The complete mitochondrial genome analysis of the tiger (Panthera tigris).

Abstract:

:The complete mitochondrial genomes of five tiger samples from three subspecies (P. t. sumatrae, P. t. altica, and P. t. tigris) were successfully obtained by using 26 specifically designed Panthera-specific primer sets. The genome organization and gene arrangement of the five tiger samples were similar to each other; however polymorphic tandem repeat sequences were observed in the control region (CR). This led to a difference in the genome lengths obtained from these five samples with an average size of 16,994 bp for the five tiger mitochondrial genomes. The nucleotide base composition was on average as follows: A, 31.8%; T, 27.0%; C, 26.6%; G, 14.6% and exhibited compositional asymmetry. Most of tiger mitochondrial genome characteristics are similar to those of other common vertebrate species; however, some distinctive features were observed in the CR. First, the repetitive sequence 2 (RS 2) contained two repeat units of 80 bp and the first 15 bp of what would be the third repeat motif. The repetitive sequence 3 (RS 3) contained 47-50 repeat motifs of a shorter 8 bp (ACGTAYAC)(n). Second, length heteroplasmy polycystosine (poly-C) stretches was observed at the end of the HV I locus in all tiger samples.

journal_name

Mol Biol Rep

authors

Kitpipit T,Tobe SS,Linacre A

doi

10.1007/s11033-011-1384-z

subject

Has Abstract

pub_date

2012-05-01 00:00:00

pages

5745-54

issue

5

eissn

0301-4851

issn

1573-4978

journal_volume

39

pub_type

杂志文章
  • p53 Promotes proteasome-dependent degradation of oncogenic protein HBx by transcription of MDM2.

    abstract::Hepatitis B virus X protein (HBx) is closely involved in the development of hepatocellular carcinoma (HCC). Tumor suppressor p53 was reported to induce HBx degradation and repress its oncogenic function recently, but the molecular mechanism is unknown. In this study, we attempted to identify the underlying mechanism. ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-009-9855-1

    authors: Xian L,Zhao J,Wang J,Fang Z,Peng B,Wang W,Ji X,Yu L

    更新日期:2010-07-01 00:00:00

  • Staphylococcus aureus mobile genetic elements.

    abstract::Among the bacteria groups, most of them are known to be beneficial to human being whereas only a minority is being recognized as harmful. The pathogenicity of bacteria is due, in part, to their rapid adaptation in the presence of selective pressures exerted by the human host. In addition, through their genomes, bacter...

    journal_title:Molecular biology reports

    pub_type: 杂志文章,评审

    doi:10.1007/s11033-014-3367-3

    authors: Alibayov B,Baba-Moussa L,Sina H,Zdeňková K,Demnerová K

    更新日期:2014-08-01 00:00:00

  • Brain to blood efflux as a mechanism underlying the neuroprotection mediated by rapid remote preconditioning in brain ischemia.

    abstract::Glutamate represents the main excitatory neurotransmitter in the mammalian brain; however, its excessive elevation in the extracellular space is cytotoxic and can result in neuronal death. The ischemia initiated brain damage reflects changes in glutamate concentration in peripheral blood. This paper investigated the r...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-05626-w

    authors: Jachova J,Gottlieb M,Nemethova M,Bona M,Bonova P

    更新日期:2020-07-01 00:00:00

  • Replicative senescence in MSCWJ-1 human umbilical cord mesenchymal stem cells is marked by characteristic changes in motility, cytoskeletal organization, and RhoA localization.

    abstract::Here, we document changes in cell motility and organization of the contractile apparatus of human umbilical cord Wharton's jelly mesenchymal stem cells (MSCWJ-1) in the process of replicative senescence. Colocalization dynamics of F-actin and actin-binding proteins (myosin-9, α-actinin-4, RhoA) were examined in the MS...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-05476-6

    authors: Bobkov D,Polyanskaya A,Musorina A,Lomert E,Shabelnikov S,Poljanskaya G

    更新日期:2020-05-01 00:00:00

  • Genetic variants in transforming growth factor-β gene (TGFB1) affect susceptibility to schizophrenia.

    abstract::Immense body of evidence indicates that dysfunction of immune system is implicated in the etiology of schizophrenia. The immune theory of schizophrenia is supported by alterations in cytokine profile in the brain and peripheral blood. Given the strong genetic background of schizophrenia, it might be assumed that aberr...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-013-2662-8

    authors: Frydecka D,Misiak B,Beszlej JA,Karabon L,Pawlak-Adamska E,Tomkiewicz A,Partyka A,Jonkisz A,Kiejna A

    更新日期:2013-10-01 00:00:00

  • Molecular cloning, sequence identification, and tissue expression profile analysis of three novel porcine genes: SDHB, SNRPA and CRYBB1.

    abstract::The complete coding sequences of three porcine genes-SDHB, SNRPA and CRYBB1 were amplified using the reverse transcriptase polymerase chain reaction (RT-PCR) based on the conserved coding sequence information of the mouse or other mammals and highly homologous pig ESTs. These three genes were then deposited into GenBa...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-008-9229-0

    authors: An QC,Liu GY

    更新日期:2009-04-01 00:00:00

  • De novo assembly of genome and development of polymorphic microsatellite loci in the blue swimming crab (Portunus pelagicus) using RAD approach.

    abstract::The blue swimming crab (Portunus pelagicus) is a valuable marine fishery resource in Indo-West Pacific Ocean. So far, rare genetic resource of this species is available. In this report, the restriction-site associated DNA (RAD) approach was employed to mine the genomic information and identify molecular markers in P. ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-018-4339-9

    authors: Wu Q,Miao G,Li X,Liu W,Ikhwanuddin M,Ma H

    更新日期:2018-12-01 00:00:00

  • Development of SSR markers by next-generation sequencing of Korean landraces of chamoe (Cucumis melo var. makuwa).

    abstract::The oriental melon (Cucumis melo var. makuwa), called 'chamoe' in Korean, is a popular fruit crop cultivated mainly in Asia and a high-market value crop in Korea. To provide molecular breeding resources for chamoe, we developed and characterized genomic SSR markers from the preliminary Illumina read assemblies of Gotg...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-013-2803-0

    authors: Park I,Kim J,Lee J,Kim S,Cho O,Yang K,Ahn J,Nahm S,Kim H

    更新日期:2013-12-01 00:00:00

  • Identification of novel candidate genes by exome sequencing in Tunisian familial male breast cancer patients.

    abstract::Male Breast Cancer (MBC) is a rare and aggressive disease that is associated with genetic factors. Mutations in BRCA1 and BRCA2 account for 10% of all MBC cases suggesting that other genetic factors are involved. The aim of the present study is to screen whole BRCA1 and BRCA2 exons using the Ampliseq BRCA panel in Tun...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-05703-0

    authors: Ben Kridis-Rejeb W,Ben Ayed-Guerfali D,Ammous-Boukhris N,Ayadi W,Kifagi C,Charfi S,Saguem I,Sellami-Boudawara T,Daoud J,Khanfir A,Mokdad-Gargouri R

    更新日期:2020-09-01 00:00:00

  • Resistance to Chilo infuscatellus (Lepidoptera: Pyraloidea) in transgenic lines of sugarcane expressing Bacillus thuringiensis derived Vip3A protein.

    abstract::Sustainable agriculture requires management of insect pests through resistance development. The biological potential of Cry toxins and Vip protein, derived from Bacillus species, is widely recognized in this context. The identification, evaluation of new insecticidal protein genes with different mode of action and ent...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-05355-0

    authors: Riaz S,Nasir IA,Bhatti MU,Adeyinka OS,Toufiq N,Yousaf I,Tabassum B

    更新日期:2020-04-01 00:00:00

  • Cloning and functional analysis of goat glucose transporter 4.

    abstract:OBJECTIVES:Glucose transporter (GLUT) 4 is a major mediator of blood glucose levels and a key regulator of whole-body glucose homeostasis. This study aimed at evaluating the function of goat GLUT4 on glucose absorption and the effect of GLUT4 on lactose synthesis in goat mammary gland epithelial (GMGE) cells. METHODS:...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-013-2915-6

    authors: Zhu L,Yu Q,Lin J,Zhang Q,Yang Q

    更新日期:2014-02-01 00:00:00

  • Cytotoxic effect of co-expression of human hepatitis A virus 3C protease and bifunctional suicide protein FCU1 genes in a bicistronic vector.

    abstract::Recent reports on various cancer models demonstrate a great potential of cytosine deaminase/5-fluorocytosine suicide system in cancer therapy. However, this approach has limited success and its application to patients has not reached the desirable clinical significance. Accordingly, the improvement of this suicide sys...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-017-4113-4

    authors: Komissarov A,Demidyuk I,Safina D,Roschina M,Shubin A,Lunina N,Karaseva M,Kostrov S

    更新日期:2017-08-01 00:00:00

  • Genetic diversity analysis for narrow-leafed lupin (Lupinus angustifolius L.) by SSR markers.

    abstract::Narrow-leafed lupin (Lupinus angustifolius L.) is used as grain legumes, fodder for livestock and green manure in the world and has a great potential to be developed as a new crop in China. In this study, we assessed the genetic diversity among a set of 109 newly introduced accessions of narrow-leafed lupin using 76 g...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-05596-z

    authors: Ji Y,Liu R,Hu J,Huang Y,Wang D,Li G,Rahman MM,Zhang H,Wang C,Li M,Yang T,Zong X

    更新日期:2020-07-01 00:00:00

  • Difference of TGF-β/Smads signaling pathway in epithelial-mesenchymal transition of normal colonic epithelial cells induced by tumor-associated fibroblasts and colon cancer cells.

    abstract::Tumor microenvironment (TME) crucially functions in tumor initiation and progression. Stroma-tumor interactions and cellular transdifferentiation are the prerequisite for tumor formation. Transforming growth factor-β (TGF-β), a major cytokine secreted by tumor-associated fibroblasts (TAFs) and cancer cells, is a cruci...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-019-04719-5

    authors: Wang XL,Huang C

    更新日期:2019-06-01 00:00:00

  • Interferon gamma and Interleukin 10 polymorphisms in Brazilian patients with systemic lupus erythematosus.

    abstract::The pathogenesis of systemic lupus erythematosus (SLE) is complex, with several susceptibility genes and environmental factors involved in its development and clinical manifestation. Currently, there is a great amount of interest in the identification of biomarkers, as cytokines, that can quantify the susceptibility o...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-014-3106-9

    authors: da Silva HD,da Silva AP,da Silva HA,Asano NM,Maia Mde M,de Souza PR

    更新日期:2014-01-01 00:00:00

  • PDGF-induced airway smooth muscle proliferation is associated with Human antigen R activation and could be weakened by AMPK activation.

    abstract::CyclinD1 over-expression is the key pathogenetic event underlying airway smooth muscle (ASM) proliferation. Human antigen R (HuR) is a ubiquitously expressed RNA-binding protein, and is known to regulate the expression of multiple cell cycle regulators. The aim of the study is to investigate whether HuR might also be ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-011-1392-z

    authors: Zhang P,Cao M,Liu Y,Lv Z,Yang Q,Lin X,Li H,Wan Q

    更新日期:2012-05-01 00:00:00

  • Response of the ABCG2 promoter in T47D cells and BeWo cells to sex hormone treatment.

    abstract::The aim of this study was to elucidate the effects of sex hormones on activity of the ABCG2 promoter in different cell lines. T47D cells and BeWo cells were used as models for ABCG2-expressing cell lines, and luciferase assays using ABCG2 promoter-luciferase constructs were performed. It was shown that progesterone in...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-008-9395-0

    authors: Yasuda S,Kobayashi M,Itagaki S,Hirano T,Iseki K

    更新日期:2009-09-01 00:00:00

  • The effect of NF-κB antisense oligonucleotide on transdifferentiation of fibroblast in lung tissue of mice injured by bleomycin.

    abstract::To investigate the influence of NF-κB antisense oligonucleotide on transdifferentiation of fibroblast in the pathological process of bleomycin-induced pulmonary fibrosis in mice. 6 h before molding of C57BL/6 model of pulmonary fibrosis in mice, NF-κB antisense oligonucleotide was injected from caudal vein. Then the l...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-014-3273-8

    authors: Zhou Y,Zhang X,Tan M,Zheng R,Zhao L

    更新日期:2014-06-01 00:00:00

  • Association study of ACE polymorphisms and systemic lupus erythematosus in Northern Chinese Han population.

    abstract::Systemic lupus erythematosus (SLE) is an autoimmune disease, with multiple genetic and environmental factors involving in its etiology. Angiotensin converting enzyme (ACE) gene was reported to have important roles in the development and progression of SLE. In this study, a case-control study was carried out to investi...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-012-1813-7

    authors: Gong AM,Li XY,Wang YQ,Yan HX,Xu ZX,Feng Z,Xie YQ,Yin DH,Yang SZ

    更新日期:2012-10-01 00:00:00

  • RNase MRP and rRNA processing.

    abstract::RNase MRP is a ribonucleoprotein enzyme with a structure similar to RNase P. It is required for normal processing of precursor rRNA, cleaving it in the Internal Transcribed Spacer 1. ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章,评审

    doi:10.1007/BF00988708

    authors: Lindahl L,Zengel JM

    更新日期:1995-01-01 00:00:00

  • Adriamycin induces myocardium apoptosis through activation of nuclear factor kappaB in rat.

    abstract::Adriamycin is one of the most effective and useful antineoplastic agents. Acute doxorubicin cardiotoxicity involved cardiomyocyte apoptosis. In this study, we investigated whether adriamycin induced myocardium apoptosis through activation of nuclear factor kappaB in rat. Forty male Wistar rats were randomly divided in...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-007-9112-4

    authors: Li S,E M,Yu B

    更新日期:2008-12-01 00:00:00

  • N-(1-Pyrenyl) maleimide inhibits telomerase activity in a cell free system and induces apoptosis in Jurkat cells.

    abstract::Telomerase activity is repressed in normal human somatic cells, but is activated in most cancers, suggesting that telomerase may be an important target for cancer therapy. Agents that interact selectively with telomerase are anticipated to exert specific action on cancer cells. In this study, we evaluated maleimide de...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-012-1757-y

    authors: Huang PR,Yeh YM,Pao CC,Chen CY,Wang TC

    更新日期:2012-09-01 00:00:00

  • Transcriptomic analysis of Asiatic lily in the process of vernalization via RNA-seq.

    abstract::The new transcriptomes provided comprehensive sequence profiling data of transcriptomic variation during vernalization in Lily Asiatic Hybrids 'Tiny ghost'. A number of 52,277,184 sequencing raw reads totaling 5.11 Gbp of the chilling treatment (4 °C) sample and 39,466,176 sequencing raw reads totaling 3.85 Gbp of roo...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-014-3250-2

    authors: Huang J,Liu X,Wang J,Lü Y

    更新日期:2014-06-01 00:00:00

  • Suppressors of cytokine signaling (SOCS) and type 2 diabetes.

    abstract::The suppressors of cytokine signaling (SOCS) proteins are originally identified as negative regulators of cytokine-activated Janus kinase/signal transducers and activators of transcription signaling pathway, but increasing evidence reveals that SOCS proteins play an important role in the development of type 2 diabetes...

    journal_title:Molecular biology reports

    pub_type: 杂志文章,评审

    doi:10.1007/s11033-014-3079-8

    authors: Feng X,Tang H,Leng J,Jiang Q

    更新日期:2014-01-01 00:00:00

  • Dengue and Zika virus multi-epitope antigen expression in insect cells.

    abstract::Dengue virus and Zika virus are arthropod-borne flaviviruses that cause millions of infections worldwide. The co-circulation of both viruses makes serological diagnosis difficult as they share high amino acid similarities in viral proteins. Antigens are one of the key reagents in the differential diagnosis of these vi...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-05772-1

    authors: Lopes-Luz L,Junqueira IC,da Silveira LA,de Melo Pereira BR,da Silva LA,Ribeiro BM,Nagata T

    更新日期:2020-10-01 00:00:00

  • Induction of macroautophagy by heat.

    abstract::Macroautophagy is a regulated bulk degradation process of cellular components, mainly long-lived proteins or cytoplasmic organelles. Nutrient depletion is a classic inducer of macroautophagy. In this report, we have induced heat-mediated macroautophagy in several cell lines in the absence of nutrient depletion. Heat t...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-009-9451-4

    authors: Zhao Y,Gong S,Shunmei E,Zou J

    更新日期:2009-11-01 00:00:00

  • Generation and characterization of a constitutively active Stat3 protein.

    abstract::Stats are latent transcription factors involved in normal cellular signaling in response to cytokine or growth factor stimulation. Constitutive activation of Stats (primarily Stat3 and Stat5) has been implicated in growth dysregulation and oncogenesis. Furthermore, increased activation of Stats has been observed in se...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1023/b:mole.0000013503.16301.82

    authors: Barboza JA,Wang S,Schaefer TS

    更新日期:2004-03-01 00:00:00

  • Study of planarian stem cell proliferation by means of flow cytometry.

    abstract::The stem cells in freshwater flatworms (planarian) are called neoblasts. Neoblasts are capable of proliferation and differentiation into every cell type, including the gametes. For the investigation of the mechanisms of stem cells proliferation and differentiation the proper evaluation of changes in the cell cycle of ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-011-1070-1

    authors: Ermakov AM,Ermakova ON,Kudravtsev AA,Kreshchenko ND

    更新日期:2012-03-01 00:00:00

  • Ebselen, a promising antioxidant drug: mechanisms of action and targets of biological pathways.

    abstract::Ebselen, an organoselenium compound, mimics glutathione peroxidase activity. It is a multifunctional compound, which catalyzes several essential reactions for the protection of cellular components from oxidative and free radical damage. Based on a number of in vitro and in vivo studies, various mechanisms are proposed...

    journal_title:Molecular biology reports

    pub_type: 杂志文章,评审

    doi:10.1007/s11033-014-3417-x

    authors: Azad GK,Tomar RS

    更新日期:2014-08-01 00:00:00

  • Functional characterization of a Δ5-like fatty acyl desaturase and its expression during early embryogenesis in the noble scallop Chlamys nobilis Reeve.

    abstract::Long-chain polyunsaturated fatty acids (LC-PUFAs) are essential in lots of important physiological processes, while, many marine species have no or limited ability of endogenous PUFA biosynthesis, normally due to the lack of key enzymes such as fatty acid desaturase (FAD). In this study, we isolated a scallop Chlamys ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-014-3633-4

    authors: Liu H,Guo Z,Zheng H,Wang S,Wang Y,Liu W,Zhang G

    更新日期:2014-11-01 00:00:00