A dynamic method based on the specific substrate uptake rate to set up a feeding strategy for Pichia pastoris.

Abstract:

BACKGROUND:Pichia pastoris is one of the most important host organisms for the recombinant production of proteins in industrial biotechnology. To date, strain specific parameters, which are needed to set up feeding profiles for fed batch cultivations, are determined by time-consuming continuous cultures or consecutive fed batch cultivations, operated at different parameter sets. RESULTS:Here, we developed a novel approach based on fast and easy to do batch cultivations with methanol pulses enabling a more rapid determination of the strain specific parameters specific substrate uptake rate qs, specific productivity qp and the adaption time (Δtimeadapt) of the culture to methanol. Based on qs, an innovative feeding strategy to increase the productivity of a recombinant Pichia pastoris strain was developed. Higher specific substrate uptake rates resulted in increased specific productivity, which also showed a time dependent trajectory. A dynamic feeding strategy, where the setpoints for qs were increased stepwise until a qs max of 2.0 mmol·g-1·h-1 resulted in the highest specific productivity of 11 U·g-1·h-1. CONCLUSIONS:Our strategy describes a novel and fast approach to determine strain specific parameters of a recombinant Pichia pastoris strain to set up feeding profiles solely based on the specific substrate uptake rate. This approach is generic and will allow application to other products and other hosts.

journal_name

Microb Cell Fact

journal_title

Microbial cell factories

authors

Dietzsch C,Spadiut O,Herwig C

doi

10.1186/1475-2859-10-14

subject

Has Abstract

pub_date

2011-03-03 00:00:00

pages

14

issn

1475-2859

pii

1475-2859-10-14

journal_volume

10

pub_type

杂志文章
  • Isolation and characterization of high exopolysaccharide-producing Weissella confusa VP30 from young children's feces.

    abstract:BACKGROUND:Lactic acid bacteria (LAB) are known to have a significant ability to colonize the human intestinal tract and adhere to the surface of intestinal epithelial cells. Among the various lactic acid bacteria, exopolysaccharide (EPS) producing strains are known to provide a variety of health benefits for their hos...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-019-1158-1

    authors: Jin H,Jeong Y,Yoo SH,Johnston TV,Ku S,Ji GE

    更新日期:2019-06-13 00:00:00

  • Rare codon content affects the solubility of recombinant proteins in a codon bias-adjusted Escherichia coli strain.

    abstract:BACKGROUND:The expression of heterologous proteins in Escherichia coli is strongly affected by codon bias. This phenomenon occurs when the codon usage of the mRNA coding for the foreign protein differs from that of the bacterium. The ribosome pauses upon encountering a rare codon and may detach from the mRNA, thereby t...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/1475-2859-8-41

    authors: Rosano GL,Ceccarelli EA

    更新日期:2009-07-24 00:00:00

  • Combined metabolic engineering of precursor and co-factor supply to increase α-santalene production by Saccharomyces cerevisiae.

    abstract:BACKGROUND:Sesquiterpenes are a class of natural products with a diverse range of attractive industrial proprieties. Due to economic difficulties of sesquiterpene production via extraction from plants or chemical synthesis there is interest in developing alternative and cost efficient bioprocesses. The hydrocarbon α-sa...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/1475-2859-11-117

    authors: Scalcinati G,Partow S,Siewers V,Schalk M,Daviet L,Nielsen J

    更新日期:2012-08-31 00:00:00

  • Identifying genomic targets for protein over-expression by "omics" analysis of Quiescent Escherichia coli cultures.

    abstract:BACKGROUND:A cellular stress response is triggered upon induction of recombinant protein expression which feedback inhibits both growth as well as protein synthesis. In order to separate these two effects, it was decided to study "quiescent cultures" which continue to be metabolically active and express recombinant pro...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-017-0744-3

    authors: Mahalik S,Sharma AK,Jain P,Mukherjee KJ

    更新日期:2017-07-28 00:00:00

  • Systems analysis of methylerythritol-phosphate pathway flux in E. coli: insights into the role of oxidative stress and the validity of lycopene as an isoprenoid reporter metabolite.

    abstract:BACKGROUND:High-throughput screening methods assume that the output measured is representative of changes in metabolic flux toward the desired product and is not affected by secondary phenotypes. However, metabolic engineering can result in unintended phenotypes that may go unnoticed in initial screening. The red pigme...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-015-0381-7

    authors: Bongers M,Chrysanthopoulos PK,Behrendorff JB,Hodson MP,Vickers CE,Nielsen LK

    更新日期:2015-11-26 00:00:00

  • Engineering Corynebacterium glutamicum for violacein hyper production.

    abstract:BACKGROUND:Corynebacterium glutamicum was used as a metabolic engineering chassis for production of crude violacein (mixture of violacein and deoxyviolacein) due to Corynebacterium's GRAS status and advantages in tryptophan fermentation. The violacein is a commercially potential compound with various applications deriv...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-016-0545-0

    authors: Sun H,Zhao D,Xiong B,Zhang C,Bi C

    更新日期:2016-08-24 00:00:00

  • Exploring native genetic elements as plug-in tools for synthetic biology in the cyanobacterium Synechocystis sp. PCC 6803.

    abstract:BACKGROUND:The unicellular cyanobacterium Synechocystis sp. PCC 6803 has been widely used as a photoautotrophic host for synthetic biology studies. However, as a green chassis to capture CO2 for biotechnological applications, the genetic toolbox for Synechocystis 6803 is still a limited factor. RESULTS:We systematical...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-018-0897-8

    authors: Liu D,Pakrasi HB

    更新日期:2018-03-26 00:00:00

  • Catabolic regulation analysis of Escherichia coli and its crp, mlc, mgsA, pgi and ptsG mutants.

    abstract:BACKGROUND:Most bacteria can use various compounds as carbon sources. These carbon sources can be either co-metabolized or sequentially metabolized, where the latter phenomenon typically occurs as catabolite repression. From the practical application point of view of utilizing lignocellulose for the production of biofu...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/1475-2859-10-67

    authors: Yao R,Hirose Y,Sarkar D,Nakahigashi K,Ye Q,Shimizu K

    更新日期:2011-08-11 00:00:00

  • Mevalonate production from ethanol by direct conversion through acetyl-CoA using recombinant Pseudomonas putida, a novel biocatalyst for terpenoid production.

    abstract:BACKGROUND:Bioethanol is one of the most representative eco-friendly fuels developed to replace the non-renewable fossil fuels and is the most successful commercially available bio-conversion technology till date. With the availability of inexpensive carbon sources, such as cellulosic biomass, bioethanol production has...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-019-1213-y

    authors: Yang J,Son JH,Kim H,Cho S,Na JG,Yeon YJ,Lee J

    更新日期:2019-10-10 00:00:00

  • Metabolic engineering of Acremonium chrysogenum for improving cephalosporin C production independent of methionine stimulation.

    abstract:BACKGROUND:Cephalosporin C (CPC) produced by Acremonium chrysogenum is one of the most important drugs for treatment of bacterial infectious diseases. As the major stimulant, methionine is widely used in the industrial production of CPC. In this study, we found methionine stimulated CPC production through enhancing the...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-018-0936-5

    authors: Liu J,Gao W,Pan Y,Liu G

    更新日期:2018-06-07 00:00:00

  • Metabolic engineering of microorganisms for the production of L-arginine and its derivatives.

    abstract::L-arginine (ARG) is an important amino acid for both medicinal and industrial applications. For almost six decades, the research has been going on for its improved industrial level production using different microorganisms. While the initial approaches involved random mutagenesis for increased tolerance to ARG and con...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-014-0166-4

    authors: Shin JH,Lee SY

    更新日期:2014-12-03 00:00:00

  • A step ahead: combining protein purification and correct folding selection.

    abstract::The success of recombinant protein expression seems unpredictable and even good yields of soluble proteins do not guarantee the correct folding. The search for soluble constructs can be performed by exploiting libraries and speeded up by automation, but these approaches are money and time consuming and the tags used f...

    journal_title:Microbial cell factories

    pub_type: 社论

    doi:10.1186/1475-2859-3-12

    authors: de Marco A

    更新日期:2004-10-07 00:00:00

  • Production and characterization of two medium-chain-length polydroxyalkanoates by engineered strains of Yarrowia lipolytica.

    abstract:BACKGROUND:The oleaginous yeast Yarrowia lipolytica is an organism of choice for the tailored production of various compounds such as biofuels or biopolymers. When properly engineered, it is capable of producing medium-chain-length polyhydroxyalkanoate (mcl-PHA), a biobased and biodegradable polymer that can be used as...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-019-1140-y

    authors: Rigouin C,Lajus S,Ocando C,Borsenberger V,Nicaud JM,Marty A,Avérous L,Bordes F

    更新日期:2019-05-31 00:00:00

  • Improving yeast strains using recyclable integration cassettes, for the production of plant terpenoids.

    abstract:BACKGROUND:Terpenoids constitute a large family of natural products, attracting commercial interest for a variety of uses as flavours, fragrances, drugs and alternative fuels. Saccharomyces cerevisiae offers a versatile cell factory, as the precursors of terpenoid biosynthesis are naturally synthesized by the sterol bi...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/1475-2859-10-4

    authors: Ignea C,Cvetkovic I,Loupassaki S,Kefalas P,Johnson CB,Kampranis SC,Makris AM

    更新日期:2011-01-28 00:00:00

  • Efficient ammonium uptake and mobilization of vacuolar arginine by Saccharomyces cerevisiae wine strains during wine fermentation.

    abstract:BACKGROUND:Under N-limiting conditions, Saccharomyces cerevisiae strains display a substantial variability in their biomass yield from consumed nitrogen -in particular wine yeasts exhibit high growth abilities- that is correlated with their capacity to complete alcoholic fermentation, a trait of interest for fermented ...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-014-0109-0

    authors: Crépin L,Sanchez I,Nidelet T,Dequin S,Camarasa C

    更新日期:2014-08-19 00:00:00

  • An automated workflow for enhancing microbial bioprocess optimization on a novel microbioreactor platform.

    abstract:BACKGROUND:High-throughput methods are widely-used for strain screening effectively resulting in binary information regarding high or low productivity. Nevertheless achieving quantitative and scalable parameters for fast bioprocess development is much more challenging, especially for heterologous protein production. He...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/1475-2859-11-144

    authors: Rohe P,Venkanna D,Kleine B,Freudl R,Oldiges M

    更新日期:2012-10-31 00:00:00

  • Development of a GIN11/FRT-based multiple-gene integration technique affording inhibitor-tolerant, hemicellulolytic, xylose-utilizing abilities to industrial Saccharomyces cerevisiae strains for ethanol production from undetoxified lignocellulosic hemicel

    abstract:BACKGROUND:Bioethanol produced by the yeast Saccharomyces cerevisiae is currently one of the most promising alternatives to conventional transport fuels. Lignocellulosic hemicelluloses obtained after hydrothermal pretreatment are important feedstock for bioethanol production. However, hemicellulosic materials cannot be...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-014-0145-9

    authors: Hasunuma T,Hori Y,Sakamoto T,Ochiai M,Hatanaka H,Kondo A

    更新日期:2014-10-12 00:00:00

  • Bioprocess control in microscale: scalable fermentations in disposable and user-friendly microfluidic systems.

    abstract:BACKGROUND:The efficiency of biotechnological production processes depends on selecting the best performing microbial strain and the optimal cultivation conditions. Thus, many experiments have to be conducted, which conflicts with the demand to speed up drug development processes. Consequently, there is a great need fo...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/1475-2859-9-86

    authors: Funke M,Buchenauer A,Mokwa W,Kluge S,Hein L,Müller C,Kensy F,Büchs J

    更新日期:2010-11-13 00:00:00

  • High-level intracellular expression of heterologous proteins in Brevibacillus choshinensis SP3 under the control of a xylose inducible promoter.

    abstract:BACKGROUND:In past years research has focused on the development of alternative Gram positive bacterial expression systems to produce industrially relevant proteins. Brevibacillus choshinensis is an easy to handle non-sporulating bacterium, lacking extracellular proteases, that has been already shown to provide a high ...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/1475-2859-12-12

    authors: D'Urzo N,Martinelli M,Nenci C,Brettoni C,Telford JL,Maione D

    更新日期:2013-02-01 00:00:00

  • Microbial production of sabinene--a new terpene-based precursor of advanced biofuel.

    abstract:BACKGROUND:Sabinene, one kind of monoterpene, accumulated limitedly in natural organisms, is being explored as a potential component for the next generation of aircraft fuels. And demand for advanced fuels impels us to develop biosynthetic routes for the production of sabinene from renewable sugar. RESULTS:In this stu...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/1475-2859-13-20

    authors: Zhang H,Liu Q,Cao Y,Feng X,Zheng Y,Zou H,Liu H,Yang J,Xian M

    更新日期:2014-02-10 00:00:00

  • Optimizing Escherichia coli as a protein expression platform to produce Mycobacterium tuberculosis immunogenic proteins.

    abstract:BACKGROUND:A number of valuable candidates as tuberculosis vaccine have been reported, some of which have already entered clinical trials. The new vaccines, especially subunit vaccines, need multiple administrations in order to maintain adequate life-long immune memory: this demands for high production levels and degre...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/1475-2859-12-115

    authors: Piubelli L,Campa M,Temporini C,Binda E,Mangione F,Amicosante M,Terreni M,Marinelli F,Pollegioni L

    更新日期:2013-11-19 00:00:00

  • Increasing on-target cleavage efficiency for CRISPR/Cas9-induced large fragment deletion in Myxococcus xanthus.

    abstract:BACKGROUND:The CRISPR/Cas9 system is a powerful tool for genome editing, in which the sgRNA binds and guides the Cas9 protein for the sequence-specific cleavage. The protocol is employable in different organisms, but is often limited by cell damage due to the endonuclease activity of the introduced Cas9 and the potenti...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-017-0758-x

    authors: Yang YJ,Wang Y,Li ZF,Gong Y,Zhang P,Hu WC,Sheng DH,Li YZ

    更新日期:2017-08-16 00:00:00

  • Production of a recombinant peroxidase in different glyco-engineered Pichia pastoris strains: a morphological and physiological comparison.

    abstract:BACKGROUND:The methylotrophic yeast Pichia pastoris is a common host for the production of recombinant proteins. However, hypermannosylation hinders the use of recombinant proteins from yeast in most biopharmaceutical applications. Glyco-engineered yeast strains produce more homogeneously glycosylated proteins, but can...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-018-1032-6

    authors: Pekarsky A,Veiter L,Rajamanickam V,Herwig C,Grünwald-Gruber C,Altmann F,Spadiut O

    更新日期:2018-11-24 00:00:00

  • Relative contributions of non-essential Sec pathway components and cell envelope-associated proteases to high-level enzyme secretion by Bacillus subtilis.

    abstract:BACKGROUND:Bacillus subtilis is an important industrial workhorse applied in the production of many different commercially relevant proteins, especially enzymes. Virtually all of these proteins are secreted via the general secretion (Sec) pathway. Studies from different laboratories have demonstrated essential or non-e...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-020-01315-2

    authors: Neef J,Bongiorni C,Schmidt B,Goosens VJ,van Dijl JM

    更新日期:2020-02-28 00:00:00

  • Tailoring nutritional and process variables for hyperproduction of catalase from a novel isolated bacterium Geobacillus sp. BSS-7.

    abstract:BACKGROUND:Catalase (EC 1.11.1.6) is one of the important industrial enzyme employed in diagnostic and analytical methods in the form of biomarkers and biosensors in addition to their enormous applications in textile, paper, food and pharmaceutical sectors. The present study demonstrates the utility of a newly isolated...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-016-0410-1

    authors: Kauldhar BS,Sooch BS

    更新日期:2016-01-14 00:00:00

  • Selection, characterization, and thermal stabilization of llama single domain antibodies towards Ebola virus glycoprotein.

    abstract:BACKGROUND:A key advantage of recombinant antibody technology is the ability to optimize and tailor reagents. Single domain antibodies (sdAbs), the recombinantly produced variable domains derived from camelid and shark heavy chain antibodies, provide advantages of stability and solubility and can be further engineered ...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-017-0837-z

    authors: Liu JL,Shriver-Lake LC,Anderson GP,Zabetakis D,Goldman ER

    更新日期:2017-12-12 00:00:00

  • Bacterial autoinduction: looking outside the cell for new metabolic engineering targets.

    abstract::Recent evidence has demonstrated that cell-to-cell signaling is a fundamental activity carried out by numerous microorganisms. A number of specialized processes are reported to be regulated by density-dependent signaling molecules including antibiotic production, bioluminescence, biofilm formation, genetic competence,...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/1475-2859-1-5

    authors: DeLisa MP,Bentley WE

    更新日期:2002-12-20 00:00:00

  • Microbial production host selection for converting second-generation feedstocks into bioproducts.

    abstract:BACKGROUND:Increasingly lignocellulosic biomass hydrolysates are used as the feedstock for industrial fermentations. These biomass hydrolysates are complex mixtures of different fermentable sugars, but also inhibitors and salts that affect the performance of the microbial production host. The performance of six industr...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/1475-2859-8-64

    authors: Rumbold K,van Buijsen HJ,Overkamp KM,van Groenestijn JW,Punt PJ,van der Werf MJ

    更新日期:2009-12-04 00:00:00

  • Cooperation of hydrolysis modes among xylanases reveals the mechanism of hemicellulose hydrolysis by Penicillium chrysogenum P33.

    abstract:BACKGROUND:Xylanases randomly cleave the internal β-1,4-glycosidic bonds in the xylan backbone and are grouped into different families in the carbohydrate-active enzyme (CAZy) database. Although multiple xylanases are detected in single strains of many filamentous fungi, no study has been reported on the composition, s...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-019-1212-z

    authors: Yang Y,Yang J,Wang R,Liu J,Zhang Y,Liu L,Wang F,Yuan H

    更新日期:2019-09-21 00:00:00

  • A novel locus for mycelial aggregation forms a gateway to improved Streptomyces cell factories.

    abstract:BACKGROUND:Streptomycetes produce a plethora of natural products including antibiotics and anticancer drugs, as well as many industrial enzymes. Their mycelial life style is a major bottleneck for industrial exploitation and over decades strain improvement programs have selected production strains with better growth pr...

    journal_title:Microbial cell factories

    pub_type: 杂志文章

    doi:10.1186/s12934-015-0224-6

    authors: van Dissel D,Claessen D,Roth M,van Wezel GP

    更新日期:2015-04-01 00:00:00