Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution.

Abstract:

:A mismatch distribution is a tabulation of the number of pairwise differences among all DNA sequences in a sample. In a population that has been stationary for a long time these distributions from nonrecombinant DNA sequences become ragged and erratic, whereas a population that has been growing generates mismatch distributions that are smooth and have a peak. The position of the peak reflects the time of the population growth. The signature of an ancient population expansion is apparent even in the low-resolution mtDNA typings described by Merriwether et al. (1991). The smoothness of the mismatch distribution, an indicator of population expansion, is hardly affected by population structure, whereas mean sequence divergence increases in a pooled sample from highly isolated subpopulations.

journal_name

Hum Biol

journal_title

Human biology

authors

Harpending HC

subject

Has Abstract

pub_date

1994-08-01 00:00:00

pages

591-600

issue

4

eissn

0018-7143

issn

1534-6617

journal_volume

66

pub_type

杂志文章
  • Population biology of human aging: segregation analysis of bone age characteristics.

    abstract::The main goal of the present study is to elucidate the extent to which primary characteristics of bone aging are determined by major gene effects. We report the results of a complex segregation analysis of bone mineral density (BMD) and osseographic score (OS) carried out on an array of pedigrees from rural Turkmenia....

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Livshits G,Pavlovsky O,Kobyliansky E

    更新日期:1996-08-01 00:00:00

  • A General Model of the Relationship between the Apportionment of Human Genetic Diversity and the Apportionment of Human Phenotypic Diversity.

    abstract::Models that examine genetic differences between populations alongside a genotype-phenotype map can provide insight about phenotypic variation among groups. We generalize a simple model of a completely heritable, additive, selectively neutral quantitative trait to examine the relationship between single-locus genetic d...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.13110/humanbiology.87.4.0313

    authors: Edge MD,Rosenberg NA

    更新日期:2015-10-01 00:00:00

  • Signs of cellular immunosuppression correlate with HLA-DR phenotypes in healthy HIV-negative homosexuals: preliminary findings.

    abstract::Twelve healthy, anal-receptive, homosexual Caucasian males who were seronegative for HIV antibody were typed for HLA-DR antigens. Flow cytometry was used to immunophenotype peripheral blood lymphocytes bearing the CD4, CD8, LEU7, and combined CD8 and LEU7 antigens. These individuals had reported a large number of sexu...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Hoff C,James WC,Hester RB,Nolan P,Peterson RD

    更新日期:1991-04-01 00:00:00

  • A Review of the ischium-pubis index: accuracy,reliability, and common errors.

    abstract::This article examines the utility of the ischium-pubic index (IPI), a sexing technique that compares the lengths of pubis and ischium. The ratio was adapted by Washburn from a primate index devised by Schultz and was tested by Washburn on documented remains from the Hamann-Todd Human Osteological Collection. The IPI i...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.3378/027.085.0405

    authors: Drew R

    更新日期:2013-08-01 00:00:00

  • Introgression Makes Waves in Inferred Histories of Effective Population Size.

    abstract::Human populations have a complex history of introgression and of changing population size. Human genetic variation has been affected by both these processes, so inference of past population size depends upon the pattern of gene flow and introgression among past populations. One remarkable aspect of human population hi...

    journal_title:Human biology

    pub_type: 历史文章,杂志文章

    doi:10.13110/humanbiology.89.1.04

    authors: Hawks J

    更新日期:2017-01-01 00:00:00

  • Towards a complete North American Anabaptist Genealogy II: analysis of inbreeding.

    abstract::We describe a large genealogy data base, which can be searched by computer, of 295,095 Amish and Mennonite individuals. The data base was constructed by merging our existing Anabaptist Genealogy Database 2.0 containing approximately 85,000 individuals with a genealogy file containing approximately 242,000 individuals,...

    journal_title:Human biology

    pub_type: 历史文章,杂志文章

    doi:10.1353/hub.2001.0045

    authors: Agarwala R,Schäffer AA,Tomlin JF

    更新日期:2001-08-01 00:00:00

  • Method of path coefficients: a trademark of Sewall Wright.

    abstract::This address is a tribute to a pioneer of population genetics, including human population genetics. The unique methodology employed by Sewall Wright in many genetic problems is the method of path coefficients. This essay traces the historical landmarks in the development of the path method and then shows how some of t...

    journal_title:Human biology

    pub_type: 历史文章,杂志文章

    doi:

    authors: Li CC

    更新日期:1991-02-01 00:00:00

  • Inverse relationship between risk of SIDS and early neonatal mortality: study of state mortality rates.

    abstract::It was predicted that at the state level early neonatal (0-6 days) mortality rates and rates for sudden infant death syndrome (SIDS) in the age range 7-364 days would be negatively correlated. Using published data for each of the 50 states and the District of Columbia over the 5-year period 1980-1984, the actual corre...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Spiers PS

    更新日期:1991-08-01 00:00:00

  • Integration versus apartheid in post-Roman Britain: a response to Thomas et Al. (2008).

    abstract::The genetic surveys of the population of Britain conducted by Weale et al. and Capelli et al. produced estimates of the Germani immigration into Britain during the early Anglo-Saxon period, c.430-c.730. These estimates are considerably higher than the estimates of archaeologists. A possible explanation suggests that a...

    journal_title:Human biology

    pub_type: 历史文章,杂志文章

    doi:10.3378/027.083.0604

    authors: Pattison JE

    更新日期:2011-12-01 00:00:00

  • Immunoglobulin allotypes (GM and KM) in Basques from Spain: approach to the origin of the Basque population.

    abstract::GM and KM immunoglobulin (Ig) allotypes have been tested in 310 autochthonous Basques from the three subpopulations of Vizcaya, Guipúzcoa, and Alava, Spain. They are compared with allotypes occurring in autochthonous French Basques, some Pyrenean subpopulations in France, and European populations. The analysis suggest...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Calderón R,Vidales C,Peña JA,Perez-Miranda A,Dugoujon JM

    更新日期:1998-08-01 00:00:00

  • DNA polymorphisms at the lipoprotein lipase gene and their association with quantitative variation in plasma high-density lipoproteins and triacylglycerides.

    abstract::Lipoprotein lipase (LPL) plays a critical role in the metabolism of lipoproteins because this enzyme hydrolyzes the triacylglycerides in chylomicrons and very low density lipoproteins. This process influences the production of high-density lipoprotein (HDL), which takes up tissue cholesterol for transport to the liver...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Mitchell RJ,Earl L,Bray P,Fripp YJ,Williams J

    更新日期:1994-06-01 00:00:00

  • Single nucleotide polymorphism analysis of the nucleotide excision repair genes XPC, XPA, and XPG in the Indian population.

    abstract::We have analyzed single nucleotide polymorphisms (SNPs) in the XPC, XPA, and XPG genes of the nucleotide excision repair (NER) pathway in the Indian population. In the XPC gene we observed nine polymorphisms in the coding region, four polymorphisms in the intronic region, and two polymorphisms in the 5' untranslated r...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.1353/hub.2008.0005

    authors: Gowda S,Kumaran M,Suma BS,Rao MR

    更新日期:2007-10-01 00:00:00

  • Time series analysis of the epidemiological transition in Minorca, 1634-1997.

    abstract::Autoregressive integrated moving average (ARIMA) models provide a powerful tool for detecting seasonal patterns in mortality statistics. The strength of ARIMA models lies in their ability to reveal complex structures of temporal interdependence in time series. Moreover, changes in model parameters provide an empirical...

    journal_title:Human biology

    pub_type: 历史文章,杂志文章

    doi:10.1353/hub.2007.0006

    authors: Muñoz-Tudurí M,García-Moro C,Walker PL

    更新日期:2006-10-01 00:00:00

  • Comparison of allele frequencies of eight STR loci from Argentinian Amerindian and European populations.

    abstract::Eight STR systems (THO1, FABP, VWA, FES/FPS, HPRTB, F13A1, CSF1PO, and D6S366) were investigated in different ethnic groups of Argentina. Allele and genotype frequencies, power of exclusion, and discriminative power were investigated. Hardy-Weinberg expectations were calculated from heterozygosity levels. FST and G te...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Sala A,Penacino G,Corach D

    更新日期:1998-10-01 00:00:00

  • Apolipoprotein A kringle 4 polymorphism and serum lipoprotein (a) concentrations in African blacks.

    abstract::Several epidemiological studies have established that elevated serum lipoprotein (a) [Lp(a)] levels are independent risk factors for coronary heart disease, stroke, and restenosis of coronary lesions in white and Asian populations. Serum Lp(a) levels vary over a 1000-fold range among individuals and are under strict g...

    journal_title:Human biology

    pub_type: 临床试验,杂志文章

    doi:

    authors: Ali S,Bunker CH,Aston CE,Ukoli FA,Kamboh MI

    更新日期:1998-06-01 00:00:00

  • Simulating hemoglobin history.

    abstract::In one of the truly classic works in anthropological genetics, Frank Livingstone established the interrelationships between agriculture, mosquito ecology, malaria, and, consequently, the frequencies of sickle cell hemoglobin in West Africa. A major inference from Livingstone's study was the recency of malaria as a sel...

    journal_title:Human biology

    pub_type: 历史文章,杂志文章,评审

    doi:10.1353/hub.2003.0053

    authors: Fix AG

    更新日期:2003-08-01 00:00:00

  • Association between the APOE*4 allele and atherosclerosis is age dependent among Argentine males.

    abstract::Several studies have shown evidence of an association between the *4 allele of apolipoprotein E (APOE) and coronary heart disease (CHD) in different populations. We determined the APOE genotype and total cholesterol (TC), triglycerides (TG), and high-density lipoprotein cholesterol (HDLC) values in 189 patients with a...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.1353/hub.2005.0036

    authors: Bañares VG,Peterson G,Aguilar D,Gulayin R,Sisu E,Wyszynski DF,Pivetta OH,Tavella MJ

    更新日期:2005-04-01 00:00:00

  • Mitochondrial DNA and prehistoric settlements: native migrations on the western edge of North America.

    abstract::We analyzed previously reported mtDNA haplogroup frequencies of 577 individuals and hypervariable segment 1 (HVS1) sequences of 265 individuals from Native American tribes in western North America to test hypotheses regarding the settlement of this region. These data were analyzed to determine whether Hokan and Penuti...

    journal_title:Human biology

    pub_type: 杂志文章,评审

    doi:10.1353/hub.2004.0019

    authors: Eshleman JA,Malhi RS,Johnson JR,Kaestle FA,Lorenz J,Smith DG

    更新日期:2004-02-01 00:00:00

  • Genetic characterization of indigenous peoples from Oaxaca, Mexico, and its relation to linguistic and geographic isolation.

    abstract::We used 15 short tandem repeat (STR) loci (D8S1179, D21S11, D7S820, CSF1PO, D3S1358, TH01, D13S317, D16S539, D2S1338, D19S433, VWA, TPOX, D18S51, D5S818, and FGA) to genetically characterize 361 individuals from 11 indigenous populations (Amuzgo, Chinanteco, Chontal, Huave, Mazateco, Mixe, Mixteco, Triqui, Zapoteco de...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.3378/027.082.0405

    authors: Quinto-Cortés CD,Arriola LA,García-Hughes G,García-López R,Molina DP,Flores M,Palacios R,Piñero D

    更新日期:2010-08-01 00:00:00

  • Ethnicity and type 2 diabetes in Rio de Janeiro, Brazil, with a review of the prevalence of the disease in Amerindians.

    abstract::To what extent can ethnic factors contribute to the prevalence of type 2 diabetes and impaired glucose tolerance (IGT) in an urban Brazilian population? Conversely, how can environmental factors such as diet change these prevalences in a given ethnic group, in this case Brazilian Indians? To answer these questions est...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Palatnik M,da Silva Júnior WA,Estalote AC,de Oliveira JE,Milech A,Zago MA

    更新日期:2002-08-01 00:00:00

  • Relationship of body size and body mass to blood pressure: sex-specific and developmental influences.

    abstract::The relationship of body mass and body fat distribution to blood pressure has been recognized for many years. This relationship has formed the basis for much additional research, including the impact of growth and developmental factors on blood pressure levels. Blood pressure in children is related to somatic growth a...

    journal_title:Human biology

    pub_type: 杂志文章,评审

    doi:

    authors: Gerber LM,Stern PM

    更新日期:1999-08-01 00:00:00

  • Detection of differential gene flow from patterns of quantitative variation.

    abstract::A major goal in anthropological genetics is the assessment of the effects of different microevolutionary forces. Harpending and Ward (1982) developed a model that aids in this effort by comparing observed and expected heterozygosity within populations in a local region. The expected heterozygosity within a population ...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Relethford JH,Blangero J

    更新日期:1990-02-01 00:00:00

  • Apolipoprotein B genetic variability in Brazilian Indians.

    abstract::Three apolipoprotein B restriction fragment length polymorphism (RFLPs) (XbaI, MspI, and EcoRI) and the signal peptide insertion-deletion polymorphism were investigated using the polymerase chain reaction in 140 individuals from 5 Brazilian Indian tribes. All studied markers were polymorphic in this ethnic group. The ...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Kaufman L,Vargas AF,Coimbra Júnior CE,Santos RV,Salzano FM,Hutz MH

    更新日期:1999-02-01 00:00:00

  • Association of PPARG2 Pro12Ala variant with larger body mass index in Mestizo and Amerindian populations of Mexico.

    abstract::Previous studies have sought to associate the Pro12Ala variant of the peroxisome proliferator-activated receptor gamma2 (PPARG2) gene with type 2 diabetes, insulin resistance, and obesity, with controversial results. We have determined the Pro12Ala variant frequency in 370 nondiabetic Mexican Mestizo subjects and in f...

    journal_title:Human biology

    pub_type: 杂志文章,多中心研究

    doi:10.1353/hub.2007.0022

    authors: Canizales-Quinteros S,Aguilar-Salinas CA,Ortiz-López MG,Rodríguez-Cruz M,Villarreal-Molina MT,Coral-Vázquez R,Huertas-Vázquez A,Hernández-Caballero A,López-Alarcón M,Brito-Zurita OR,Domínguez-Banda A,Martinez-Sánchez LR,Canto-de

    更新日期:2007-02-01 00:00:00

  • Identification of a novel intron and 4 polymorphisms in the gene encoding the gamma subunit of the epithelial sodium channel.

    abstract::The amiloride-sensitive epithelial sodium channel is a highly selective sodium channel that constitutes the rate-limiting step of sodium reabsorption in distal nephrons. It consists of at least 3 subunits (alpha, beta, and gamma) of similar structure and plays an important role in sodium and fluid homeostasis. Defects...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Xu X,Niu T,Chen C,Yang J,Fang Z,Xu X

    更新日期:1999-10-01 00:00:00

  • Apolipoprotein E and H polymorphisms in Mongolian Buryat: allele frequencies and relationship with plasma lipid levels.

    abstract::A Buryat population consisting of seven tribal groups in eastern Mongolia has been screened to determine the frequency distribution of different apolipoprotein E and H alleles (APOE and APOH, genes) coding for common isoforms and their association with quantitative plasma lipid levels. Allele frequencies at the APOE l...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.1353/hub.2002.0058

    authors: Tsunoda K,Harihara S,Dashnyam B,Semjidmaa D,Yamaguchi Y,Tanabe Y,Sakai N,Sato A,Sato K

    更新日期:2002-10-01 00:00:00

  • Seasonality in birth weight: review of global patterns and potential causes.

    abstract::Birth weight is the single most significant determinant of infant mortality and the chances of a newborn to experience healthy development. Low birth weight also appears to be related to higher risks of several important chronic conditions, such as ischemic heart disease, non-insulin-dependent diabetes, and cancer in ...

    journal_title:Human biology

    pub_type: 杂志文章,评审

    doi:10.3378/027.081.0405

    authors: Chodick G,Flash S,Deoitch Y,Shalev V

    更新日期:2009-08-01 00:00:00

  • Genetic epidemiology of colon cancer in the cotton-top tamarin (Saguinus oedipus).

    abstract::Colon cancer is known to be heritable in humans, but the opportunity to investigate the genetic epidemiology of cancer in nonhuman primates has been limited by the size of available populations. The cotton-top tamarin (Saguinus oedipus) colony at the Oak Ridge Associated Universities (ORAU) Marmoset Research Center is...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:

    authors: Cheverud JM,Tardif S,Henke MA,Clapp NK

    更新日期:1993-12-01 00:00:00

  • Twinning trend in Escazú, Costa Rica, 1851-1901.

    abstract::The cross-cultural study of secular trends in twinning has been of interest to students of human biology. Although recent vital statistics are likely to be more reliable, older vital records allow a long-term study of twinning trends and of the effect of epidemics on twin incidence. Here, I report the results of an in...

    journal_title:Human biology

    pub_type: 历史文章,杂志文章

    doi:

    authors: Madrigal L

    更新日期:1997-04-01 00:00:00

  • Molecular basis of ESD*5 and ESD*7 and haplotype analysis with new polymorphisms in introns.

    abstract::The two polymorphic alleles of esterase D (ESD), ESD*5 and ESD*7, are specific to Europeans and Asians, respectively. In this study the molecular basis was characterized: ESD*5, arising from ESD*1, has a G to A transition, resulting in Gly257(GGT) --> Asp(GAT); and ESD*7, originating from ESD*2, has an A to G transiti...

    journal_title:Human biology

    pub_type: 杂志文章

    doi:10.1353/hub.2004.0051

    authors: Yuasa I,Umetsu K,Tsuchida S,Irizawa Y,Henke L,Henke J

    更新日期:2004-06-01 00:00:00