Abstract:
:The hypoxia inducible factor (HIF) system is central to the signaling of low oxygen (hypoxia) in animals. The levels of HIF-α isoforms are regulated in an oxygen-dependent manner by the activity of the HIF prolyl-hydroxylases (PHD or EGLN enzymes), which are Fe(II) and 2-oxoglutarate (2OG) dependent oxygenases. Here, we describe biochemical, crystallographic, cellular profiling, and animal studies on PHD inhibitors including selectivity studies using a representative set of human 2OG oxygenases. We identify suitable probe compounds for use in studies on the functional effects of PHD inhibition in cells and in animals.
journal_name
ACS Chem Bioljournal_title
ACS chemical biologyauthors
Chowdhury R,Candela-Lena JI,Chan MC,Greenald DJ,Yeoh KK,Tian YM,McDonough MA,Tumber A,Rose NR,Conejo-Garcia A,Demetriades M,Mathavan S,Kawamura A,Lee MK,van Eeden F,Pugh CW,Ratcliffe PJ,Schofield CJdoi
10.1021/cb400088qsubject
Has Abstractpub_date
2013-07-19 00:00:00pages
1488-96issue
7eissn
1554-8929issn
1554-8937journal_volume
8pub_type
杂志文章abstract::Calicheamicin γ1I (1) is an enediyne antitumor compound produced by Micromonospora echinospora spp. calichensis, and its biosynthetic gene cluster has been previously reported. Despite extensive analysis and biochemical study, several genes in the biosynthetic gene cluster of 1 remain functionally unassigned. Using a ...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb500327m
更新日期:2014-10-17 00:00:00
abstract::Polyalkoxybenzenes are plant components displaying a wide range of biological activities. In these studies, we synthesized apiol and dillapiol isoxazoline analogues of combretastatins and evaluated their effect on sea urchin embryos. We have shown that p-methoxyphenyl isoxazoline caused sea urchin embryo immobilizatio...
journal_title:ACS chemical biology
pub_type: 信件
doi:10.1021/cb700163q
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journal_title:ACS chemical biology
pub_type: 杂志文章
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journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.5b00889
更新日期:2016-01-15 00:00:00
abstract::Clostridium difficile, a leading cause of hospital-acquired infection, possesses a dense surface layer (S-layer) that mediates host-pathogen interactions. The key structural components of the S-layer result from proteolytic cleavage of a precursor protein, SlpA, into high- and low-molecular-weight components. Here we ...
journal_title:ACS chemical biology
pub_type: 杂志文章
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更新日期:2010-03-19 00:00:00
abstract::Virus entry depends on biomolecular recognition at the surface of cell membranes. In the case of glycolipid receptors, these events are expected to be influenced by how the glycan epitope close to the membrane is presented to the virus. This presentation of membrane-associated glycans is more restricted than that of g...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.7b00152
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abstract::RNA methyltransferases (RNMTs) play important roles in RNA stability, splicing, and epigenetic mechanisms. They constitute a promising target class that is underexplored by the medicinal chemistry community. Information of relevance to drug design can be extracted from the rich structural coverage of human RNMTs. In t...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.5b00781
更新日期:2016-03-18 00:00:00
abstract::Enzymatic transfer of the AMP portion of ATP to substrate proteins has recently been described as an essential mechanism of bacterial infection for several pathogens. The first AMPylator to be discovered, VopS from Vibrio parahemolyticus, catalyzes the transfer of AMP onto the host GTPases Cdc42 and Rac1. Modification...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb4006886
更新日期:2014-02-21 00:00:00
abstract::Agonists and antagonists of the nicotinic acetylcholine receptor (nAChR) are used to treat nicotine addiction, neuromuscular disorders, and neurological diseases. In designing small molecule therapeutics with the nAChR as a target, it is useful to identify chemical parameters that correlate with ability to activate th...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb800189y
更新日期:2008-11-21 00:00:00
abstract::Pentamycin is a polyene antibiotic, registered in Switzerland for the treatment of vaginal candidiasis, trichomoniasis, and mixed infections. Chemical instability has hindered its widespread application and development as a drug. Here, we report the identification of Streptomyces sp. S816, isolated from Philippine man...
journal_title:ACS chemical biology
pub_type: 杂志文章
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journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.0c00842
更新日期:2021-01-15 00:00:00
abstract::The ATP site of kinases displays remarkable conformational flexibility when accommodating chemically diverse small molecule inhibitors. The so-called activation segment, whose conformation controls catalytic activity and access to the substrate binding pocket, can undergo a large conformational change with the active ...
journal_title:ACS chemical biology
pub_type: 杂志文章,评审
doi:10.1021/cb500129t
更新日期:2014-06-20 00:00:00
abstract::Acute and specific sensing of diatomic gas molecules is an essential facet of biological signaling. Heme nitric oxide/oxygen binding (H-NOX) proteins are a family of gas sensors found in diverse classes of bacteria and eukaryotes. The most commonly characterized bacterial H-NOX domains are from facultative anaerobes a...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.6b00431
更新日期:2016-08-19 00:00:00
abstract::Detection of metabolites and post-translational modifications can be achieved using the azide as a bioorthogonal chemical reporter. Once introduced into target biomolecules, either metabolically or through chemical modification, the azide can be tagged with probes using one of three highly selective reactions: the Sta...
journal_title:ACS chemical biology
pub_type: 信件
doi:10.1021/cb6003228
更新日期:2006-11-21 00:00:00
abstract::The innate immune system provides the first line of defense against pathogens through the recognition of nonspecific patterns in RNA to protect the cell in a generalized way. The human RNA-activated protein kinase, PKR, is a dsRNA binding protein and an essential sensor in the innate immune response, which recognizes ...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.6b00081
更新日期:2016-04-15 00:00:00
abstract::Invertebrate animal models (mainly the nematode Caenorhabditis elegans and the fruit fly Drosophila melanogaster) are gaining momentum as screening tools in drug discovery. These organisms combine genetic amenability, low cost, and culture conditions compatible with large-scale screens. Their main advantage is to allo...
journal_title:ACS chemical biology
pub_type: 杂志文章,评审
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更新日期:2007-04-24 00:00:00
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journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb300413m
更新日期:2013-01-18 00:00:00
abstract::Mutations that constitutively activate the phosphatidyl-inositol-3-kinase (PI3K) signaling pathway, including alterations in PI3K, PTEN, and AKT, are found in a variety of human cancers, implicating the PI3K lipid kinase as an attractive target for the development of therapeutic agents to treat cancer and other relate...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb800039y
更新日期:2008-05-16 00:00:00
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journal_title:ACS chemical biology
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更新日期:2009-08-21 00:00:00
abstract::Angucyclines are a structurally diverse class of actinobacterial natural products defined by their varied polycyclic ring systems, which display a wide range of biological activities. We recently discovered lugdunomycin (1), a highly rearranged polyketide antibiotic derived from the angucycline backbone that is synthe...
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更新日期:2017-08-18 00:00:00
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journal_title:ACS chemical biology
pub_type: 杂志文章
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更新日期:2019-01-18 00:00:00
abstract::Protein arginine N-methyltransferase 3 (PRMT3) belongs to the family of type I PRMTs and harbors the activity to use S-adenosyl-l-methionine (SAM) as a methyl-donor cofactor for protein arginine labeling. However, PRMT3's functions remain elusive with the lacked knowledge of its target scope in cellular settings. Insp...
journal_title:ACS chemical biology
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更新日期:2014-02-21 00:00:00
abstract::We recently reported two novel tools for precisely controlling and quantifying Cas9 activity: a chemically inducible Cas9 variant (ciCas9) that can be rapidly activated by small molecules and a ddPCR assay for time-resolved measurement of DNA double strand breaks (DSB-ddPCR). Here, we further demonstrate the potential...
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journal_title:ACS chemical biology
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doi:10.1021/acschembio.6b00315
更新日期:2016-08-19 00:00:00
abstract::The LpxC enzyme in the lipid A biosynthetic pathway is one of the most promising and clinically unexploited antibiotic targets for treatment of multidrug-resistant Gram-negative infections. Progress in medicinal chemistry has led to the discovery of potent LpxC inhibitors with a variety of chemical scaffolds and disti...
journal_title:ACS chemical biology
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更新日期:2014-01-17 00:00:00
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journal_title:ACS chemical biology
pub_type: 杂志文章,评审
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journal_title:ACS chemical biology
pub_type: 杂志文章
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更新日期:2011-12-16 00:00:00