Histo-Blood Group Antigen Presentation Is Critical for Binding of Norovirus VLP to Glycosphingolipids in Model Membranes.

Abstract:

:Virus entry depends on biomolecular recognition at the surface of cell membranes. In the case of glycolipid receptors, these events are expected to be influenced by how the glycan epitope close to the membrane is presented to the virus. This presentation of membrane-associated glycans is more restricted than that of glycans in solution, particularly because of orientational constraints imposed on the glycolipid through its lateral interactions with other membrane lipids and proteins. We have developed and employed a total internal reflection fluorescence microscopy-based binding assay and a scheme for molecular dynamics (MD) membrane simulations to investigate the consequences of various glycan presentation effects. The system studied was histo-blood group antigen (HBGA) epitopes of membrane-bound glycosphingolipids (GSLs) derived from small intestinal epithelium of humans (type 1 chain) and dogs (type 2 chain) interacting with GII.4 norovirus-like particles. Our experimental results showed strong binding to all lipid-linked type 1 chain HBGAs but no or only weak binding to the corresponding type 2 chain HBGAs. This is in contrast to results derived from STD experiments with free HBGAs in solution where binding was observed for Lewis x. The MD data suggest that the strong binding to type 1 chain glycolipids was due to the well-exposed (1,2)-linked α-l-Fucp and (1,4)-linked α-l-Fucp residues, while the weaker binding or lack of binding to type 2 chain HBGAs was due to the very restricted accessibility of the (1,3)-linked α-l-Fucp residue when the glycolipid is embedded in a phospholipid membrane. Our results not only contribute to a general understanding of protein-carbohydrate interactions on model membrane surfaces, particularly in the context of virus binding, but also suggest a possible role of human intestinal GSLs as potential receptors for norovirus uptake.

journal_name

ACS Chem Biol

journal_title

ACS chemical biology

authors

Nasir W,Frank M,Kunze A,Bally M,Parra F,Nyholm PG,Höök F,Larson G

doi

10.1021/acschembio.7b00152

subject

Has Abstract

pub_date

2017-05-19 00:00:00

pages

1288-1296

issue

5

eissn

1554-8929

issn

1554-8937

journal_volume

12

pub_type

杂志文章
  • Small molecule signaling in Caenorhabditis elegans.

    abstract::Whereas the C. elegans genome was sequenced many years ago, the role of small molecule signals in its biology is still poorly understood. A recent publication reports the identification of two steroidal signaling molecules that regulate C. elegans reproductive development and dauer diapause via the nuclear receptor DA...

    journal_title:ACS chemical biology

    pub_type: 杂志文章,评审

    doi:10.1021/cb600173t

    authors: Schroeder FC

    更新日期:2006-05-23 00:00:00

  • A Local Allosteric Network in Heat Shock Protein 70 (Hsp70) Links Inhibitor Binding to Enzyme Activity and Distal Protein-Protein Interactions.

    abstract::Allosteric inhibitors can be more difficult to optimize without an understanding of how their binding influences the conformational motions of the target. Here, we used an integrated computational and experimental approach to probe the molecular mechanism of an allosteric inhibitor of heat shock protein 70 (Hsp70). Th...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.8b00712

    authors: Rinaldi S,Assimon VA,Young ZT,Morra G,Shao H,Taylor IR,Gestwicki JE,Colombo G

    更新日期:2018-11-16 00:00:00

  • Transferrin Cycle and Clinical Roles of Citrate and Ascorbate in Improved Iron Metabolism.

    abstract::Fe(III) delivery from blood plasma to cells via the transferrin (Tf) cycle was studied intensively due to its crucial role in Fe homeostasis. Tf-cycle disruptions are linked to anemia, infections, immunodeficiency, and neurodegeneration. Biolayer interferometry (BLI) enabled direct kinetic and thermodynamic measuremen...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.8b01100

    authors: Levina A,Lay PA

    更新日期:2019-05-17 00:00:00

  • Small Molecule Phenotypic Screen Identifies Novel Regulators of LDLR Expression.

    abstract::Alzheimer's Disease (AD) is a progressive neurodegenerative disease and the most common cause of dementia. The current treatment options for AD are limited to ameliorating cognitive decline temporarily and not reversing or preventing the progression of dementia. Hence, more effective therapeutic strategies are needed ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00851

    authors: Krishnan N,Chen X,Donnelly-Roberts D,Mohler EG,Holtzman DM,Gopalakrishnan SM

    更新日期:2020-12-18 00:00:00

  • Stable RAGE-heparan sulfate complexes are essential for signal transduction.

    abstract::RAGE (Receptor for Advanced Glycation End-Products) has emerged as a major receptor that mediates vascular inflammation. Signaling through RAGE by damage-associated molecular pattern molecules often leads to uncontrolled inflammation that exacerbates the impact of the underlying disease. Oligomerization of RAGE is bel...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb4001553

    authors: Xu D,Young JH,Krahn JM,Song D,Corbett KD,Chazin WJ,Pedersen LC,Esko JD

    更新日期:2013-07-19 00:00:00

  • Mechanistic Insights into Taxadiene Epoxidation by Taxadiene-5α-Hydroxylase.

    abstract::The anticancer molecule taxol (Paclitaxel) stands as one of the most medically and economically important natural products. However, despite decades of extensive study, its biosynthesis remains poorly understood. Unpredictable behavior of the first oxygenation enzyme, taxadiene-5α-hydroxylase, which produces a range o...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00767

    authors: Edgar S,Zhou K,Qiao K,King JR,Simpson JH,Stephanopoulos G

    更新日期:2016-02-19 00:00:00

  • Insights into substrate and metal binding from the crystal structure of cyanobacterial aldehyde deformylating oxygenase with substrate bound.

    abstract::The nonheme diiron enzyme cyanobacterial aldehyde deformylating oxygenase, cADO, catalyzes the highly unusual deformylation of aliphatic aldehydes to alkanes and formate. We have determined crystal structures for the enzyme with a long-chain water-soluble aldehyde and medium-chain carboxylic acid bound to the active s...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb500343j

    authors: Buer BC,Paul B,Das D,Stuckey JA,Marsh EN

    更新日期:2014-11-21 00:00:00

  • Discovery of a nitric oxide responsive quorum sensing circuit in Vibrio harveyi.

    abstract::Bacteria use small molecules to assess the density and identity of nearby organisms and formulate a response. This process, called quorum sensing (QS), commonly regulates bioluminescence, biofilm formation, and virulence. Vibrio harveyi have three described QS circuits. Each involves the synthesis of a molecule that r...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb300215t

    authors: Henares BM,Higgins KE,Boon EM

    更新日期:2012-08-17 00:00:00

  • Ebselen: Mechanisms of Glutamate Dehydrogenase and Glutaminase Enzyme Inhibition.

    abstract::Ebselen modulates target proteins through redox reactions with selenocysteine/cysteine residues, or through binding to the zinc finger domains. However, a recent contradiction in ebselen inhibition of kidney type glutaminase (KGA) stimulated our interest in investigating its inhibition mechanism with glutamate dehydro...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00728

    authors: Yu Y,Jin Y,Zhou J,Ruan H,Zhao H,Lu S,Zhang Y,Li D,Ji X,Ruan BH

    更新日期:2017-12-15 00:00:00

  • Profiling heparin-chemokine interactions using synthetic tools.

    abstract::Glycosaminoglycans (GAGs), such as heparin or heparan sulfate, are required for the in vivo function of chemokines. Chemokines play a crucial role in the recruitment of leukocyte subsets to sites of inflammation and lymphocytes trafficking. GAG-chemokine interactions mediate cell migration and determine which leukocyt...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb700159m

    authors: de Paz JL,Moseman EA,Noti C,Polito L,von Andrian UH,Seeberger PH

    更新日期:2007-11-20 00:00:00

  • Replacing Mn(2+) with Co(2+) in human arginase i enhances cytotoxicity toward l-arginine auxotrophic cancer cell lines.

    abstract::Replacing the two Mn(2+) ions normally present in human Arginase I with Co(2+) resulted in a significantly lowered K(M) value without a concomitant reduction in k(cat). In addition, the pH dependence of the reaction was shifted from a pK(a) of 8.5 to a pK(a) of 7.5. The combination of these effects led to a 10-fold in...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb900267j

    authors: Stone EM,Glazer ES,Chantranupong L,Cherukuri P,Breece RM,Tierney DL,Curley SA,Iverson BL,Georgiou G

    更新日期:2010-03-19 00:00:00

  • Computational design of enone-binding proteins with catalytic activity for the Morita-Baylis-Hillman reaction.

    abstract::The Morita-Baylis-Hillman reaction forms a carbon-carbon bond between the α-carbon of a conjugated carbonyl compound and a carbon electrophile. The reaction mechanism involves Michael addition of a nucleophile catalyst at the carbonyl β-carbon, followed by bond formation with the electrophile and catalyst disassociati...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb3006227

    authors: Bjelic S,Nivón LG,Çelebi-Ölçüm N,Kiss G,Rosewall CF,Lovick HM,Ingalls EL,Gallaher JL,Seetharaman J,Lew S,Montelione GT,Hunt JF,Michael FE,Houk KN,Baker D

    更新日期:2013-04-19 00:00:00

  • Identification of a Novel Mycobacterial Arabinosyltransferase Activity Which Adds an Arabinosyl Residue to α-d-Mannosyl Residues.

    abstract::The arabinosyltransferases responsible for the biosynthesis of the arabinan domains of two abundant heteropolysaccharides of the cell envelope of all mycobacterial species, lipoarabinomannan and arabinogalactan, are validated drug targets. Using a cell envelope preparation from Mycobacterium smegmatis as the enzyme so...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00093

    authors: Angala SK,McNeil MR,Zou L,Liav A,Zhang J,Lowary TL,Jackson M

    更新日期:2016-06-17 00:00:00

  • Discovering the Genome-Wide Activity of CRISPR-Cas Nucleases.

    abstract::Originally discovered as part of an adaptive bacterial defense system against the invasion of foreign phages, programmable CRISPR-Cas nucleases have emerged as remarkable enzymes with transformative potential for both biological research and clinical application. CRISPR-Cas nucleases likely evolved in their natural co...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00847

    authors: Tsai SQ

    更新日期:2018-02-16 00:00:00

  • ANS binding reveals common features of cytotoxic amyloid species.

    abstract::Oligomeric assemblies formed from a variety of disease-associated peptides and proteins have been strongly associated with toxicity in many neurodegenerative conditions, such as Alzheimer's disease. The precise nature of the toxic agents, however, remains still to be established. We show that prefibrillar aggregates o...

    journal_title:ACS chemical biology

    pub_type: 信件

    doi:10.1021/cb1001203

    authors: Bolognesi B,Kumita JR,Barros TP,Esbjorner EK,Luheshi LM,Crowther DC,Wilson MR,Dobson CM,Favrin G,Yerbury JJ

    更新日期:2010-08-20 00:00:00

  • Probing enzymes late in the trypanosomal glycosylphosphatidylinositol biosynthetic pathway with synthetic glycosylphosphatidylinositol analogues.

    abstract::Glycosylphosphatidylinositol (GPI)-anchored proteins are abundant in the protozoan parasite Trypanosoma brucei, the causative agent of African sleeping sickness in humans and the related disease Nagana in cattle, and disruption of GPI biosynthesis is genetically and chemically validated as a drug target. Here, we exam...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb800143w

    authors: Urbaniak MD,Yashunsky DV,Crossman A,Nikolaev AV,Ferguson MA

    更新日期:2008-10-17 00:00:00

  • Discovery of Novel Antibiotics as Covalent Inhibitors of Fatty Acid Synthesis.

    abstract::The steady increase in the prevalence of multidrug-resistant Staphylococcus aureus has made the search for novel antibiotics to combat this clinically important pathogen an urgent matter. In an effort to discover antibacterials with new chemical structures and mechanisms, we performed a growth inhibition screen of a s...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.9b00982

    authors: Wang J,Ye X,Yang X,Cai Y,Wang S,Tang J,Sachdeva M,Qian Y,Hu W,Leeds JA,Yuan Y

    更新日期:2020-07-17 00:00:00

  • The Importance of Charge in Perturbing the Aromatic Glue Stabilizing the Protein-Protein Interface of Homodimeric tRNA-Guanine Transglycosylase.

    abstract::Bacterial tRNA-guanine transglycosylase (Tgt) is involved in the biosynthesis of the modified tRNA nucleoside queuosine present in the anticodon wobble position of tRNAs specific for aspartate, asparagine, histidine, and tyrosine. Inactivation of the tgt gene leads to decreased pathogenicity of Shigella bacteria. Ther...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00700

    authors: Nguyen A,Nguyen D,Phong Nguyen TX,Sebastiani M,Dörr S,Hernandez-Alba O,Debaene F,Cianférani S,Heine A,Klebe G,Reuter K

    更新日期:2020-11-20 00:00:00

  • Comparative chemogenomics to examine the mechanism of action of dna-targeted platinum-acridine anticancer agents.

    abstract::Platinum-based drugs have been used to successfully treat diverse cancers for several decades. Cisplatin, the original compound of this class, cross-links DNA, resulting in cell cycle arrest and cell death via apoptosis. Cisplatin is effective against several tumor types, yet it exhibits toxic side effects and tumors ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb300320d

    authors: Cheung-Ong K,Song KT,Ma Z,Shabtai D,Lee AY,Gallo D,Heisler LE,Brown GW,Bierbach U,Giaever G,Nislow C

    更新日期:2012-11-16 00:00:00

  • Structural Basis for the Stereochemical Control of Amine Installation in Nucleotide Sugar Aminotransferases.

    abstract::Sugar aminotransferases (SATs) are an important class of tailoring enzymes that catalyze the 5'-pyridoxal phosphate (PLP)-dependent stereo- and regiospecific installation of an amino group from an amino acid donor (typically L-Glu or L-Gln) to a corresponding ketosugar nucleotide acceptor. Herein we report the strateg...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00244

    authors: Wang F,Singh S,Xu W,Helmich KE,Miller MD,Cao H,Bingman CA,Thorson JS,Phillips GN Jr

    更新日期:2015-09-18 00:00:00

  • MARCKS-ED peptide as a curvature and lipid sensor.

    abstract::Membrane curvature and lipid composition regulates important biological processes within a cell. Currently, several proteins have been reported to sense and/or induce membrane curvatures, e.g., Synaptotagmin-1 and Amphiphysin. However, the large protein scaffold of these curvature sensors limits their applications in ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb300429e

    authors: Morton LA,Yang H,Saludes JP,Fiorini Z,Beninson L,Chapman ER,Fleshner M,Xue D,Yin H

    更新日期:2013-01-18 00:00:00

  • Covalent Inhibition of Ubc13 Affects Ubiquitin Signaling and Reveals Active Site Elements Important for Targeting.

    abstract::Ubc13 is an E2 ubiquitin conjugating enzyme that functions in nuclear DNA damage signaling and cytoplasmic NF-κB signaling. Here, we present the structures of complexes of Ubc13 with two inhibitors, NSC697923 and BAY 11-7082, which inhibit DNA damage and NF-κB signaling in human cells. NSC697923 and BAY 11-7082 both i...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00222

    authors: Hodge CD,Edwards RA,Markin CJ,McDonald D,Pulvino M,Huen MS,Zhao J,Spyracopoulos L,Hendzel MJ,Glover JN

    更新日期:2015-07-17 00:00:00

  • Phenotypic Screen Identifies JAK2 as a Major Regulator of FAT10 Expression.

    abstract::FAT10 is a ubiquitin-like protein suggested to target proteins for proteasomal degradation. It is highly upregulated upon pro-inflammatory cytokines, namely, TNFα, IFNγ, and IL6, and was found to be highly expressed in various epithelial cancers. Evidence suggests that FAT10 is involved in cancer development and may h...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.9b00667

    authors: Reznik N,Kozer N,Eisenberg-Lerner A,Barr H,Merbl Y,London N

    更新日期:2019-12-20 00:00:00

  • Selective tumor cell targeting using low-affinity, multivalent interactions.

    abstract::This report highlights the advantages of low-affinity, multivalent interactions to recognize one cell type over another. Our goal was to devise a strategy to mediate selective killing of tumor cells, which are often distinguished from normal cells by their higher levels of particular cell surface receptors. To test wh...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb6003788

    authors: Carlson CB,Mowery P,Owen RM,Dykhuizen EC,Kiessling LL

    更新日期:2007-02-20 00:00:00

  • Bisphenol A directly targets tubulin to disrupt spindle organization in embryonic and somatic cells.

    abstract::There is increasing concern that animal and human reproduction may be adversely affected by exposure to xenoestrogens that activate estrogen receptors. There is evidence that one such compound, Bisphenol A (BPA), also induces meiotic and mitotic aneuploidy, suggesting that these kinds of molecules may also have effect...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb700210u

    authors: George O,Bryant BK,Chinnasamy R,Corona C,Arterburn JB,Shuster CB

    更新日期:2008-03-20 00:00:00

  • Validating Signal Transducer and Activator of Transcription (STAT) Protein-Inhibitor Interactions Using Biochemical and Cellular Thermal Shift Assays.

    abstract::Signal transducer and activator of transcription (STAT) proteins have important biological functions; however, deregulation of STAT signaling is a driving force behind the onset and progression of inflammatory diseases and cancer. While their biological roles suggest that STAT proteins would be valuable targets for de...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00046

    authors: Attarha S,Reithmeier A,Busker S,Desroses M,Page BDG

    更新日期:2020-07-17 00:00:00

  • O-Demethylations catalyzed by Rieske nonheme iron monooxygenases involve the difficult oxidation of a saturated C-H bond.

    abstract::Dicamba monooxygenase (DMO) catalyzes the O-demethylation of dicamba (3,6-dichloro-2-methoxybenzoate) to produce 3,6-dichlorosalicylate and formaldehyde. Recent crystallographic studies suggest that DMO catalyzes the challenging oxidation of a saturated C-H bond within the methyl group of dicamba to form a hemiacetal ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb400154a

    authors: Jiang W,Wilson MA,Weeks DP

    更新日期:2013-08-16 00:00:00

  • Turn-on Fluorene Push-Pull Probes with High Brightness and Photostability for Visualizing Lipid Order in Biomembranes.

    abstract::The rational design of environmentally sensitive dyes with superior properties is critical for elucidating the fundamental biological processes and understanding the biophysical behavior of cell membranes. In this study, a novel group of fluorene-based push-pull probes was developed for imaging membrane lipids. The de...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00658

    authors: Shaya J,Collot M,Bénailly F,Mahmoud N,Mély Y,Michel BY,Klymchenko AS,Burger A

    更新日期:2017-12-15 00:00:00

  • De novo engineering of a human cystathionine-γ-lyase for systemic (L)-Methionine depletion cancer therapy.

    abstract::It has been known for nearly a half century that human tumors, including those derived from the nervous system such as glioblastomas, medulloblastoma, and neuroblastomas are much more sensitive than normal tissues to l-methionine (l-Met) starvation. More recently, systemic l-Met depletion by administration of Pseudomo...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb300335j

    authors: Stone E,Paley O,Hu J,Ekerdt B,Cheung NK,Georgiou G

    更新日期:2012-11-16 00:00:00

  • Dark Hydrazone Fluorescence Labeling Agents Enable Imaging of Cellular Aldehydic Load.

    abstract::Aldehydes are key intermediates in many cellular processes, from endogenous metabolic pathways like glycolysis to undesired exogenously induced processes such as lipid peroxidation and DNA interstrand cross-linking. Alkyl aldehydes are well documented to be cytotoxic, affecting the functions of DNA and protein, and th...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00269

    authors: Yuen LH,Saxena NS,Park HS,Weinberg K,Kool ET

    更新日期:2016-08-19 00:00:00