Conformational plasticity of glycogenin and its maltosaccharide substrate during glycogen biogenesis.

Abstract:

:Glycogenin initiates the synthesis of a maltosaccharide chain covalently attached to itself on Tyr195 via a stepwise glucosylation reaction, priming glycogen synthesis. We have captured crystallographic snapshots of human glycogenin during its reaction cycle, revealing a dynamic conformational switch between ground and active states mediated by the sugar donor UDP-glucose. This switch includes the ordering of a polypeptide stretch containing Tyr195, and major movement of an approximately 30-residue "lid" segment covering the active site. The rearranged lid guides the nascent maltosaccharide chain into the active site in either an intra- or intersubunit mode dependent upon chain length and steric factors and positions the donor and acceptor sugar groups for catalysis. The Thr83Met mutation, which causes glycogen storage disease XV, is conformationally locked in the ground state and catalytically inactive. Our data highlight the conformational plasticity of glycogenin and coexistence of two modes of glucosylation as integral to its catalytic mechanism.

authors

Chaikuad A,Froese DS,Berridge G,von Delft F,Oppermann U,Yue WW

doi

10.1073/pnas.1113921108

subject

Has Abstract

pub_date

2011-12-27 00:00:00

pages

21028-33

issue

52

eissn

0027-8424

issn

1091-6490

pii

1113921108

journal_volume

108

pub_type

杂志文章
  • Use of site-directed mutagenesis to elucidate the role of arginine-166 in the catalytic mechanism of alkaline phosphatase.

    abstract::The guanidinium group of arginine-166 has been postulated to act as an electrophilic species during phosphorylation of alkaline phosphatase. Its role could be either to stabilize the developing negative charge on the oxygen of the leaving group or the pentacoordinate transition state or to help bind the -PO2-3 group. ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.85.12.4276

    authors: Butler-Ransohoff JE,Kendall DA,Kaiser ET

    更新日期:1988-06-01 00:00:00

  • Selective expression of a plasmid cat gene at a late stage of Bacillus subtilis sporulation.

    abstract::The cat-86 gene in plasmid pPL603 specifies chloramphenicol acetyltransferase (CAT) and is selectively expressed in Bacillus subtilis at a stage in sporulation in which internal spores are first observed (approximately T8). The gene is unexpressed in vegetatively growing cells. cat-86 expression and spore formation ar...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.81.11.3457

    authors: Mongkolsuk S,Lovett PS

    更新日期:1984-06-01 00:00:00

  • Extracellular deoxyribonuclease made by group A Streptococcus assists pathogenesis by enhancing evasion of the innate immune response.

    abstract::Many pathogenic bacteria produce extracellular DNase, but the benefit of this enzymatic activity is not understood. For example, all strains of the human bacterial pathogen group A Streptococcus (GAS) produce at least one extracellular DNase, and most strains make several distinct enzymes. Despite six decades of study...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0406641102

    authors: Sumby P,Barbian KD,Gardner DJ,Whitney AR,Welty DM,Long RD,Bailey JR,Parnell MJ,Hoe NP,Adams GG,Deleo FR,Musser JM

    更新日期:2005-02-01 00:00:00

  • Electrophoretic analysis of human HLA-DR antigens from HLA-DR4 homozygous cell lines: correlation between beta-chain diversity and HLA-D.

    abstract::Two-dimensional gel electrophoresis of immunoprecipitated human HLA-DR antigens from cells expressing the HLA-DR4 haplotype shows distinct clustering of beta-chain patterns. Six unique electrophoretic variants were observed among 17 HLA-DR4 homozygous cell lines (HCL) analyzed. These patterns correlate precisely with ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.22.6962

    authors: Nepom BS,Nepom GT,Mickelson E,Antonelli P,Hansen JA

    更新日期:1983-11-01 00:00:00

  • Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma.

    abstract::Pancreatic cancer is one of the most deadly cancers affecting the Western world. Because the disease is highly metastatic and difficult to diagnosis until late stages, the 5-y survival rate is around 5%. The identification of molecular cancer drivers is critical for furthering our understanding of the disease and deve...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1202490109

    authors: Mann KM,Ward JM,Yew CC,Kovochich A,Dawson DW,Black MA,Brett BT,Sheetz TE,Dupuy AJ,Australian Pancreatic Cancer Genome Initiative.,Chang DK,Biankin AV,Waddell N,Kassahn KS,Grimmond SM,Rust AG,Adams DJ,Jenkins NA,Copela

    更新日期:2012-04-17 00:00:00

  • Rescue of Caenorhabditis elegans pharyngeal development by a vertebrate heart specification gene.

    abstract::Development of pharyngeal muscle in nematodes and cardiac muscle in vertebrates and insects involves the related homeobox genes ceh-22, nkx2.5, and tinman, respectively. To determine whether the nematode and vertebrate genes perform similar functions, we examined activity of the zebrafish nkx2.5 gene in transgenic Cae...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.95.9.5072

    authors: Haun C,Alexander J,Stainier DY,Okkema PG

    更新日期:1998-04-28 00:00:00

  • Negative regulation of Toll-like receptor 4 signaling by IL-10-dependent microRNA-146b.

    abstract::Toll-like receptors (TLRs) play key roles in detecting pathogens and initiating inflammatory responses that, subsequently, prime specific adaptive responses. Several mechanisms control TLR activity to avoid excessive inflammation and consequent immunopathology, including the anti-inflammatory cytokine IL-10. Recently,...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1219852110

    authors: Curtale G,Mirolo M,Renzi TA,Rossato M,Bazzoni F,Locati M

    更新日期:2013-07-09 00:00:00

  • Overlapping divergent genes in the maize chloroplast chromosome and in vitro transcription of the gene for tRNA.

    abstract::In the presence of the S polypeptide, maize chloroplast DNA-dependent RNA polymerase preferentially transcribes sequences within the 2200-nucleotide-pair-long maize chloroplast chromosome fragment Eco [unk] from a supercoiled chimeric plasmid cloned in Escherichia coli [Jolly, S. O. & Bogorad, L. (1980) Proc. Natl. Ac...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.78.6.3423

    authors: Schwarz Z,Jolly SO,Steinmetz AA,Bogorad L

    更新日期:1981-06-01 00:00:00

  • Lymphocyte-conditioned medium protects human monocyte-macrophages from cholesteryl ester accumulation.

    abstract::Exposure of human monocyte-macrophages to as little as 50 microliters of cultured medium from lymphocytes stimulated by concanavalin A (Con A) resulted in a dramatic decrease in the activities of the low density lipoprotein (LDL) receptor pathway, the LDL-dextran sulfate pathway, and the scavenger receptor pathway. Th...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.79.3.922

    authors: Fogelman AM,Seager J,Haberland ME,Hokom M,Tanaka R,Edwards PA

    更新日期:1982-02-01 00:00:00

  • Direct kinetic fingerprinting and digital counting of single protein molecules.

    abstract::The sensitive and accurate quantification of protein biomarkers plays important roles in clinical diagnostics and biomedical research. Sandwich ELISA and its variants accomplish the capture and detection of a target protein via two antibodies that tightly bind at least two distinct epitopes of the same antigen and hav...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2008312117

    authors: Chatterjee T,Knappik A,Sandford E,Tewari M,Choi SW,Strong WB,Thrush EP,Oh KJ,Liu N,Walter NG,Johnson-Buck A

    更新日期:2020-09-15 00:00:00

  • Transgenesis by lentiviral vectors: lack of gene silencing in mammalian embryonic stem cells and preimplantation embryos.

    abstract::The introduction of foreign genes into early mouse embryos and embryonic stem (ES) cells is invaluable for the analysis of gene function and regulation in the living animal. The use of vectors derived from retroviruses as gene transfer vehicles in this setting has had limited success because of silencing of transgene ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.251682798

    authors: Pfeifer A,Ikawa M,Dayn Y,Verma IM

    更新日期:2002-02-19 00:00:00

  • The displacement field associated with the freezing of a melt and its role in determining crystal growth kinetics.

    abstract::The atomic displacements associated with the freezing of metals and salts are calculated by treating crystal growth as an assignment problem through the use of an optimal transport algorithm. Converting these displacements into timescales based on the dynamics of the bulk liquid, we show that we can predict the activa...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1915806117

    authors: Sun G,Hawken A,Harrowell P

    更新日期:2020-02-18 00:00:00

  • Contrasting nitrogen and phosphorus budgets in urban watersheds and implications for managing urban water pollution.

    abstract::Managing excess nutrients remains a major obstacle to improving ecosystem service benefits of urban waters. To inform more ecologically based landscape nutrient management, we compared watershed inputs, outputs, and retention for nitrogen (N) and phosphorus (P) in seven subwatersheds of the Mississippi River in St. Pa...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1618536114

    authors: Hobbie SE,Finlay JC,Janke BD,Nidzgorski DA,Millet DB,Baker LA

    更新日期:2017-04-18 00:00:00

  • Gene imprinting and major histocompatibility complex class I antigen expression in the rat placenta.

    abstract::Ultrastructural immunocytochemical studies of the expression of major histocompatibility complex class I antigens in the placentas of inbred rats were performed using placentas derived from natural matings and from embryo transfers into females made pseudopregnant by mechanical stimulation. The studies utilized the WF...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.1.444

    authors: Kanbour-Shakir A,Zhang X,Rouleau A,Armstrong DT,Kunz HW,Macpherson TA,Gill TJ 3rd

    更新日期:1990-01-01 00:00:00

  • The SERCA residue Glu340 mediates interdomain communication that guides Ca2+ transport.

    abstract::The sarco(endo)plasmic reticulum Ca2+-ATPase (SERCA) is a P-type ATPase that transports Ca2+ from the cytosol into the sarco(endo)plasmic reticulum (SR/ER) lumen, driven by ATP. This primary transport activity depends on tight coupling between movements of the transmembrane helices forming the two Ca2+-binding sites a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2014896117

    authors: Geurts MMG,Clausen JD,Arnou B,Montigny C,Lenoir G,Corey RA,Jaxel C,Møller JV,Nissen P,Andersen JP,le Maire M,Bublitz M

    更新日期:2020-12-08 00:00:00

  • Oscillatory AAA+ ATPase Knk1 constitutes a novel morphogenetic pathway in fission yeast.

    abstract::Cellular morphogenesis relies partly on cell polarization by the cytoskeleton. In the fission yeast Schizosaccharomyces pombe, it is well established that microtubules (MTs) deliver the spatial cue Tea1, a kelch repeat protein, to the tip regions to direct the growth machinery at the cell tips driving the linear exten...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1407226111

    authors: Scheffler K,Recouvreux P,Paoletti A,Tran PT

    更新日期:2014-12-16 00:00:00

  • Partial purification and characterization of a membrane-derived factor regulating neurotransmitter phenotypic expression.

    abstract::Cell membrane contact induces the de novo expression of choline O-acetyltransferase (CAT; acetyl-CoA: choline O-acetyltransferase, EC 2.3.1.6) activity in cultures of virtually pure neonatal rat dissociated sympathetic neurons. To identify molecular mechanisms underlying membrane-associated CAT induction, the responsi...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.86.3.1080

    authors: Adler JE,Schleifer LS,Black IB

    更新日期:1989-02-01 00:00:00

  • Pronounced zonal heterogeneity in Eocene southern high-latitude sea surface temperatures.

    abstract::Paleoclimate studies suggest that increased global warmth during the Eocene epoch was greatly amplified at high latitudes, a state that climate models cannot fully reproduce. However, proxy estimates of Eocene near-Antarctic sea surface temperatures (SSTs) have produced widely divergent results at similar latitudes, w...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1321441111

    authors: Douglas PM,Affek HP,Ivany LC,Houben AJ,Sijp WP,Sluijs A,Schouten S,Pagani M

    更新日期:2014-05-06 00:00:00

  • Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions.

    abstract::Regulation of gene expression is usually separated into cis and trans components. The separation may become artificial if much of the variation in expression is under multigenic and epistatic (e.g., cis-by-trans) control. There is hence a need to quantify the relative contribution of cis, trans, and cis-by-trans effec...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0711774105

    authors: Wang HY,Fu Y,McPeek MS,Lu X,Nuzhdin S,Xu A,Lu J,Wu ML,Wu CI

    更新日期:2008-04-29 00:00:00

  • Tension responses to rapid pressure release in glycerinated rabbit muscle fibers.

    abstract::We have previously shown that the isometric tension of a fully calcium-activated skinned rabbit psoas muscle fiber is reversibly depressed by increased hydrostatic pressure. We report here the characterization of tension transients induced by a rapid (less than 1-ms) release of increased pressure at 12 degrees C. The ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.88.16.7323

    authors: Fortune NS,Geeves MA,Ranatunga KW

    更新日期:1991-08-15 00:00:00

  • Dynamic antibody responses to the Mycobacterium tuberculosis proteome.

    abstract::Considerable effort has been directed toward controlling tuberculosis, which kills almost two million people yearly. High on the research agenda is the discovery of biomarkers of active tuberculosis (TB) for diagnosis and for monitoring treatment outcome. Rational biomarker discovery requires understanding host-pathog...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1009080107

    authors: Kunnath-Velayudhan S,Salamon H,Wang HY,Davidow AL,Molina DM,Huynh VT,Cirillo DM,Michel G,Talbot EA,Perkins MD,Felgner PL,Liang X,Gennaro ML

    更新日期:2010-08-17 00:00:00

  • Legionella pneumophila glucosyltransferase inhibits host elongation factor 1A.

    abstract::Legionella pneumophila, the causal agent of Legionnaires' disease, is an intracellular parasite and invades and proliferates within different eukaryotic cells, including human alveolar macrophages. After several 100-fold multiplication within host cells, the pathogens are released for new invasion by induction of apop...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0601562103

    authors: Belyi Y,Niggeweg R,Opitz B,Vogelsgesang M,Hippenstiel S,Wilm M,Aktories K

    更新日期:2006-11-07 00:00:00

  • Long-term potentiation involves increases in the probability of neurotransmitter release.

    abstract::There is great interest in understanding the mechanisms of expression underlying long-term potentiation (LTP). They are agreed to involve an increase in synaptic efficacy, which is described by three multiplicative parameters: p, the probability of neurotransmitter release; n, the number of active release sites; and q...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.94.11.5888

    authors: Schulz PE

    更新日期:1997-05-27 00:00:00

  • The specific direct interaction of helper T cells and antigen-presenting B cells.

    abstract::Cell couples have been formed by mixing an antigen- and Ia-specific cloned helper T-cell line with a B-cell hybridoma presenting the antigen. By immunofluorescence observations, we have shown that the microtubule-organizing center (MTOC) inside the helper T cell, but not in the bound antigen-presenting cell, becomes o...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.16.6080

    authors: Kupfer A,Swain SL,Janeway CA Jr,Singer SJ

    更新日期:1986-08-01 00:00:00

  • Human-started wildfires expand the fire niche across the United States.

    abstract::The economic and ecological costs of wildfire in the United States have risen substantially in recent decades. Although climate change has likely enabled a portion of the increase in wildfire activity, the direct role of people in increasing wildfire activity has been largely overlooked. We evaluate over 1.5 million g...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1617394114

    authors: Balch JK,Bradley BA,Abatzoglou JT,Nagy RC,Fusco EJ,Mahood AL

    更新日期:2017-03-14 00:00:00

  • Prenatal neurogenesis induction therapy normalizes brain structure and function in Down syndrome mice.

    abstract::Down syndrome (DS) caused by trisomy of chromosome 21 is the most common genetic cause of intellectual disability. Although the prenatal diagnosis of DS has become feasible, there are no therapies available for the rescue of DS-related neurocognitive impairment. A growth inducer newly identified in our screen of neura...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1704143114

    authors: Nakano-Kobayashi A,Awaya T,Kii I,Sumida Y,Okuno Y,Yoshida S,Sumida T,Inoue H,Hosoya T,Hagiwara M

    更新日期:2017-09-19 00:00:00

  • Tubular presentations pi of subsets of manifolds.

    abstract::In this note the Weierstrass integral J is taken as L, the Riemann integral of length. Here M(n), n > 1, is a compact, connected manifold of class C(infinity) with a positive definite Riemann structure. Presentations (phi, U(phi)) in M(n) and geodesics (with the aid of the Euler-Riemann equations) are defined in Morse...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.74.6.2209

    authors: Morse M

    更新日期:1977-06-01 00:00:00

  • Genome complexity reduction for SNP genotyping analysis.

    abstract::Efficient single nucleotide polymorphism (SNP) genotyping methods are necessary to accomplish many current gene discovery goals. A crucial element in large-scale SNP genotyping is the number of individual biochemical reactions that must be performed. An efficient method that can be used to simultaneously amplify a set...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.261710699

    authors: Jordan B,Charest A,Dowd JF,Blumenstiel JP,Yeh Rf RF,Osman A,Housman DE,Landers JE

    更新日期:2002-03-05 00:00:00

  • A genetic approach to trace neural circuits.

    abstract::Mammalian nervous system function involves billions of neurons which are interconnected in a multitude of neural circuits. Here we describe a genetic approach to chart neural circuits. By using an olfactory-specific promoter, we selectively expressed barley lectin in sensory neurons in the olfactory epithelium and vom...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.6.3194

    authors: Horowitz LF,Montmayeur JP,Echelard Y,Buck LB

    更新日期:1999-03-16 00:00:00

  • Probing synaptic vesicle fusion by altering mechanical properties of the neuronal surface membrane.

    abstract::Because synaptic vesicle exocytosis is a nano-mechanical process, it should be influenced by the mechanical properties of the cell membrane to which the vesicle fuses. By dissolving surfactants at various concentrations in the neuronal membrane, we have perturbed mechanical properties of the membrane and have found th...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0809714105

    authors: Zhu Y,Stevens CF

    更新日期:2008-11-18 00:00:00