Identification and characterization of four Drosophila suzukii cellularization genes and their promoters.

Abstract:

BACKGROUND:The spotted-wing Drosophila (Drosophila suzukii) is a widespread invasive pest that causes severe economic damage to fruit crops. The early development of D. suzukii is similar to that of other Drosophilids, but the roles of individual genes must be confirmed experimentally. Cellularization genes coordinate the onset of cell division as soon as the invagination of membranes starts around the nuclei in the syncytial blastoderm. The promoters of these genes have been used in genetic pest-control systems to express transgenes that confer embryonic lethality. Such systems could be helpful in sterile insect technique applications to ensure that sterility (bi-sex embryonic lethality) or sexing (female-specific embryonic lethality) can be achieved during mass rearing. The activity of cellularization gene promoters during embryogenesis controls the timing and dose of the lethal gene product. RESULTS:Here, we report the isolation of the D. suzukii cellularization genes nullo, serendipity-α, bottleneck and slow-as-molasses from a laboratory strain. Conserved motifs were identified by comparing the encoded proteins with orthologs from other Drosophilids. Expression profiling confirmed that all four are zygotic genes that are strongly expressed at the early blastoderm stage. The 5' flanking regions from these cellularization genes were isolated, incorporated into piggyBac vectors and compared in vitro for the promoter activities. The Dsnullo promoter showed the highest activity in the cell culture assays using D. melanogaster S2 cells. CONCLUSIONS:The similarities in the gene coding and 5' flanking sequence as well as in the expression pattern of the four cellularization genes between D. melanogaster and D. suzukii, suggest that conserved functions may be involved in both species. The high expression level at the early blastoderm stage of the four cellularization genes were confirmed, thus their promoters can be considered in embryonic lethality systems. While the Dsnullo promoter could be a suitable candidate, all reported promoters here are subject to further in vivo analyses before constructing potential pest control systems.

journal_name

BMC Genet

journal_title

BMC genetics

authors

Yan Y,Jaffri SA,Schwirz J,Stein C,Schetelig MF

doi

10.1186/s12863-020-00939-y

subject

Has Abstract

pub_date

2020-12-18 00:00:00

pages

146

issue

Suppl 2

issn

1471-2156

pii

10.1186/s12863-020-00939-y

journal_volume

21

pub_type

杂志文章
  • Accuracy of genomic prediction for growth and carcass traits in Chinese triple-yellow chickens.

    abstract:BACKGROUND:Growth and carcass traits are very important traits for broiler chickens. However, carcass traits can only be measured postmortem. Genomic selection may be a powerful tool for such traits because of its accurate prediction of breeding values of animals without own phenotypic information. This study investiga...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-014-0110-y

    authors: Liu T,Qu H,Luo C,Shu D,Wang J,Lund MS,Su G

    更新日期:2014-10-15 00:00:00

  • Worldwide distribution of NAT2 diversity: implications for NAT2 evolutionary history.

    abstract:BACKGROUND:The N-acetyltransferase 2 (NAT2) gene plays a crucial role in the metabolism of many drugs and xenobiotics. As it represents a likely target of population-specific selection pressures, we fully sequenced the NAT2 coding region in 97 Mandenka individuals from Senegal, and compared these sequences to extant da...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-9-21

    authors: Sabbagh A,Langaney A,Darlu P,Gérard N,Krishnamoorthy R,Poloni ES

    更新日期:2008-02-27 00:00:00

  • Genome-wide characterization of copy number variations in the host genome in genetic resistance to Marek's disease using next generation sequencing.

    abstract:BACKGROUND:Marek's disease (MD) is a highly neoplastic disease primarily affecting chickens, and remains as a chronic infectious disease that threatens the poultry industry. Copy number variation (CNV) has been examined in many species and is recognized as a major source of genetic variation that directly contributes t...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-020-00884-w

    authors: Bai H,He Y,Ding Y,Chu Q,Lian L,Heifetz EM,Yang N,Cheng HH,Zhang H,Chen J,Song J

    更新日期:2020-07-16 00:00:00

  • Tissue expression profiles unveil the gene interaction of hepatopancreas, eyestalk, and ovary in the precocious female Chinese mitten crab, Eriocheir sinensis.

    abstract:BACKGROUND:Sexual precocity is a common biological phenomenon in animal species. A large number of precocity individuals were identified in Chinese mitten crab Eriocheir sinensis, which caused huge economic loss annually. However, the underlying genetic basis of precocity in E. sinensis remains unclear to date. RESULT...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-019-0716-1

    authors: Chen X,Wang J,Hou X,Yue W,Huang S,Wang C

    更新日期:2019-01-25 00:00:00

  • Association of ADIPOQ gene with type 2 diabetes and related phenotypes in African American men and women: the Jackson Heart Study.

    abstract:BACKGROUND:African Americans experience disproportionately higher prevalence of type 2 diabetes and related risk factors. Little research has been done on the association of ADIPOQ gene on type 2 diabetes, plasma adiponectin, blood glucose, HOMA-IR and body mass index (BMI) in African Americans. The objective of our re...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-015-0319-4

    authors: Davis SK,Xu R,Gebreab SY,Riestra P,Gaye A,Khan RJ,Wilson JG,Bidulescu A

    更新日期:2015-12-23 00:00:00

  • Puccinia triticina pathotypes THTT and THTS display complex transcript profiles on wheat cultivar Thatcher.

    abstract:BACKGROUND:Wheat leaf rust is an important disease worldwide. Understanding the pathogenic molecular mechanism of Puccinia triticina Eriks. (Pt) and the inconstant toxic region is critical for managing the disease. The present study aimed to analyze the pathogenic divergence between Pt isolates. RESULTS:Total RNA was ...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-020-00851-5

    authors: Wei J,Cui L,Zhang N,Du D,Meng Q,Yan H,Liu D,Yang W

    更新日期:2020-04-28 00:00:00

  • Insertion-deletion polymorphisms (indels) as genetic markers in natural populations.

    abstract:BACKGROUND:We introduce the use of short insertion-deletion polymorphisms (indels) for genetic analysis of natural populations. RESULTS:Sequence reads from light shot-gun sequencing efforts of different dog breeds were aligned to the dog genome reference sequence and gaps corresponding to indels were identified. One h...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-9-8

    authors: Väli U,Brandström M,Johansson M,Ellegren H

    更新日期:2008-01-22 00:00:00

  • Wild barley introgression lines revealed novel QTL alleles for root and related shoot traits in the cultivated barley (Hordeum vulgare L.).

    abstract:BACKGROUND:Root is the prime organ that sucks water and nutrients from deep layer of soil. Wild barley diversity exhibits remarkable variation in root system architecture that seems crucial in its adaptation to abiotic stresses like drought. In the present study, we performed quantitative trait locus (QTL) mapping of r...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-014-0107-6

    authors: Naz AA,Arifuzzaman M,Muzammil S,Pillen K,Léon J

    更新日期:2014-10-07 00:00:00

  • Regulatory networks in retinal ischemia-reperfusion injury.

    abstract:BACKGROUND:Retinal function is ordered by interactions between transcriptional and posttranscriptional regulators at the molecular level. These regulators include transcription factors (TFs) and posttranscriptional factors such as microRNAs (miRs). Some studies propose that miRs predominantly target the TFs rather than...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-015-0201-4

    authors: Andreeva K,Soliman MM,Cooper NG

    更新日期:2015-04-24 00:00:00

  • Bayesian shrinkage mapping of quantitative trait loci in variance component models.

    abstract:BACKGROUND:In this article, I propose a model-selection-free method to map multiple quantitative trait loci (QTL) in variance component model, which is useful in outbred populations. The new method can estimate the variance of zero-effect QTL infinitely to zero, but nearly unbiased for non-zero-effect QTL. It is analog...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-11-30

    authors: Fang M

    更新日期:2010-04-29 00:00:00

  • Transcriptome sequencing of transgenic poplar (Populus × euramericana 'Guariento') expressing multiple resistance genes.

    abstract:BACKGROUND:Transgenic poplar (Populus × euramericana 'Guariento') plants harboring five exogenous, stress-related genes exhibit increased tolerance to multiple stresses including drought, salt, waterlogging, and insect feeding, but the complex mechanisms underlying stress tolerance in these plants have not been elucida...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-15-S1-S7

    authors: Zhang W,Chu Y,Ding C,Zhang B,Huang Q,Hu Z,Huang R,Tian Y,Su X

    更新日期:2014-01-01 00:00:00

  • LD2SNPing: linkage disequilibrium plotter and RFLP enzyme mining for tag SNPs.

    abstract:BACKGROUND:Linkage disequilibrium (LD) mapping is commonly used to evaluate markers for genome-wide association studies. Most types of LD software focus strictly on LD analysis and visualization, but lack supporting services for genotyping. RESULTS:We developed a freeware called LD2SNPing, which provides a complete pa...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-10-26

    authors: Chang HW,Chuang LY,Chang YJ,Cheng YH,Hung YC,Chen HC,Yang CH

    更新日期:2009-06-06 00:00:00

  • The use of the SLC16A1 gene as a potential marker to predict race performance in Arabian horses.

    abstract:BACKGROUND:Arabian horses are commonly believed to be one of the oldest and the most popular horse breeds in the world, characterized by favourable stamina traits and exercise phenotypes. During intensive training, the rates of lactate production and utilization are critical to avoid muscle fatigue and a decrease in ex...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-019-0774-4

    authors: Ropka-Molik K,Stefaniuk-Szmukier M,Szmatoła T,Piórkowska K,Bugno-Poniewierska M

    更新日期:2019-09-11 00:00:00

  • A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines.

    abstract:BACKGROUND:ENU-mutagenesis is a powerful technique to identify genes regulating mammalian development. To functionally annotate the distal region of mouse chromosome 4, we performed an ENU-mutagenesis screen using a balancer chromosome targeted to this region of the genome. RESULTS:We isolated 11 lethal lines that map...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-10-12

    authors: Boles MK,Wilkinson BM,Maxwell A,Lai L,Mills AA,Nishijima I,Salinger AP,Moskowitz I,Hirschi KK,Liu B,Bradley A,Justice MJ

    更新日期:2009-03-06 00:00:00

  • Identifying and exploiting gene-pathway interactions from RNA-seq data for binary phenotype.

    abstract:BACKGROUND:RNA sequencing (RNA-seq) technology has identified multiple differentially expressed (DE) genes associated to complex disease, however, these genes only explain a modest part of variance. Omnigenic model assumes that disease may be driven by genes with indirect relevance to disease and be propagated by funct...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-019-0739-7

    authors: Shao F,Wang Y,Zhao Y,Yang S

    更新日期:2019-03-19 00:00:00

  • Genome scan linkage analysis comparing microsatellites and single-nucleotide polymorphisms markers for two measures of alcoholism in chromosomes 1, 4, and 7.

    abstract:BACKGROUND:We analyzed 143 pedigrees (364 nuclear families) in the Collaborative Study on the Genetics of Alcoholism (COGA) data provided to the participants in the Genetic Analysis Workshop 14 (GAW14) with the goal of comparing results obtained from genome linkage analysis using microsatellite and with results obtaine...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-6-S1-S4

    authors: Chen G,Adeyemo A,Zhou J,Yuan A,Chen Y,Rotimi C

    更新日期:2005-12-30 00:00:00

  • Quantitative trait loci for variation in immune response to a Foot-and-Mouth Disease virus peptide.

    abstract:BACKGROUND:Infectious disease of livestock continues to be a cause of substantial economic loss and has adverse welfare consequences in both the developing and developed world. New solutions to control disease are needed and research focused on the genetic loci determining variation in immune-related traits has the pot...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-11-107

    authors: Leach RJ,Craigmile SC,Knott SA,Williams JL,Glass EJ

    更新日期:2010-12-07 00:00:00

  • PRNP promoter polymorphisms are associated with BSE susceptibility in Swiss and German cattle.

    abstract:BACKGROUND:Non-synonymous polymorphisms within the prion protein gene (PRNP) influence the susceptibility and incubation time for transmissible spongiform encephalopathies (TSE) in some species such as sheep and humans. In cattle, none of the known polymorphisms within the PRNP coding region has a major influence on su...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-8-15

    authors: Haase B,Doherr MG,Seuberlich T,Drögemüller C,Dolf G,Nicken P,Schiebel K,Ziegler U,Groschup MH,Zurbriggen A,Leeb T

    更新日期:2007-04-16 00:00:00

  • Leveraging local ancestry to detect gene-gene interactions in genome-wide data.

    abstract:BACKGROUND:Although genome-wide association studies have successfully identified thousands of variants associated to complex traits, these variants only explain a small amount of the entire heritability of the trait. Gene-gene interactions have been proposed as a source to explain a significant percentage of the missin...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-015-0283-z

    authors: Aschard H,Gusev A,Brown R,Pasaniuc B

    更新日期:2015-10-24 00:00:00

  • Consomic mouse strain selection based on effect size measurement, statistical significance testing and integrated behavioral z-scoring: focus on anxiety-related behavior and locomotion.

    abstract:BACKGROUND:Selecting chromosome substitution strains (CSSs, also called consomic strains/lines) used in the search for quantitative trait loci (QTLs) consistently requires the identification of the respective phenotypic trait of interest and is simply based on a significant difference between a consomic and host strain...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-016-0411-4

    authors: Labots M,Laarakker MC,Ohl F,van Lith HA

    更新日期:2016-06-29 00:00:00

  • Mutation screen and association studies in the diacylglycerol O-acyltransferase homolog 2 gene (DGAT2), a positional candidate gene for early onset obesity on chromosome 11q13.

    abstract:BACKGROUND:DGAT2 is a promising candidate gene for obesity because of its function as a key enzyme in fat metabolism and because of its localization on chromosome 11q13, a linkage region for extreme early onset obesity detected in our sample. We performed a mutation screen in 93 extremely obese children and adolescents...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-8-17

    authors: Friedel S,Reichwald K,Scherag A,Brumm H,Wermter AK,Fries HR,Koberwitz K,Wabitsch M,Meitinger T,Platzer M,Biebermann H,Hinney A,Hebebrand J

    更新日期:2007-05-03 00:00:00

  • Cytoplasm affects grain weight and filled-grain ratio in indica rice.

    abstract:BACKGROUND:Cytoplasmic effects on agronomic traits--involving cytoplasmic and nuclear genomes of either different species or different cultivars--are well documented in wheat but have seldom been demonstrated in rice (Oryza sativa L.). To detect cytoplasmic effects, we introgressed the nuclear genomes of three indica c...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-12-53

    authors: Tao D,Xu P,Zhou J,Deng X,Li J,Deng W,Yang J,Yang G,Li Q,Hu F

    更新日期:2011-06-01 00:00:00

  • A 31-bp indel in the 5' UTR region of GNB1L is significantly associated with chicken body weight and carcass traits.

    abstract:BACKGROUND:G-protein subunit beta 1 like (GNB1L) encodes a G-protein beta-subunit-like polypeptide. Chicken GNB1L is upregulated in the breast muscle of high feed efficiency chickens, and its expression is 1.52-fold that in low feed efficiency chickens. However, no report has described the effects of GNB1L indels on th...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-020-00900-z

    authors: Ren T,Yang Y,Lin W,Li W,Xian M,Fu R,Zhang Z,Mo G,Luo W,Zhang X

    更新日期:2020-08-26 00:00:00

  • A genetic association analysis of cognitive ability and cognitive ageing using 325 markers for 109 genes associated with oxidative stress or cognition.

    abstract:BACKGROUND:Non-pathological cognitive ageing is a distressing condition affecting an increasing number of people in our 'ageing society'. Oxidative stress is hypothesised to have a major role in cellular ageing, including brain ageing. RESULTS:Associations between cognitive ageing and 325 single nucleotide polymorphis...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-8-43

    authors: Harris SE,Fox H,Wright AF,Hayward C,Starr JM,Whalley LJ,Deary IJ

    更新日期:2007-07-02 00:00:00

  • Genomic and expression analysis of multiple Sry loci from a single Rattus norvegicus Y chromosome.

    abstract:BACKGROUND:Sry is a gene known to be essential for testis determination but is also transcribed in adult male tissues. The laboratory rat, Rattus norvegicus, has multiple Y chromosome copies of Sry while most mammals have only a single copy. DNA sequence comparisons with other rodents with multiple Sry copies are incon...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-8-11

    authors: Turner ME,Martin C,Martins AS,Dunmire J,Farkas J,Ely DL,Milsted A

    更新日期:2007-04-04 00:00:00

  • The challenge for genetic epidemiologists: how to analyze large numbers of SNPs in relation to complex diseases.

    abstract::Genetic epidemiologists have taken the challenge to identify genetic polymorphisms involved in the development of diseases. Many have collected data on large numbers of genetic markers but are not familiar with available methods to assess their association with complex diseases. Statistical methods have been developed...

    journal_title:BMC genetics

    pub_type: 社论

    doi:10.1186/1471-2156-7-23

    authors: Heidema AG,Boer JM,Nagelkerke N,Mariman EC,van der A DL,Feskens EJ

    更新日期:2006-04-21 00:00:00

  • Freeze-thaw Caenorhabditis elegans freeze-thaw stress response is regulated by the insulin/IGF-1 receptor daf-2.

    abstract:BACKGROUND:Adaption to cold temperatures, especially those below freezing, is essential for animal survival in cold environments. Freezing is also used for many medical, scientific, and industrial purposes. Natural freezing survival in animals has been extensively studied. However, the underlying mechanisms remain uncl...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-015-0298-5

    authors: Hu JP,Xu XY,Huang LY,Wang LS,Fang NY

    更新日期:2015-12-03 00:00:00

  • Population study of 1311 C/T polymorphism of Glucose 6 Phosphate Dehydrogenase gene in Pakistan - an analysis of 715 X-chromosomes.

    abstract:BACKGROUND:Nucleotide 1311 polymorphism at exon 11 of G6PD gene is widely prevalent in various populations of the world. The aim of the study was to evaluate 1311 polymorphism in subjects carrying G6PD Mediterranean gene and in general population living in Pakistan. RESULTS:Patients already known to be G6PD deficient ...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/1471-2156-10-41

    authors: Moiz B,Nasir A,Moatter T,Naqvi ZA,Khurshid M

    更新日期:2009-07-30 00:00:00

  • Recombination of the porcine X chromosome: a high density linkage map.

    abstract:BACKGROUND:Linkage maps are essential tools for the study of several topics in genome biology. High density linkage maps for the porcine autosomes have been constructed exploiting the high density data provided by the PorcineSNP60 BeadChip. However, a high density SSCX linkage map has not been reported up to date. The ...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-014-0148-x

    authors: Fernández AI,Muñoz M,Alves E,Folch JM,Noguera JL,Enciso MP,Rodríguez Mdel C,Silió L

    更新日期:2014-12-20 00:00:00

  • Multiple association analysis of loci and candidate genes that regulate body size at three growth stages in Simmental beef cattle.

    abstract:BACKGROUND:Body size traits as one of the main breeding selection criteria was widely used to monitor cattle growth and to evaluate the selection response. In this study, body size was defined as body height (BH), body length (BL), hip height (HH), heart size (HS), abdominal size (AS), and cannon bone size (CS). We per...

    journal_title:BMC genetics

    pub_type: 杂志文章

    doi:10.1186/s12863-020-0837-6

    authors: An B,Xu L,Xia J,Wang X,Miao J,Chang T,Song M,Ni J,Xu L,Zhang L,Li J,Gao H

    更新日期:2020-03-14 00:00:00