Comparative analyses of genetic trends and prospects for selection against hip and elbow dysplasia in 15 UK dog breeds.

Abstract:

BACKGROUND:Hip dysplasia remains one of the most serious hereditary diseases occurring in dogs despite long-standing evaluation schemes designed to aid selection for healthy joints. Many researchers have recommended the use of estimated breeding values (EBV) to improve the rate of genetic progress from selection against hip and elbow dysplasia (another common developmental orthopaedic disorder), but few have empirically quantified the benefits of their use. This study aimed to both determine recent genetic trends in hip and elbow dysplasia, and evaluate the potential improvements in response to selection that publication of EBV for such diseases would provide, across a wide range of pure-bred dog breeds. RESULTS:The genetic trend with respect to hip and elbow condition due to phenotypic selection had improved in all breeds, except the Siberian Husky. However, derived selection intensities are extremely weak, equivalent to excluding less than a maximum of 18% of the highest risk animals from breeding. EBV for hip and elbow score were predicted to be on average between 1.16 and 1.34 times more accurate than selection on individual or both parental phenotypes. Additionally, compared to the proportion of juvenile animals with both parental phenotypes, the proportion with EBV of a greater accuracy than selection on such phenotypes increased by up to 3-fold for hip score and up to 13-fold for elbow score. CONCLUSIONS:EBV are shown to be both more accurate and abundant than phenotype, providing more reliable information on the genetic risk of disease for a greater proportion of the population. Because the accuracy of selection is directly related to genetic progress, use of EBV can be expected to benefit selection for the improvement of canine health and welfare. Public availability of EBV for hip score for the fifteen breeds included in this study will provide information on the genetic risk of disease in nearly a third of all dogs annually registered by the UK Kennel Club, with in excess of a quarter having an EBV for elbow score as well.

journal_name

BMC Genet

journal_title

BMC genetics

authors

Lewis TW,Blott SC,Woolliams JA

doi

10.1186/1471-2156-14-16

subject

Has Abstract

pub_date

2013-03-02 00:00:00

pages

16

issn

1471-2156

pii

1471-2156-14-16

journal_volume

14

pub_type

杂志文章
  • Association of dopaminergic pathway gene polymorphisms with chronic renal insufficiency among Asian Indians with type-2 diabetes.

    abstract:BACKGROUND:Genetic markers conferring susceptibility to diabetes specific renal disease remains to be identified for early prediction and development of effective drugs and therapies. Inconsistent results obtained from analysis of genes from classical pathways generate need for examination of unconventional genetic mar...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-9-26

    authors: Prasad P,Kumar KM,Ammini AC,Gupta A,Gupta R,Thelma BK

    更新日期:2008-03-22 00:00:00

  • Including endophenotypes as covariates in variance component heritability and linkage analysis.

    abstract::The purpose of these analyses was to determine if incorporating or adjusting for covariates in genetic analyses helped or hindered in genetic analyses, specifically heritability and linkage analyses. To study this question, two types of covariate models were used in the simulated Genetic Analysis Workshop 14 dataset i...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-6-S1-S49

    authors: Bailey JN

    更新日期:2005-12-30 00:00:00

  • High density linkage disequilibrium maps of chromosome 14 in Holstein and Angus cattle.

    abstract:BACKGROUND:Linkage disequilibrium (LD) maps can provide a wealth of information on specific marker-phenotype relationships, especially in areas of the genome where positional candidate genes with similar functions are located. A recently published high resolution radiation hybrid map of bovine chromosome 14 (BTA14) tog...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-9-45

    authors: Marques E,Schnabel RD,Stothard P,Kolbehdari D,Wang Z,Taylor JF,Moore SS

    更新日期:2008-07-08 00:00:00

  • Truncating CHRNG mutations associated with interfamilial variability of the severity of the Escobar variant of multiple pterygium syndrome.

    abstract:BACKGROUND:In humans, muscle-specific nicotinergic acetylcholine receptor (AChR) is a transmembrane protein with five different subunits, coded by CHRNA1, CHRNB, CHRND and CHRNG/CHRNE. The gamma subunit of AChR encoded by CHRNG is expressed during early foetal development, whereas in the adult, the γ subunit is replace...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-016-0382-5

    authors: Kariminejad A,Almadani N,Khoshaeen A,Olsson B,Moslemi AR,Tajsharghi H

    更新日期:2016-05-31 00:00:00

  • Accuracy of genomic prediction for growth and carcass traits in Chinese triple-yellow chickens.

    abstract:BACKGROUND:Growth and carcass traits are very important traits for broiler chickens. However, carcass traits can only be measured postmortem. Genomic selection may be a powerful tool for such traits because of its accurate prediction of breeding values of animals without own phenotypic information. This study investiga...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-014-0110-y

    authors: Liu T,Qu H,Luo C,Shu D,Wang J,Lund MS,Su G

    更新日期:2014-10-15 00:00:00

  • Comparative genomic analysis of Atlantic salmon, Salmo salar, from Europe and North America.

    abstract:BACKGROUND:Several lines of evidence including allozyme analysis, restriction digest patterns and sequencing of mtDNA as well as mini- and micro-satellite allele frequencies indicate that Atlantic salmon (Salmo salar) from North America and Europe are genetically distinct. These observations are supported by karyotype ...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-11-105

    authors: Lubieniecki KP,Jones SL,Davidson EA,Park J,Koop BF,Walker S,Davidson WS

    更新日期:2010-11-23 00:00:00

  • MicroRNA-146a rs2910164 is associated with severe preeclampsia in Black South African women on HAART.

    abstract:BACKGROUND:South African (SA) Black women have a high prevalence of preeclampsia and HIV, both conditions associated with increased inflammation. miR-146a is an inflammatory-associated miR and a common single nucleotide polymorphism (rs2910164) has been associated with several disease conditions. To date, this SNP has ...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-016-0469-z

    authors: Maharaj NR,Ramkaran P,Pillay S,Chuturgoon AA

    更新日期:2017-01-19 00:00:00

  • Schrodinger's scat: a critical review of the currently available tiger (Panthera Tigris) and leopard (Panthera pardus) specific primers in India, and a novel leopard specific primer.

    abstract:BACKGROUND:Non-invasive sampling has opened avenues for the genetic study of elusive species, which has contributed significantly to their conservation. Where field based identity of non-invasive sample is ambiguous (e.g. carnivore scats), it is essential to establish identity of the species through molecular approache...

    journal_title:BMC genetics

    pub_type: 杂志文章,评审

    doi:10.1186/s12863-016-0344-y

    authors: Maroju PA,Yadav S,Kolipakam V,Singh S,Qureshi Q,Jhala Y

    更新日期:2016-02-09 00:00:00

  • Wild barley introgression lines revealed novel QTL alleles for root and related shoot traits in the cultivated barley (Hordeum vulgare L.).

    abstract:BACKGROUND:Root is the prime organ that sucks water and nutrients from deep layer of soil. Wild barley diversity exhibits remarkable variation in root system architecture that seems crucial in its adaptation to abiotic stresses like drought. In the present study, we performed quantitative trait locus (QTL) mapping of r...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-014-0107-6

    authors: Naz AA,Arifuzzaman M,Muzammil S,Pillen K,Léon J

    更新日期:2014-10-07 00:00:00

  • Reassessment of the function of somatolactin alpha in lipid metabolism using medaka mutant and transgenic strains.

    abstract:BACKGROUND:Somatolactin alpha (SLa) is a fish-specific peptide hormone secreted from the pituitary. In medaka, SLa functions to darken the skin color and lack of SLa makes it pale. Transcription of SLa is enhanced or suppressed when fish are kept in dark or bright conditions, respectively, indicating SLa's important ro...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-13-64

    authors: Sasano Y,Yoshimura A,Fukamachi S

    更新日期:2012-07-24 00:00:00

  • The Prader-Willi syndrome murine imprinting center is not involved in the spatio-temporal transcriptional regulation of the Necdin gene.

    abstract:BACKGROUND:The human Prader-Willi syndrome (PWS) domain and its mouse orthologue include a cluster of paternally expressed genes which imprinted expression is co-ordinately regulated by an imprinting center (IC) closely associated to the Snurf-Snrpn gene. Besides their co-regulated imprinted expression, two observation...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-6-1

    authors: Watrin F,Le Meur E,Roeckel N,Ripoche MA,Dandolo L,Muscatelli F

    更新日期:2005-01-05 00:00:00

  • Identification and characterization of four Drosophila suzukii cellularization genes and their promoters.

    abstract:BACKGROUND:The spotted-wing Drosophila (Drosophila suzukii) is a widespread invasive pest that causes severe economic damage to fruit crops. The early development of D. suzukii is similar to that of other Drosophilids, but the roles of individual genes must be confirmed experimentally. Cellularization genes coordinate ...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-020-00939-y

    authors: Yan Y,Jaffri SA,Schwirz J,Stein C,Schetelig MF

    更新日期:2020-12-18 00:00:00

  • Diagnosis of alcoholism based on neural network analysis of phenotypic risk factors.

    abstract:BACKGROUND:Alcoholism is a serious public health problem. It has both genetic and environmental causes. In an effort to gain understanding of the underlying genetic susceptibility to alcoholism, a long-term study has been undertaken. The Collaborative Study on the Genetics of Alcoholism (COGA) provides a rich source of...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-6-S1-S131

    authors: Falk CT

    更新日期:2005-12-30 00:00:00

  • Imputation methods for missing data for polygenic models.

    abstract::Methods to handle missing data have been an area of statistical research for many years. Little has been done within the context of pedigree analysis. In this paper we present two methods for imputing missing data for polygenic models using family data. The imputation schemes take into account familial relationships a...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-4-S1-S42

    authors: Fridley B,Rabe K,de Andrade M

    更新日期:2003-12-31 00:00:00

  • Association studies including genotype by environment interactions: prospects and limits.

    abstract:BACKGROUND:Association mapping studies offer great promise to identify polymorphisms associated with phenotypes and for understanding the genetic basis of quantitative trait variation. To date, almost all association mapping studies based on structured plant populations examined the main effects of genetic factors on t...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-15-3

    authors: Saïdou AA,Thuillet AC,Couderc M,Mariac C,Vigouroux Y

    更新日期:2014-01-06 00:00:00

  • Evaluation of a target region capture sequencing platform using monogenic diabetes as a study-model.

    abstract:BACKGROUND:Monogenic diabetes is a genetic disease often caused by mutations in genes involved in beta-cell function. Correct sub-categorization of the disease is a prerequisite for appropriate treatment and genetic counseling. Target-region capture sequencing is a combination of genomic region enrichment and next gene...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-15-13

    authors: Gao R,Liu Y,Gjesing AP,Hollensted M,Wan X,He S,Pedersen O,Yi X,Wang J,Hansen T

    更新日期:2014-01-29 00:00:00

  • Evidence for paternal DNA transmission to gynogenetic grass carp.

    abstract:BACKGROUND:Grass carp (Ctenopharyngodon idellus, GC), as the highest-output fish in China, is economically important. The production of gynogenetic grass carp (GGC) will provide important germplasm resource for producing improved GC. At present, knowledge regarding the heterologous sperm DNA in gynogenetic offspring is...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-018-0712-x

    authors: Mao Z,Fu Y,Wang Y,Wang S,Zhang M,Gao X,Luo K,Qin Q,Zhang C,Tao M,Yao Z,Liu S

    更新日期:2019-01-07 00:00:00

  • Sucrose non-ferment 1 related protein kinase 2 (SnRK2) genes could mediate the stress responses in potato (Solanum tuberosum L.).

    abstract:BACKGROUND:The SnRKs (sucrose non-fermenting 1 related protein kinase) are a gene family coding for Ser/Thr protein kinases and play important roles in linking the tolerance and metabolic responses of plants to abiotic stresses. To date, no genome-wide characterization of the sucrose non-ferment 1 related protein kinas...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-017-0506-6

    authors: Bai J,Mao J,Yang H,Khan A,Fan A,Liu S,Zhang J,Wang D,Gao H,Zhang J

    更新日期:2017-05-15 00:00:00

  • Exome sequencing in one family with gastric- and rectal cancer.

    abstract:BACKGROUND:Heritable factors are well known to increase the risk of cancer in families. Known susceptibility genes account for a small proportion of all colorectal cancer cases. The aim of this study was to identify the genetic background in a family suggested to segregate a dominant cancer syndrome with a high risk of...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-016-0351-z

    authors: Thutkawkorapin J,Picelli S,Kontham V,Liu T,Nilsson D,Lindblom A

    更新日期:2016-02-13 00:00:00

  • LD2SNPing: linkage disequilibrium plotter and RFLP enzyme mining for tag SNPs.

    abstract:BACKGROUND:Linkage disequilibrium (LD) mapping is commonly used to evaluate markers for genome-wide association studies. Most types of LD software focus strictly on LD analysis and visualization, but lack supporting services for genotyping. RESULTS:We developed a freeware called LD2SNPing, which provides a complete pa...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-10-26

    authors: Chang HW,Chuang LY,Chang YJ,Cheng YH,Hung YC,Chen HC,Yang CH

    更新日期:2009-06-06 00:00:00

  • Linkage mapping of total cholesterol level in a young cohort via nonparametric regression.

    abstract:BACKGROUND:Compared to model-based approaches, nonparametric methods for quantitative trait loci mapping are more robust to deviations in distributional assumptions. In this study, we modify a nonparametric regression method and the "contrast function"- based regression method to analyze total cholesterol level in the ...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-4-S1-S92

    authors: Ghosh S,Bertelsen S,Reich T

    更新日期:2003-12-31 00:00:00

  • A power study of bivariate LOD score analysis of a complex trait and fear/discomfort with strangers.

    abstract::Complex diseases are often reported along with disease-related traits (DRT). Sometimes investigators consider both disease and DRT phenotypes separately and sometimes they consider individuals as affected if they have either the disease or the DRT, or both. We propose instead to consider the joint distribution of the ...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-6-S1-S113

    authors: Ji F,Lee D,Mendell NR

    更新日期:2005-12-30 00:00:00

  • Probability genotype imputation method and integrated weighted lasso for QTL identification.

    abstract:BACKGROUND:Many QTL studies have two common features: (1) often there is missing marker information, (2) among many markers involved in the biological process only a few are causal. In statistics, the second issue falls under the headings "sparsity" and "causal inference". The goal of this work is to develop a two-step...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-14-125

    authors: Demetrashvili N,Van den Heuvel ER,Wit EC

    更新日期:2013-12-30 00:00:00

  • Combined small RNA and degradome sequencing to identify miRNAs and their targets in response to drought in foxtail millet.

    abstract:BACKGROUND:Foxtail millet (Setaria italica) is a diploid C4 panicoid species. Because of its prominent drought resistance, small genome size, self-pollination, and short life cycle, foxtail millet has become an ideal model system for studying drought tolerance of crops. MicroRNAs (miRNAs) are endogenous, small RNAs tha...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-016-0364-7

    authors: Wang Y,Li L,Tang S,Liu J,Zhang H,Zhi H,Jia G,Diao X

    更新日期:2016-04-12 00:00:00

  • Molecular basis of a new ovine model for human 3M syndrome-2.

    abstract:BACKGROUND:Brachygnathia, cardiomegaly and renal hypoplasia syndrome (BCRHS, OMIA 001595-9940 ) is a previously reported recessively inherited disorder in Australian Poll Merino/Merino sheep. Affected lambs are stillborn with various congenital defects as reflected in the name of the disease, as well as short stature, ...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-020-00913-8

    authors: Woolley SA,Hayes SE,Shariflou MR,Nicholas FW,Willet CE,O'Rourke BA,Tammen I

    更新日期:2020-09-15 00:00:00

  • Identifying and exploiting gene-pathway interactions from RNA-seq data for binary phenotype.

    abstract:BACKGROUND:RNA sequencing (RNA-seq) technology has identified multiple differentially expressed (DE) genes associated to complex disease, however, these genes only explain a modest part of variance. Omnigenic model assumes that disease may be driven by genes with indirect relevance to disease and be propagated by funct...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-019-0739-7

    authors: Shao F,Wang Y,Zhao Y,Yang S

    更新日期:2019-03-19 00:00:00

  • Fine-mapping using the weighted average method for a case-control study.

    abstract::We present a new method for fine-mapping a disease susceptibility locus using a case-control design. The new method, termed the weighted average (WA) statistic, averages the Cochran-Armitage (CA) trend test statistic and the difference between the Hardy-Weinberg disequilibrium test statistic for cases and controls (th...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-6-S1-S67

    authors: Song K,Orloff MS,Lu Q,Elston RC

    更新日期:2005-12-30 00:00:00

  • Genome scan linkage analysis comparing microsatellites and single-nucleotide polymorphisms markers for two measures of alcoholism in chromosomes 1, 4, and 7.

    abstract:BACKGROUND:We analyzed 143 pedigrees (364 nuclear families) in the Collaborative Study on the Genetics of Alcoholism (COGA) data provided to the participants in the Genetic Analysis Workshop 14 (GAW14) with the goal of comparing results obtained from genome linkage analysis using microsatellite and with results obtaine...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-6-S1-S4

    authors: Chen G,Adeyemo A,Zhou J,Yuan A,Chen Y,Rotimi C

    更新日期:2005-12-30 00:00:00

  • Three novel mutations in KIF21A highlight the importance of the third coiled-coil stalk domain in the etiology of CFEOM1.

    abstract:BACKGROUND:Congenital fibrosis of the extraocular muscles types 1 and 3 (CFEOM1/CFEOM3) are autosomal dominant strabismus disorders that appear to result from maldevelopment of ocular nuclei and nerves. We previously reported that most individuals with CFEOM1 and rare individuals with CFEOM3 harbor heterozygous mutatio...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-8-26

    authors: Chan WM,Andrews C,Dragan L,Fredrick D,Armstrong L,Lyons C,Geraghty MT,Hunter DG,Yazdani A,Traboulsi EI,Pott JW,Gutowski NJ,Ellard S,Young E,Hanisch F,Koc F,Schnall B,Engle EC

    更新日期:2007-05-18 00:00:00

  • Genome-wide and local pattern of linkage disequilibrium and persistence of phase for 3 Danish pig breeds.

    abstract:BACKGROUND:The extent of linkage disequilibrium (LD) is of critical importance for genomic selection and marker assisted selection. The primary purpose of this study is to examine patterns of LD in three Danish pig breeds (Duroc, Landrace and Yorkshire); we also examine patterns of persistence of phase between the bree...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-14-115

    authors: Wang L,Sørensen P,Janss L,Ostersen T,Edwards D

    更新日期:2013-12-05 00:00:00