Nucleosome positioning in a model of active chromatin remodeling enzymes.

Abstract:

:Accounting for enzyme-mediated active sliding, disassembly, and sequence-dependent positioning of nucleosomes, we simulate nucleosome occupancy over cell-cycle-scale times using a stochastic kinetic model. We show that ATP-dependent active nucleosome sliding and nucleosome removal processes are essential to obtain in vivo-like nucleosome positioning. While active sliding leads to dense nucleosome filling, sliding events alone cannot ensure sequence-dependent nucleosome positioning: Active nucleosome removal is the crucial remodeling event that drives positioning. We also show that remodeling activity changes nucleosome dynamics from glassy to liquid-like, and that remodeling dramatically influences exposure dynamics of promoter regions.

authors

Padinhateeri R,Marko JF

doi

10.1073/pnas.1015206108

subject

Has Abstract

pub_date

2011-05-10 00:00:00

pages

7799-803

issue

19

eissn

0027-8424

issn

1091-6490

pii

1015206108

journal_volume

108

pub_type

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