Phylogeny of the lichen genus Placopsis and its allies based on Bayesian analyses of nuclear and mitochondrial sequences.

Abstract:

:The phylogenetic relationships of the lichen genus Placopsis and related genera in the Agyriales were analyzed using molecular data. We obtained a total of 66 new sequences from the nuclear ITS, LSU and the mitochondrial SSU rDNA. Phylogenetic analyses were conducted in a Bayesian and a maximum-parsimony framework. Our analyses show that Placopsis is paraphyletic with members of Orceolina nesting within the genus. A morphological character supporting the Placopsis-Orceolina clade is the non-amyloid ascus. The section Aspiciliopsis as defined by sunken fruiting bodies is not supported, but the type species of Aspiciliopsis is more closely related to Orceolina. This clade shares apothecia with reduced amphithecia as apomorphic character. We suggest resurrecting the generic name Aspiciliopsis. Trapelia is the sister genus to Placopsis and Aspiciliopsis/Orceolina.

journal_name

Mycologia

journal_title

Mycologia

authors

Schmitt I,Lumbsch HT,Søchting U

subject

Has Abstract

pub_date

2003-09-01 00:00:00

pages

827-35

issue

5

eissn

0027-5514

issn

1557-2536

pii

95/5/827

journal_volume

95

pub_type

杂志文章
  • Transformation of Phomopsis viticola with the green fluorescent protein.

    abstract::Phomopsis viticola is the causal agent of Phomopsis cane and leaf spot on Vitis spp., a persistent and economically important disease in temperate regions. Here we describe the transformation of this fungus with two different constructs (pBHt2_sGFP and pIGPAPA) containing the green fluorescent protein (GFP) and the hy...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/09-007

    authors: Anco DJ,Kim S,Mitchell TK,Madden LV,Ellis MA

    更新日期:2009-11-01 00:00:00

  • Reconsideration of Protocrea (Hypocreales, Hypocreaceae).

    abstract::The genus Protocrea is redefined, based on holotype and fresh specimens of its type species P. farinosa, using morphology of teleomorph and anamorph and phylogenetic analyses of rpb2 sequences. Data based on currently available specimens suggest the existence of three well defined and three still unnamed species. Apar...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/08-101

    authors: Jaklitsch WM,Põldmaa K,Samuels GJ

    更新日期:2008-11-01 00:00:00

  • Regional and local population structure of the pioneer wood-decay fungus Trichaptum abietinum.

    abstract::The population structure of 11 Fennoscandian geographic populations of the pioneer wood-decay basidiomycete Trichaptum abietinum was assessed with PCR-RFLPs, intersequence simple repeats (ISSRs) and mating studies. The three codominant PCR-RFLP markers (1) internal transcribed spacer 2 (nrDNA), (2) glyceraldehyde-3-ph...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:

    authors: Kauserud H,Schumacher T

    更新日期:2003-05-01 00:00:00

  • Caecomyces sympodialis sp. nov., a new rumen fungus isolated from Bos indicus.

    abstract::A new anaerobic rumen fungus was isolated from the rumen fluid of a yellow cow (Bos indicus). This fungus appears to be a previously undescribed species of the genus Caecomyces, it possessing uniflagellate zoospores, a spherical holdfast, tubular sporangiophores and bulbous rhizoids. This new fungus also features dist...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/mycologia.99.1.125

    authors: Chen YC,Tsai SD,Cheng HL,Chien CY,Hu CY,Cheng TY

    更新日期:2007-01-01 00:00:00

  • Clarifying the butter Boletes: a new genus, Butyriboletus, is established to accommodate Boletus sect. Appendiculati, and six new species are described.

    abstract::The butter boletes (Boletus s.l. sect. Appendiculati) are an economically important group of ectomycorrhizal fungi whose basidiocarps have a yellow tube layer that often bruises blue, yellow reticulate stipe, mild flavor and firm yellow-tinged flesh that may or may not turn blue when exposed. Morphological characters ...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/13-052

    authors: Arora D,Frank JL

    更新日期:2014-05-01 00:00:00

  • A mutualistic symbiosis between a dark septate endophytic fungus, Heteroconium chaetospira, and a nonmycorrhizal plant, Chinese cabbage.

    abstract::Symbiotic microorganisms, such as mycorrhizal fungi, are known to associate with most plants; however members of the Cruciferae are an exception. We investigated nutrient exchange between a dark septate endophytic fungus, Heteroconium chaetospira, and Chinese cabbage plants (Cruciferae) in vitro. Chinese cabbage could...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/mycologia.99.2.175

    authors: Usuki F,Narisawa K

    更新日期:2007-03-01 00:00:00

  • Impact of osmotic and matric water stress on germination, growth, mycelial water potentials and endogenous accumulation of sugars and sugar alcohols in Fusarium graminearum.

    abstract::Studies were conducted to determine the effect of osmotic (NaCl, glycerol) and matric (PEG 8000) water stress on temporal germination and growth of two F. graminearum strains over the water potential range of -0.7 to -14.0 MPa at 15 and 25 C. The effect on endogenous water potentials and accumulation of sugars and sug...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:

    authors: Ramirez ML,Chulze SN,Magan N

    更新日期:2004-05-01 00:00:00

  • Cantharellus texensis sp. nov. from Texas, a southern lookalike of C. cinnabarinus revealed by tef-1 sequence data.

    abstract::This contribution to the genus Cantharellus in North America deals with the smaller, reddish pink species from the Gulf of Mexico states and eastern United States. C. texensis sp. nov. is presented as a new southern lookalike of C. cinnabarinus. The morphological species concepts are supported by newly generated molec...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/10-261

    authors: Buyck B,Cruaud C,Couloux A,Hofstetter V

    更新日期:2011-09-01 00:00:00

  • Cytological karyotyping and characterization of a 410 kb minichromosome in Nectria haematococca MPI.

    abstract::Karyotypes of the cucurbit pathogen Nectria haematococca MPI (anamorph Fusarium solani f. sp. cucurbitae race 1) was studied using the two standard strains ATCC18098 and ATCC18099. Complete separation of all chromosomes was difficult with pulsed field gel electrophoresis due to both the large size and co-migration of ...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/11-306

    authors: Mahmoud AM,Taga M

    更新日期:2012-07-01 00:00:00

  • A phylogenetic assessment of Pholiota and the new genus Pyrrhulomyces.

    abstract::Multigene data sets were assembled to evaluate the phylogeny of species attributed to the genus Pholiota sensu A.H. Sm. & Hesler. This effort included generation of just more than 200 new sequences from 19 type collections of Pholiota and recent samples from East Asia. Phylogenetic analyses reinforced the autonomous p...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.1080/00275514.2020.1816067

    authors: Tian EJ,Matheny PB

    更新日期:2020-11-11 00:00:00

  • Molecular identification of Pilobolus species from Yellowstone National Park.

    abstract::Pilobolus, a widely distributed coprophilous fungus, grows on herbivore dung. Species of Pilobolus traditionally are described with imprecise morphological characteristics potentially leading to misidentification. In this study we used PCR analysis of taxonomically informative sequences to provide more consistent spec...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/11-107

    authors: Foos KM,Sheehan KB

    更新日期:2011-11-01 00:00:00

  • Systematics of the Trichoderma harzianum species complex and the re-identification of commercial biocontrol strains.

    abstract::Trichoderma harzianum is known as a cosmopolitan, ubiquitous species associated with a wide variety of substrates. It is possibly the most commonly used name in agricultural applications involving Trichoderma, including biological control of plant diseases. While various studies have suggested that T. harzianum is a s...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/14-147

    authors: Chaverri P,Branco-Rocha F,Jaklitsch W,Gazis R,Degenkolb T,Samuels GJ

    更新日期:2015-05-01 00:00:00

  • Notes on Amanita section Caesareae from Malaysia.

    abstract::Some Amanita specimens collected from Malaysia are critically investigated by morphological examination and molecular analysis of two gene fragments, the nuc rDNA partial 28S (28S) gene and the internal transcriber spacer (ITS1-5.8S-ITS2 = ITS) regions. Six phylogenetic species of Amanita section Caesareae are recogni...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.1080/00275514.2017.1394789

    authors: Tang LP,Lee SS,Zeng NK,Cai Q,Zhang P,Yang ZL

    更新日期:2017-07-01 00:00:00

  • Botrytis fabiopsis, a new species causing chocolate spot of broad bean in central China.

    abstract::The current study was conducted to identify Botrytis spp. isolated from symptomatic broad bean plants grown in Hubei Province, China. Among 184 Botrytis strains, three distinct species, B. cinerea, B. fabae and a previously undescribed Botrytis sp., were identified based on morphology of colonies, sclerotia and conidi...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/09-217

    authors: Zhang J,Wu MD,Li GQ,Yang L,Yu L,Jiang DH,Huang HC,Zhuang WY

    更新日期:2010-09-01 00:00:00

  • Trichoderma asperellum sensu lato consists of two cryptic species.

    abstract::Analysis of a worldwide collection of strains of Trichoderma asperellum sensu lato using multilocus genealogies of four genomic regions (tef1, rpb2, act, ITS1, 2 and 5.8s rRNA), sequence polymorphism-derived (SPD) markers, matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS) of t...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/09-243

    authors: Samuels GJ,Ismaiel A,Bon MC,De Respinis S,Petrini O

    更新日期:2010-07-01 00:00:00

  • Kabatiella bupleuri sp. nov. (Dothideales), a pleomorphic epiphyte and endophyte of the Mediterranean plant Bupleurum gibraltarium (Apiaceae).

    abstract::Bupleurum gibraltarium is an evergreen shrub endemic to southern Spain and northern Algeria and Morocco. We have collected and cultured an undescribed Kabatiella species that is consistently associated with the flower rachises and leaves of B. gibraltarium in the province of Granada. The fungus forms melanized acervul...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/12-003

    authors: Bills GF,Menéndez VG,Platas G

    更新日期:2012-07-01 00:00:00

  • Morphological and molecular characterization of Phytophthora glovera sp. nov. from tobacco in Brazil.

    abstract::A root rot disease of cultivated tobacco called yellow stunt has been observed in the burley tobacco production areas of Brazil since the early 1990s. Root infecting fungi and straminipiles were isolated from the roots of diseased tobacco plants, including a semi-papillate, homothallic, slow growing Phytophthora speci...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/09-157

    authors: Abad ZG,Ivors KL,Gallup CA,Abad JA,Shew HD

    更新日期:2011-03-01 00:00:00

  • Fusarium agapanthi sp. nov., a novel bikaverin and fusarubin-producing leaf and stem spot pathogen of Agapanthus praecox (African lily) from Australia and Italy.

    abstract::This study was conducted to characterize a novel Fusarium species that caused leaf and stem spot on Agapanthus praecox (Agapanthus, African lily) in northern Italy and leaf rot and spot on the same host in Melbourne, Australia. Formally described as Fusarium agapanthi, this pathogen was analyzed using phenotypic, phyt...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/15-333

    authors: Edwards J,Auer D,de Alwis SK,Summerell B,Aoki T,Proctor RH,Busman M,O'Donnell K

    更新日期:2016-09-01 00:00:00

  • Scleroderma stellatum versus Scleroderma bermudense: the status of Scleroderma echinatum and the first record of Veligaster nitidum from the Virgin Islands.

    abstract::The type of Scleroderma stellatum from Brazil exhibits a sharp echinulate, dark brown peridium, and the type of S. bermudense from Bermuda has a peridium that is loosely woven and fibrillose, whitish to pale brownish. These characters indicate two independent species. This information is contrary to that of Guzmán in ...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.1080/15572536.2005.11832886

    authors: Guzmán G,Ramírez-Guillén F,Miller OK Jr,Lodge DJ,Baroni TJ

    更新日期:2004-11-01 00:00:00

  • Identification of novel genes associated with conidiation in Beauveria bassiana with suppression subtractive hybridization.

    abstract::The conidiation of the entomopathogenic fungus Beauveria bassiana (Hyphomycete) is a complex process that involves the stage- and cell-type-specific expression of hundreds of genes. The suppression subtractive hybridization method was used to target genes involved in conidiation. Seventeen genes were cloned that poten...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/mycologia.100.1.20

    authors: Wu J,Ridgway HJ,Carpenter MA,Glare TR

    更新日期:2008-01-01 00:00:00

  • Lophodermium macci sp. nov., a new species on senesced foliage of five-needle pines.

    abstract::The new species Lophodermium macci is described. It is similar in its morphology, habitat, geographic range and ecology to L. pini-excelsae, L. staleyi and L. nitens and often is misidentified as L. pinastri on Pinus strobus in herbaria. A modified technique was used to extract DNA from minute ascomata on herbarium sp...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.1080/15572536.2005.11832876

    authors: Sokolski S,Piché Y,Bérubé JA

    更新日期:2004-11-01 00:00:00

  • Interspecific mitochondrial DNA restriction fragment length polymorphisms in Aspergillus section Flavi.

    abstract::Mitochondrial DNA restriction fragment length polymorphisms (RFLPs) are described for 64 isolates, representing 11 species of Aspergillus section Flavi. Mitochondrial DNA haplotypes were identified following digestion of total cellular DNA with the restriction enzymes HaeIII, AseI, or DraI. In general, isolates of the...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:

    authors: Quirk JT,Kupinski JM

    更新日期:2002-11-01 00:00:00

  • Tubariomyces, a new genus of Inocybaceae from the Mediterranean region.

    abstract::The taxonomic position of Inocybe inexpectata is reconsidered on the basis of new molecular and morphological data from four published records. Up to three species can be recognized to which the name I. inexpectata has been applied. In addition to distinct morphological features present in this lineage it is proposed ...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/10-041

    authors: Alvarado P,Manjón JL,Matheny PB,Esteve-Raventós F

    更新日期:2010-11-01 00:00:00

  • High diversity of vegetative compatibility types in Cryphonectria parasitica in Japan and China.

    abstract::We found high diversity of vegetative compatibility (vc) types in native populations of the chestnut blight fungus, Cryphonectria parasitica, in Japan and China; almost every isolate was in a unique vc type. In Japan we found 71 vc types in a sample of 79 isolates pooled from six populations. Within two populations in...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/mycologia.99.2.279

    authors: Liu YC,Milgroom MG

    更新日期:2007-03-01 00:00:00

  • Cultural characterization and chlamydospore function of the Ganodermataceae present in the eastern United States.

    abstract::The cultural characteristics of fungi can provide useful information for studying the biology and ecology of a group of closely related species, but these features are often overlooked in the order Polyporales. Optimal temperature and growth rate data can also be of utility for strain selection of cultivated fungi suc...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.1080/00275514.2018.1543509

    authors: Loyd AL,Linder ER,Smith ME,Blanchette RA,Smith JA

    更新日期:2019-01-01 00:00:00

  • Periconia variicolor sp. nov., a new species from Puerto Rico.

    abstract::Periconia variicolor was isolated from water of an evaporation pond used for salt production on the southwestern coast of Puerto Rico. On the basis of cultural and morphological characteristics and ITS sequence it is describe as a new species of Periconia. ...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/mycologia.99.3.482

    authors: Cantrell SA,Hanlin RT,Emiliano A

    更新日期:2007-05-01 00:00:00

  • A new species and new records of Cercophora from Argentina.

    abstract::Three species of Cercophora were found during a survey of the biodiversity of microfungi in northwest Argentina. Cercophora argentina possesses a unique combination of morphological characters and is described as a new species, while C. costaricensis and C. solaris are reported as new records for Argentina. Other spec...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/11-005

    authors: Del Valle Catania M,Romero AI,Huhndorf SM,Miller AN

    更新日期:2011-11-01 00:00:00

  • A Samoan Hebeloma with phylogenetic ties to the western Pacific.

    abstract::Hebeloma ifeleletorum is described as a new species from American Samoa. Based on analyses of ITS and combined nLSU-ITS datasets H. ifeleletorum clusters with but is distinct from described species that have been placed in the genus Anamika by some. The phylogenetic relationship of H. ifeleletorum to the genus Anamika...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/14-047

    authors: Kropp BR

    更新日期:2015-01-01 00:00:00

  • Purification and properties of exo-inulinases from Penicillium janczewskii growing on distinct carbon sources.

    abstract::Penicillium janczewskii, isolated from the rhizosphere of Vernonia herbacea, grows rapidly on media containing either sucrose or inulin, although inulin more than sucrose induced the production of inulinases. Three different extracellular beta-fructofuranosidases (two inulinases and one invertase) were purified from f...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/mycologia.99.4.493

    authors: Pessoni RA,Braga MR,Figueiredo-Ribeiro Rde C

    更新日期:2007-07-01 00:00:00

  • Spatial analysis of within-population microsatellite variability reveals restricted gene flow in the Pacific golden chanterelle (Cantharellus formosus).

    abstract::We examined the within-population genetic structure of the Pacific golden chanterelle (Cantharellus formosus) in a 50 y old forest stand dominated by Douglas-fir (Pseudotsuga menziesii) and western hemlock (Tsuga heterophylla) with spatial autocorrelation analysis. We tested the null hypothesis that multilocus genotyp...

    journal_title:Mycologia

    pub_type: 杂志文章

    doi:10.3852/mycologia.98.2.250

    authors: Dunham SM,O'Dell TE,Molina R

    更新日期:2006-03-01 00:00:00