Detection of differential gene flow from patterns of quantitative variation.

Abstract:

:A major goal in anthropological genetics is the assessment of the effects of different microevolutionary forces. Harpending and Ward (1982) developed a model that aids in this effort by comparing observed and expected heterozygosity within populations in a local region. The expected heterozygosity within a population is a function of the total heterozygosity of the entire region and the distance of the population from the regional mean centroid of allele frequencies. Greater than average gene flow from an external source will result in a population having greater heterozygosity than expected. Less than average gene flow from an external source will result in a population having less heterozygosity than expected. We extend the Harpending-Ward model to quantitative traits using an equal and additive effects model of inheritance. Here the additive genetic variance within a population is directly proportional to heterozygosity, and its expectation is directly proportional to the genetic distance from the centroid. Under certain assumptions the expectations for phenotypic variances are similar. Observed and expected genetic or phenotypic variance can then be compared to assess the effects of differential external gene flow. When the additive genetic covariance matrix or heritabilities are not known, the phenotypic covariance matrix can be used to provide a conservative application of the model. In addition, we develop new methods for estimation of the genetic relationship matrix (R) from quantitative traits. We apply these models to two data sets: (1) six principal components derived from twenty dermatoglyphic ridge count measures for nine villages in Nepal and (2) ten anthropometric measurements for seven isolated populations in western Ireland. In both cases both the univariate and multivariate analyses provide results that can be directly interpreted in terms of historically known patterns of gene flow.

journal_name

Hum Biol

journal_title

Human biology

authors

Relethford JH,Blangero J

subject

Has Abstract

pub_date

1990-02-01 00:00:00

pages

5-25

issue

1

eissn

0018-7143

issn

1534-6617

journal_volume

62

pub_type

杂志文章
  • Age structure and sex-biased mortality among Herero pastoralists.

    abstract::Details of the population pyramid of living Herero and Mbanderu of Botswana suggest that infant and childhood mortality of males has been substantially greater than that of females. Direct tests from reproductive histories show that the hazard ratio is approximately 3 to 1 in favor of female survival in infancy and 2 ...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Harpending HC,Pennington R

    更新日期:1991-06-01 00:00:00

  • Genetic structure of Mennonite populations of Kansas and Nebraska.

    abstract::We describe the gene frequency distributions for 29 different blood group, serum, and erythrocytic proteins for three Mennonite communities from Kansas and Nebraska and compare their gene frequencies with those of Amish, Hutterite, and Mennonite populations using the topological method of Harpending and Jenkins (1973)...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Crawford MH,Dykes DD,Polesky HF

    更新日期:1989-08-01 00:00:00

  • Temporal changes and rural-urban differences in cardiovascular disease risk factors and mortality in China.

    abstract::We summarize several studies, from the last 10 years, of temporal changes and rural-urban differences in the risk factors of cardiovascular disease (CVD) in China to indicate the influences of economic modernization. Two national blood pressure surveys have shown that the prevalence of hypertension increased from 5.1%...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Zhai S,McGarvey ST

    更新日期:1992-12-01 00:00:00

  • Genetic Differentiation in a Sample from Northern Mexico City Detected by HLA System Analysis: Impact in the Study of Population Immunogenetics.

    abstract::The major histocompatibility complex is directly involved in the immune response, and thus the genes coding for its proteins are useful markers for the study of genetic diversity, susceptibility to disease (autoimmunity and infections), transplant medicine, and pharmacogenetics, among others. The polymorphism of the s...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.13110/humanbiology.89.3.02

    authors: Cortés EDJ,Sieck MAC,Perea AJA,Medrano RMM,Jaime AB,Martínez PE,Zúñiga J,Alonzo VA,Granados J,Barquera R

    更新日期:2017-07-01 00:00:00

  • Apolipoprotein A kringle 4 polymorphism and serum lipoprotein (a) concentrations in African blacks.

    abstract::Several epidemiological studies have established that elevated serum lipoprotein (a) [Lp(a)] levels are independent risk factors for coronary heart disease, stroke, and restenosis of coronary lesions in white and Asian populations. Serum Lp(a) levels vary over a 1000-fold range among individuals and are under strict g...

    journal_title:Human biology

    pub_type: 临床试验,杂志文章

    doi:

    authors: Ali S,Bunker CH,Aston CE,Ukoli FA,Kamboh MI

    更新日期:1998-06-01 00:00:00

  • Doubts about isonymy.

    abstract::The method of isonymy, developed by Crow and Mange for estimating inbreeding from surname frequencies, requires an assumption that has not been appreciated: It is necessary to assume that all males in some ancestral generation, the founding stock, had unique surnames. Because this assumption is seldom justified in rea...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Rogers AR

    更新日期:1991-10-01 00:00:00

  • Microsatellite variation at 24 STR loci in three endogamous groups of Uttar Pradesh, India.

    abstract::We have studied variation at 24 microsatellite markers among 50 individuals from each of three endogamous groups, Bhargavas, Chaturvedis, and non-Bhargava, non-Chaturvedi Brahmins of Uttar Pradesh, India. The number of alleles at the loci tested varied from 4 to 11, with an average of 6 at each locus. Heterozygosity w...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.1353/hub.2003.0014

    authors: Agrawal S,Müller B,Bharadwaj U,Bhatnagar S,Sharma A,Khan F,Agarwal SS

    更新日期:2003-02-01 00:00:00

  • Seasonality of births in a rural Zapotec municipio, 1945-1970.

    abstract::The monthly distribution of live births were analyzed over a 26-year period from 1945-70 for a rural Zapotec-speaking community in Oaxaca, Mexico. Monthly distributions of births were not what would be expected by chance (p.001). High monthly percentages of births coincided closely with the rainy season in the Oaxac...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Malina RM,Himes JH

    更新日期:1977-05-01 00:00:00

  • Presentation, heritability, and genome-wide linkage analysis of the midchildhood growth spurt in healthy children from the Fels Longitudinal Study.

    abstract::Growth is a complex process composed of distinct phases over the course of childhood. Although the pubertal growth spurt has received the most attention from auxologists and pediatricians, the midchildhood growth spurt has been less well studied. The midchildhood growth spurt refers to a relatively small increase in g...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.3378/1534-6617-80.6.623

    authors: Towne B,Williams KD,Blangero J,Czerwinski SA,Demerath EW,Nahhas RW,Dyer TD,Cole SA,Lee M,Choh AC,Duren DL,Sherwood RJ,Chumlea WC,Siervogel RM

    更新日期:2008-12-01 00:00:00

  • Is length of life predictable?

    abstract::A random sample of death records of adult males from the period 1967 to 1970 was chosen from the South Australian Registry of Births, Deaths, and Marriages. The natural parents of these individuals were identified by cross-referencing to birth certificates, and an extensive search was made of the death records for the...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Tallis GM,Leppard P

    更新日期:1997-12-01 00:00:00

  • Common major gene inheritance of extreme overweight.

    abstract::We studied 3925 individuals in 961 families to determine the mode of inheritance of overweight. As an index of overweight, we examined body mass index. Our analyses indicate that the most likely genetic model for susceptibility to overweight included moderate polygenic inheritance (34% of variance resulting from many ...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Price RA,Ness R,Laskarzewski P

    更新日期:1990-12-01 00:00:00

  • MtDNA haplogroup analysis of black Brazilian and sub-Saharan populations: implications for the Atlantic slave trade.

    abstract::Seventy individuals from two African and four black Brazilian populations were studied for the first hypervariable segment of mtDNA. To delineate a more complete phylogeographic scenario of the African mtDNA haplogroups in Brazil and to provide additional information on the nature of the Atlantic slave trade, we analy...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.1353/hub.2006.0028

    authors: Silva WA,Bortolini MC,Schneider MP,Marrero A,Elion J,Krishnamoorthy R,Zago MA

    更新日期:2006-02-01 00:00:00

  • Inverse relationship between risk of SIDS and early neonatal mortality: study of state mortality rates.

    abstract::It was predicted that at the state level early neonatal (0-6 days) mortality rates and rates for sudden infant death syndrome (SIDS) in the age range 7-364 days would be negatively correlated. Using published data for each of the 50 states and the District of Columbia over the 5-year period 1980-1984, the actual corre...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Spiers PS

    更新日期:1991-08-01 00:00:00

  • New data on the world distribution of paraoxonase (PON1 Gln 192 --> Arg) gene frequencies.

    abstract::The physiological role of human paraoxonase (PON), a serum enzyme that hydrolyzes organophosphate insecticides and nerve agents, is not clear. Of the three genes in the paraoxonase gene family, PON1 shows a polymorphism, Gln 192 --> Arg, governed by two common alleles named *Q and *R. These determine two different iso...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.1353/hub.2003.0049

    authors: Scacchi R,Corbo RM,Rickards O,De Stefano GF

    更新日期:2003-06-01 00:00:00

  • Assessment of sexual dimorphism: a critical discussion in a (paleo-) anthropological context.

    abstract::Viewed as a biological concept, sexual dimorphism does not appear to motivate debate. However, with the aim of measuring such dimorphism, several indexes have been proposed, and not all of them have been regarded as equally reliable by the biological community. The main divergence between the indexes is that their def...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.3378/027.082.0205

    authors: Ipiña SL,Durand AI

    更新日期:2010-04-01 00:00:00

  • 657del5 mutation of the Nijmegen breakage syndrome gene (NBS1) in the Turkish population.

    abstract::The 657del5 mutation of the NBS1 gene has been demonstrated in most patients with Nijmegen breakage syndrome (NBS). We identified four Turkish families in which probands were diagnosed as having NBS and found to be homozygous for the 657del5 mutation. The 657del5 allele in the four Turkish families had a single origin...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.1353/hub.2005.0056

    authors: Tekin M,Akcayoz D,Ucar C,Gulen H,Akar N

    更新日期:2005-06-01 00:00:00

  • Relationships estimated by isonymy among the Italo-Greco villages of southern Italy.

    abstract::Surnames of parents and grandparents were collected from 1993 children in the primary schools of the thirteen Italo-Greco communes that lie in two areas, four communes in Reggio Calabria in the "toe" of Italy and nine in Lecce in the "heel." The coefficients of relationship by isonymy show almost no relationship betwe...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Biondi G,Raspe P,Perrotti E,Lasker GW,Mascie-Taylor CG

    更新日期:1990-10-01 00:00:00

  • Weinberg's differential rule reconsidered.

    abstract::A central problem in research on twins is the estimation of the rates of monozygotic and dizygotic twin maternities. The estimation usually follows Weinberg's differential rule. According to this rule, the rate of dizygotic twinning is twice the rate of twin maternities in which the twins are of opposite sex. The mono...

    journal_title:Human biology

    pub_type: 杂志文章,评审

    doi:10.1353/hub.2006.0044

    authors: Fellman J,Eriksson AW

    更新日期:2006-06-01 00:00:00

  • Are languages really independent from genes? If not, what would a genetic bias affecting language diversity look like?

    abstract::It is generally accepted that the relationship between human genes and language is very complex and multifaceted. This has its roots in the “regular” complexity governing the interplay among genes and between genes and environment for most phenotypes, but with the added layer of supraontogenetic and supra-individual p...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.3378/027.083.0208

    authors: Dediu D

    更新日期:2011-04-01 00:00:00

  • The genetic position of the autochthonous subpopulation of Northern Navarre (Spain) in relation to other basque subpopulations. A study based on GM and KM immunoglobulin allotypes.

    abstract::GM and KM immunoglobulin (Ig) allotypes were tested in 118 autochthonous Basques from northern Navarre. The results are compared to those obtained for the same genetic markers in 6 other Basque subpopulations, 3 from Spain (Guipúzcoa, Vizcaya, and Alava) and 3 from France: Macaye, Saint-Jean Pied de Port, and Mauleon....

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Calderón R,Perez-Miranda A,Peña JA,Vidales C,Aresti U,Dugoujon JM

    更新日期:2000-08-01 00:00:00

  • Complement components C2, C3, and C4 (C4A and C4B) and BF polymorphisms in populations of the Indian subcontinent.

    abstract::Genetic polymorphisms of the complement components (five loci: C2, C3, C4A, C4B, and BF) have been investigated in the Telugu-speaking Hindu population of Hyderabad, Andhra Pradesh, India, and the Bangali-speaking Muslim population of Dacca, Bangladesh. The available data are compared to understand the genetic variati...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Ad'hiah AH,Papiha SS

    更新日期:1996-10-01 00:00:00

  • Genetic characterization of the population of Grande Comore Island (Njazidja) according to major blood groups.

    abstract::The Comorian population is historically considered a blend of influences from African Bantus, Arabs, and possibly Austronesians. In this study we present the first genetic data on the current Comorian population. Serologic analysis of the six major blood group systems (ABO, RH, KEL, FY, JK, and MNS) was performed on 1...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.1353/hub.2004.0053

    authors: Chiaroni J,Touinssi M,Frassati C,Degioanni A,Gibert M,Reviron D,Mercier P,Boëtsch G

    更新日期:2004-08-01 00:00:00

  • Quantitative genetics of relative organ weight variation in captive baboons.

    abstract::Anthropoid phylogeny has been characterized by dramatic increases in relative brain size. Given the importance of genetic mechanisms in evolution, quantitative genetic analyses of the biological concomitants of relative brain size variation should greatly augment our understanding of this phylogenetic phenomenon. In h...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Mahaney MC,Williams-Blangero S,Blangero J,Leland MM

    更新日期:1993-12-01 00:00:00

  • DNA polymorphisms at the lipoprotein lipase gene and their association with quantitative variation in plasma high-density lipoproteins and triacylglycerides.

    abstract::Lipoprotein lipase (LPL) plays a critical role in the metabolism of lipoproteins because this enzyme hydrolyzes the triacylglycerides in chylomicrons and very low density lipoproteins. This process influences the production of high-density lipoprotein (HDL), which takes up tissue cholesterol for transport to the liver...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Mitchell RJ,Earl L,Bray P,Fripp YJ,Williams J

    更新日期:1994-06-01 00:00:00

  • Reproductive measures, fitness, and migrating Mennonites: an evolutionary analysis.

    abstract::Given the same reproductive span, more children with shorter interbirth intervals and less parental attention per child should not do as well. There should be intermediate optima in family sizes, but only two studies have demonstrated optima. The goal here is to determine whether the relationship between fitness and f...

    journal_title:Human biology

    pub_type: 历史文章,杂志文章

    doi:10.1353/hub.2005.0010

    authors: Stevenson JC,Everson PM,Grimes M

    更新日期:2004-10-01 00:00:00

  • Mitochondrial DNA and prehistoric settlements: native migrations on the western edge of North America.

    abstract::We analyzed previously reported mtDNA haplogroup frequencies of 577 individuals and hypervariable segment 1 (HVS1) sequences of 265 individuals from Native American tribes in western North America to test hypotheses regarding the settlement of this region. These data were analyzed to determine whether Hokan and Penuti...

    journal_title:Human biology

    pub_type: 杂志文章,评审

    doi:10.1353/hub.2004.0019

    authors: Eshleman JA,Malhi RS,Johnson JR,Kaestle FA,Lorenz J,Smith DG

    更新日期:2004-02-01 00:00:00

  • Determinants of birth interval in a rural Mediterranean population (La Alpujarra, Spain).

    abstract::The fertility pattern, in terms of birth intervals, in a rural population not practicing contraception belonging to La Alta Alpujarra Oriental (southeast Spain) is analyzed. During the first half of the 20th century, this population experienced a considerable degree of geographical and cultural isolation. Because of t...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Polo V,Luna F,Fuster V

    更新日期:2000-10-01 00:00:00

  • Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution.

    abstract::A mismatch distribution is a tabulation of the number of pairwise differences among all DNA sequences in a sample. In a population that has been stationary for a long time these distributions from nonrecombinant DNA sequences become ragged and erratic, whereas a population that has been growing generates mismatch dist...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Harpending HC

    更新日期:1994-08-01 00:00:00

  • Sicilian provinces: population subdivisions revealed by surname frequencies.

    abstract::The Sicilian population has a complex history of colonization and invasions that have influenced the genetic composition of the nine provinces of the island. Because surnames are patrilineally inherited, they simulate a Y-chromosome nonrecombinant genetic locus. We used surname data and a specific sampling strategy to...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.1353/hub.2005.0015

    authors: De Silvestri A,Guglielmino CR

    更新日期:2004-12-01 00:00:00

  • Optimizing utilization of DNA from rare or archival anthropological samples.

    abstract::There is widespread interest in obtaining genetic samples from human populations worldwide for various studies of human genetic diversity. Many samples exist today only in the form of small, rare, irreplaceable, or archival samples, such as material from ancient bone, hair bulbs, or remnants of samples collected in th...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Weiss KM,Buchanan AV,Daniel C,Stoneking M

    更新日期:1994-10-01 00:00:00