routinely use streptavidin-sepharose matrices to isolate biotinylated polypeptides generated in proximity-dependent biotinylation a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00117

    authors: St-Germain JR,Samavarchi Tehrani P,Wong C,Larsen B,Gingras AC,Raught B

    更新日期:2020-08-07 00:00:00

  • Urinary proteome profiling using microfluidic technology on a chip.

    abstract::Clinical diagnostics and biomarker discovery are the major focuses of current clinical proteomics. In the present study, we applied microfluidic technology on a chip for proteome profiling of human urine from 31 normal healthy individuals (15 males and 16 females), 6 patients with diabetic nephropathy (DN), and 4 pati...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060586+

    authors: Thongboonkerd V,Songtawee N,Sritippayawan S

    更新日期:2007-05-01 00:00:00

  • Francisella tularensis LVS surface and membrane proteins as targets of effective post-exposure immunization for tularemia.

    abstract::Francisella tularensis causes disease (tularemia) in a large number of mammals, including man. We previously demonstrated enhanced efficacy of conventional antibiotic therapy for tularemia by postexposure passive transfer of immune sera developed against a F. tularensis LVS membrane protein fraction (MPF). However, th...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500628k

    authors: Chandler JC,Sutherland MD,Harton MR,Molins CR,Anderson RV,Heaslip DG,Bosio CM,Belisle JT

    更新日期:2015-02-06 00:00:00

  • Ethylenediaminetetraacetic acid increases identification rate of phosphoproteomics in real biological samples.

    abstract::We have developed a novel approach to enhance phosphopeptide identification in liquid chromatography/mass spectrometry (LC/MS)-based phosphoproteomics. After enrichment of phosphopeptides with immobilized metal affinity chromatography (IMAC) and titanium dioxide (TiO(2)) microcolumns, samples were coinjected with ethy...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900918h

    authors: Nakamura T,Myint KT,Oda Y

    更新日期:2010-03-05 00:00:00

  • Heterogeneous nuclear ribonucleoprotein A1 is identified as a potential biomarker for colorectal cancer based on differential proteomics technology.

    abstract::Colorectal cancer (CRC) is the third most common cancer worldwide and has poor prognosis. To identify the proteins involved in colorectal carcinogenesis, we employed 2-DE and MALDI-TOF/TOF-based proteomics approach to study the differentially expressed proteins in tumor and adjacent nontumor tissue samples. Samples fr...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900365e

    authors: Ma YL,Peng JY,Zhang P,Huang L,Liu WJ,Shen TY,Chen HQ,Zhou YK,Zhang M,Chu ZX,Qin HL

    更新日期:2009-10-01 00:00:00

  • Introduction to the Food and Drug Administration (FDA) regulatory process.

    abstract::FDA oversight of medical devices, including in vitro diagnostic devices (IVDs or laboratory tests), in the United States was a direct result of the passage of the Medical Device Amendments of 1976. This law introduced a series of general controls for medical devices including registration and listing, requirements for...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/pr050059a

    authors: Hackett JL,Gutman SI

    更新日期:2005-07-01 00:00:00

  • Relative and Quantitative Phosphoproteome Analysis of Macrophages in Response to Infection by Virulent and Avirulent Mycobacteria Reveals a Distinct Role of the Cytosolic RNA Sensor RIG-I in Mycobacterium tuberculosis Pathogenesis.

    abstract::Comparative phosphoproteomics of Mycobacterium tuberculosis (Mtb)- and Mycobacterium bovis BCG (BCG)-infected macrophages could be instrumental in understanding the characteristic post-translational modifications of host proteins and their subsequent involvement in determining Mtb pathogenesis. To identify proteins ac...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00895

    authors: Choudhary E,Bullen CK,Goel R,Singh AK,Praharaj M,Thakur P,Dhiman R,Bishai WR,Agarwal N

    更新日期:2020-06-05 00:00:00

  • Deciphering the Molecular Diversity of an Ant Venom Peptidome through a Venomics Approach.

    abstract::The peptide toxins in the venoms of small invertebrates such as stinging ants have rarely been studied due to the limited amount of venom available per individual. We used a venomics strategy to identify the molecular diversity of the venom peptidome for the myrmicine ant Tetramorium bicarinatum. The methodology inclu...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00452

    authors: Touchard A,Téné N,Song PCT,Lefranc B,Leprince J,Treilhou M,Bonnafé E

    更新日期:2018-10-05 00:00:00

  • Acute phencyclidine treatment induces extensive and distinct protein phosphorylation in rat frontal cortex.

    abstract::Phencyclidine (PCP), a noncompetitive N-methyl-D-aspartate receptor antagonist, induces psychotomimetic effects in humans and animals. Administration of PCP to rodents is used as a preclinical model for schizophrenia; however, the molecular mechanisms underlying the symptoms remain largely unknown. Acute PCP treatment...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr4010794

    authors: Palmowski P,Rogowska-Wrzesinska A,Williamson J,Beck HC,Mikkelsen JD,Hansen HH,Jensen ON

    更新日期:2014-03-07 00:00:00

  • Liquid chromatography-mass spectrometry based metabolomics study of cloned versus normal pigs fed either restricted or ad libitum high-energy diets.

    abstract::Genetically identical cloned pigs should in principle eliminate biological variation and provide more pronounced effects when subjected to, e.g., dietary interventions, but little is known about how phenotype and phenotypic variation is affected by cloning. Therefore, an investigation of the metabolome of cloned pigs ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr201253h

    authors: Christensen KL,Hedemann MS,Jørgensen H,Stagsted J,Knudsen KE

    更新日期:2012-07-06 00:00:00

  • Proteomics analysis of rice lesion mimic mutant (spl1) reveals tightly localized probenazole-induced protein (PBZ1) in cells undergoing programmed cell death.

    abstract::Numerous reports have predicted/hypothesized a role for probenazole-induced protein (PBZ1) as a molecular marker in rice self-defense mechanism. However, the precise function of PBZ1 remains unknown. In the present study, we examined PBZ1 as a putative cell death marker in rice. For this, we focused our attention on a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr700878t

    authors: Kim ST,Kim SG,Kang YH,Wang Y,Kim JY,Yi N,Kim JK,Rakwal R,Koh HJ,Kang KY

    更新日期:2008-04-01 00:00:00