Redox control of protein-DNA interactions: from molecular mechanisms to significance in signal transduction, gene expression, and DNA replication.

Abstract:

:Protein-DNA interactions play a key role in the regulation of major cellular metabolic pathways, including gene expression, genome replication, and genomic stability. They are mediated through the interactions of regulatory proteins with their specific DNA-binding sites at promoters, enhancers, and replication origins in the genome. Redox signaling regulates these protein-DNA interactions using reactive oxygen species and reactive nitrogen species that interact with cysteine residues at target proteins and their regulators. This review describes the redox-mediated regulation of several master regulators of gene expression that control the induction and suppression of hundreds of genes in the genome, regulating multiple metabolic pathways, which are involved in cell growth, development, differentiation, and survival, as well as in the function of the immune system and cellular response to intracellular and extracellular stimuli. It also discusses the role of redox signaling in protein-DNA interactions that regulate DNA replication. Specificity of redox regulation is discussed, as well as the mechanisms providing several levels of redox-mediated regulation, from direct control of DNA-binding domains through the indirect control, mediated by release of negative regulators, regulation of redox-sensitive protein kinases, intracellular trafficking, and chromatin remodeling.

journal_name

Antioxid Redox Signal

authors

Shlomai J

doi

10.1089/ars.2009.3029

subject

Has Abstract

pub_date

2010-11-01 00:00:00

pages

1429-76

issue

9

eissn

1523-0864

issn

1557-7716

journal_volume

13

pub_type

杂志文章,评审
  • Heme-Oxygenase-1.

    abstract::This Forum issue "Heme Oxygenase" (HO) includes original research articles and reviews that are aimed at understanding the role of HO-1 in several pathophysiological conditions, specially addressing those involving inflammation and oxidative damage. Overall, the seven contributions of this Forum highlight the dual rol...

    journal_title:Antioxidants & redox signaling

    pub_type: 评论,社论

    doi:10.1089/ars.2020.8065

    authors: Facchinetti MM

    更新日期:2020-06-10 00:00:00

  • Cell-death-associated molecular patterns as determinants of cancer immunogenicity.

    abstract:SIGNIFICANCE:Accumulating evidence indicates that the success of some anticancer treatments (select chemotherapies or radiotherapy or trastuzumab) could be related to the stimulation of an anticancer immune response through the induction of an immunogenic tumor cell death (ICD). RECENT ADVANCES:Preclinical data reveal...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2012.5133

    authors: Ladoire S,Hannani D,Vetizou M,Locher C,Aymeric L,Apetoh L,Kepp O,Kroemer G,Ghiringhelli F,Zitvogel L

    更新日期:2014-03-01 00:00:00

  • Omega-3 Polyunsaturated Fatty Acids: Versatile Roles in Blood Pressure Regulation.

    abstract:: Significance: Hypertension is characterized as the imbalance of vasoconstriction and vasodilatation. Hypertension is influenced by genetic variation and environmental risk factors, such as unhealthy diet. Clinical trial results suggest that increasing intake of foods rich ...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2020.8108

    authors: Wang H,Li Q,Zhu Y,Zhang X

    更新日期:2020-06-12 00:00:00

  • The degradative inventory of the cell: proteomic insights.

    abstract:SIGNIFICANCE:Protein degradation has been identified as being deregulated in numerous human diseases. Hence, proteins involved in proteasomal as well as lysosomal degradation are regarded as interesting potential drug targets and are thoroughly investigated in clinical studies. RECENT ADVANCES:Technical advances in th...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2011.4393

    authors: Engelke R,Becker AC,Dengjel J

    更新日期:2012-09-01 00:00:00

  • Dual involvement of coenzyme Q10 in redox signaling and inhibition of death signaling in the rat heart mitochondria.

    abstract::Coenzyme Q10 (CoQ) has long been utilized as a cardioprotective agent in various heart diseases. One of the most important mechanisms by which CoQ exerts cardioprotection is aerobic ATP production as a mobile electron carrier in the mitochondrial electron transfer chain. The ability of CoQ to afford myocardial protect...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/152308601750100588

    authors: Yamamura T,Otani H,Nakao Y,Hattori R,Osako M,Imamura H,Das DK

    更新日期:2001-02-01 00:00:00

  • NADPH oxidase drives cytokine and neurotoxin release from microglia and macrophages in response to HIV-Tat.

    abstract::Previous reports have shown that the human immunodeficiency virus (HIV) regulatory protein Tat has both pro-oxidant and pro-inflammatory properties, suggesting that Tat might contribute to the neurological complications of HIV. However, the intracellular mechanisms whereby Tat triggers free radical production and infl...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2008.2097

    authors: Turchan-Cholewo J,Dimayuga VM,Gupta S,Gorospe RM,Keller JN,Bruce-Keller AJ

    更新日期:2009-02-01 00:00:00

  • Antioxidants: strategies for interventions in aging and age-related diseases. A workshop sponsored by the National Institute on Aging and by the Office of Dietary Supplements.

    abstract::The role of free radicals in aging has been a long-standing theory that has now been extended to include both reactive oxygen and nitrogen species. The original concepts that overwhelming oxidative stress depleted antioxidants and thus damaged intracellular targets is being supplanted by the hypothesis that the reacti...

    journal_title:Antioxidants & redox signaling

    pub_type: 社论

    doi:10.1089/15230860050192143

    authors: Darley-Usmar V,Starke-Reed PE

    更新日期:2000-10-01 00:00:00

  • Superoxide-related signaling cascade mediates nuclear factor-kappaB activation in acute inflammation.

    abstract::The nuclear factor-kappaB (NF-kappaB) is a transcription factor that plays a pivotal role in the induction of genes involved in physiological processes, as well as in the response to inflammation. In this study, we used a selective nonpeptidyl superoxide dismutase mimetic, M40403, to investigate the role of superoxide...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/1523086041361659

    authors: Cuzzocrea S,Pisano B,Dugo L,Ianaro A,Ndengele M,Salvemini D

    更新日期:2004-08-01 00:00:00

  • Homocysteine and redox signaling.

    abstract::Homocysteine is a thiol-containing amino acid that has gained notoriety because its elevation in the plasma is correlated with complex and multifactorial diseases, including cardiovascular diseases, neurodegenerative diseases, and neural tube defects. Homocysteine is redox-active, and its toxic effects have been frequ...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2005.7.547

    authors: Zou CG,Banerjee R

    更新日期:2005-05-01 00:00:00

  • Axonal mitochondrial clusters containing mutant SOD1 in transgenic models of ALS.

    abstract::We studied the subcellular distribution of mitochondria and superoxide dismutase-1 (SOD1) in whole mounts of microdissected motor axons of rats expressing the ALS-linked SOD1-G93A mutation. The rationale was to determine whether physical interactions between the enzyme and mitochondria were linked to the axonopathy of...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2009.2614

    authors: Sotelo-Silveira JR,Lepanto P,Elizondo V,Horjales S,Palacios F,Martinez-Palma L,Marin M,Beckman JS,Barbeito L

    更新日期:2009-07-01 00:00:00

  • The Broad-Spectrum Antimicrobial Potential of [Mn(CO)4(S2CNMe(CH2CO2H))], a Water-Soluble CO-Releasing Molecule (CORM-401): Intracellular Accumulation, Transcriptomic and Statistical Analyses, and Membrane Polarization.

    abstract:AIMS:Carbon monoxide (CO)-releasing molecules (CORMs) are candidates for animal and antimicrobial therapeutics. We aimed to probe the antimicrobial potential of a novel manganese CORM. RESULTS:[Mn(CO)4S2CNMe(CH2CO2H)], CORM-401, inhibits growth of Escherichia coli and several antibiotic-resistant clinical pathogens. C...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2017.7239

    authors: Wareham LK,McLean S,Begg R,Rana N,Ali S,Kendall JJ,Sanguinetti G,Mann BE,Poole RK

    更新日期:2018-05-10 00:00:00

  • Synaptic Activity Protects Neurons Against Calcium-Mediated Oxidation and Contraction of Mitochondria During Excitotoxicity.

    abstract:AIMS:Excitotoxicity triggered by extrasynaptic N-methyl-d-aspartate-type glutamate receptors has been implicated in many neurodegenerative conditions, including Alzheimer's disease, Huntington's disease, amyotrophic lateral sclerosis, and stroke. Mitochondrial calcium overload leading to mitochondrial dysfunction repre...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2017.7092

    authors: Depp C,Bas-Orth C,Schroeder L,Hellwig A,Bading H

    更新日期:2018-10-20 00:00:00

  • Mechanotransduction in the endothelium: role of membrane proteins and reactive oxygen species in sensing, transduction, and transmission of the signal with altered blood flow.

    abstract:SIGNIFICANCE:Changes in shear stress associated with alterations in blood flow initiate a signaling cascade that modulates the vascular phenotype. Shear stress is "sensed" by the endothelium via a mechanosensitive complex on the endothelial cell (EC) membrane that has been characterized as a "mechanosome" consisting of...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2013.5624

    authors: Chatterjee S,Fisher AB

    更新日期:2014-02-20 00:00:00

  • Mitochondrial regulation of cell cycle and proliferation.

    abstract::Eukaryotic mitochondria resulted from symbiotic incorporation of α-proteobacteria into ancient archaea species. During evolution, mitochondria lost most of the prokaryotic bacterial genes and only conserved a small fraction including those encoding 13 proteins of the respiratory chain. In this process, many functions ...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2011.4085

    authors: Antico Arciuch VG,Elguero ME,Poderoso JJ,Carreras MC

    更新日期:2012-05-15 00:00:00

  • Pharmacology of caspase inhibitors in rabbit cardiomyocytes subjected to metabolic inhibition and recovery.

    abstract::Protection of ischemic myocardium is an important unmet need in reperfusion therapy of acute myocardial infarction. Myocardial ischemia and reperfusion induce necrosis and apoptosis in cardiomyocytes. Caspase processing and activation are critical steps in most receptor and nonreceptor pathways of apoptosis. Caspase i...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/152308601750100605

    authors: Li HL,Karwatowska-Prokopczuk E,Mutomba M,Wu J,Karanewsky D,Valentino K,Engler RL,Gottlieb RA

    更新日期:2001-02-01 00:00:00

  • The crucial role of early mitochondrial injury in L-lysine-induced acute pancreatitis.

    abstract:AIMS:Large doses of intraperitoneally injected basic amino acids, L-arginine, or L-ornithine, induce acute pancreatitis in rodents, although the mechanisms mediating pancreatic toxicity remain unknown. Another basic amino acid, L-lysine, was also shown to cause pancreatic acinar cell injury. The aim of the study was to...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2011.4065

    authors: Biczó G,Hegyi P,Dósa S,Shalbuyeva N,Berczi S,Sinervirta R,Hracskó Z,Siska A,Kukor Z,Jármay K,Venglovecz V,Varga IS,Iványi B,Alhonen L,Wittmann T,Gukovskaya A,Takács T,Rakonczay Z Jr

    更新日期:2011-11-15 00:00:00

  • A Novel Rhynchophylline Analog, Y396, Inhibits Endothelial Dysfunction Induced by Oxidative Stress in Diabetes Through Epidermal Growth Factor Receptor.

    abstract:: Aims: Endothelial dysfunction appears in early diabetes mellitus partially because of epidermal growth factor receptor (EGFR) abnormal activation and downstream oxidative stress. The aim of this study was to determine whether Y396, a synthesized analog of rhynchophylline, ...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2018.7721

    authors: Wang ZJ,Chang LL,Wu J,Pan HM,Zhang QY,Wang MJ,Xin XM,Luo SS,Chen JA,Gu XF,Guo W,Zhu YZ

    更新日期:2020-04-10 00:00:00

  • Identification and functional studies of a new Nrf2 partner IQGAP1: a critical role in the stability and transactivation of Nrf2.

    abstract:AIMS:Nuclear factor-erythroid-related factor 2 (Nrf2) is a critical transcriptional factor that is used in regulating cellular defense against oxidative stress. This study is aimed at investigating new interacting protein partners of Nrf2 using One-strep tag pull-down coupled with LTQ Orbitrap LC/MS/MS, and at examinin...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2012.4586

    authors: Kim JH,Xu EY,Sacks DB,Lee J,Shu L,Xia B,Kong AN

    更新日期:2013-07-10 00:00:00

  • Simple biological systems for assessing the activity of superoxide dismutase mimics.

    abstract:SIGNIFICANCE:Half a century of research provided unambiguous proof that superoxide and species derived from it-reactive oxygen species (ROS)-play a central role in many diseases and degenerative processes. This stimulated the search for pharmaceutical agents that are capable of preventing oxidative damage, and methods ...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2013.5576

    authors: Tovmasyan A,Reboucas JS,Benov L

    更新日期:2014-05-20 00:00:00

  • Renal Mitochondrial Response to Low Temperature in Non-Hibernating and Hibernating Species.

    abstract:SIGNIFICANCE:Therapeutic hypothermia is commonly applied to limit ischemic injury in organ transplantation, during cardiac and brain surgery and after cardiopulmonary resuscitation. In these procedures, the kidneys are particularly at risk for ischemia/reperfusion injury (IRI), likely due to their high rate of metaboli...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2016.6705

    authors: Dugbartey GJ,Hardenberg MC,Kok WF,Boerema AS,Carey HV,Staples JF,Henning RH,Bouma HR

    更新日期:2017-09-20 00:00:00

  • H₂O₂-Activated Mitochondrial Phospholipase iPLA₂γ Prevents Lipotoxic Oxidative Stress in Synergy with UCP2, Amplifies Signaling via G-Protein-Coupled Receptor GPR40, and Regulates Insulin Secretion in Pancreatic β-Cells.

    abstract:AIMS:Pancreatic β-cell chronic lipotoxicity evolves from acute free fatty acid (FA)-mediated oxidative stress, unprotected by antioxidant mechanisms. Since mitochondrial uncoupling protein-2 (UCP2) plays antioxidant and insulin-regulating roles in pancreatic β-cells, we tested our hypothesis, that UCP2-mediated uncoupl...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2014.6195

    authors: Ježek J,Dlasková A,Zelenka J,Jabůrek M,Ježek P

    更新日期:2015-10-20 00:00:00

  • Interacting with thioredoxin-1--disease or no disease?

    abstract:SIGNIFICANCE:Many cardiovascular disorders are accompanied by a deregulated cellular redox balance resulting in elevated levels of intracellular reactive oxygen species (ROS). One major antioxidative cellular molecule is thioredoxin-1 (Trx-1). Its indispensability is demonstrated by the embryonic lethality of Trx-1 def...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2012.4822

    authors: Zschauer TC,Matsushima S,Altschmied J,Shao D,Sadoshima J,Haendeler J

    更新日期:2013-03-20 00:00:00

  • Electronic structure studies of quinones and semiquinones: accurate calculation of spin densities and electron paramagnetic resonance parameters.

    abstract::The application of electronic structure methods to the prediction of geometries, spin densities, and hyperfine couplings for biologically relevant quinones and semiquinones is reviewed. It is demonstrated that hybrid-type density functional methods are particularly suitable for such studies. Hydrogen bonding to the se...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/15230860152665000

    authors: O'Malley PJ

    更新日期:2001-10-01 00:00:00

  • Epithelial-mesenchymal transition: from molecular mechanisms, redox regulation to implications in human health and disease.

    abstract::Epithelial to mesenchymal transition (EMT) is a fundamental process, paradigmatic of the concept of cell plasticity, that leads epithelial cells to lose their polarization and specialized junctional structures, to undergo cytoskeleton reorganization, and to acquire morphological and functional features of mesenchymal-...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2009.2737

    authors: Cannito S,Novo E,di Bonzo LV,Busletta C,Colombatto S,Parola M

    更新日期:2010-06-15 00:00:00

  • Citrate synthase is a novel in vivo matrix metalloproteinase-9 substrate that regulates mitochondrial function in the postmyocardial infarction left ventricle.

    abstract:AIM:To evaluate the role of matrix metalloproteinase (MMP)-9 deletion on citrate synthase (CS) activity postmyocardial infarction (MI). RESULTS:We fractionated left ventricle (LV) samples using a differential solubility-based approach. The insoluble protein fraction was analyzed by mass spectrometry, and we identified...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2013.5411

    authors: de Castro Brás LE,Cates CA,DeLeon-Pennell KY,Ma Y,Iyer RP,Halade GV,Yabluchanskiy A,Fields GB,Weintraub ST,Lindsey ML

    更新日期:2014-11-10 00:00:00

  • Oscillatory shear stress induces mitochondrial superoxide production: implication of NADPH oxidase and c-Jun NH2-terminal kinase signaling.

    abstract::Fluid shear stress is intimately linked with vascular oxidative stress and atherosclerosis. We posited that atherogenic oscillatory shear stress (OSS) induced mitochondrial superoxide (mtO2•-) production via NADPH oxidase and c-Jun NH(2)-terminal kinase (JNK-1 and JNK-2) signaling. In bovine aortic endothelial cells, ...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2010.3645

    authors: Takabe W,Jen N,Ai L,Hamilton R,Wang S,Holmes K,Dharbandi F,Khalsa B,Bressler S,Barr ML,Li R,Hsiai TK

    更新日期:2011-09-01 00:00:00

  • Mitofusin 2 as a driver that controls energy metabolism and insulin signaling.

    abstract:SIGNIFICANCE:Mitochondrial dynamics is a complex process that impacts on mitochondrial biology. RECENT ADVANCES:Recent evidence indicates that proteins participating in mitochondrial dynamics have additional cellular roles. Mitofusin 2 (Mfn2) is a potent modulator of mitochondrial metabolism with an impact on energy m...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2014.6208

    authors: Zorzano A,Hernández-Alvarez MI,Sebastián D,Muñoz JP

    更新日期:2015-04-20 00:00:00

  • Oxidative Stress Dysregulates Protein Homeostasis Within the Male Germ Line.

    abstract:: Aims: Oxidative stress is causally linked to male reproductive pathologies, driven primarily by lipid peroxidation and an attendant production of highly reactive lipid aldehydes, such as 4-hydroxynonenal (4HNE) within the male germ line. In somatic cells, 4HNE dysregulates...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2019.7832

    authors: Cafe SL,Nixon B,Dun MD,Roman SD,Bernstein IR,Bromfield EG

    更新日期:2020-03-10 00:00:00

  • Redox control of endothelial function and dysfunction: molecular mechanisms and therapeutic opportunities.

    abstract::The endothelium is essential for the maintenance of vascular homeostasis. Central to this role is the production of endothelium-derived nitric oxide (EDNO), synthesized by the endothelial isoform of nitric oxide synthase (eNOS). Endothelial dysfunction, manifested as impaired EDNO bioactivity, is an important early ev...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2008.2027

    authors: Thomas SR,Witting PK,Drummond GR

    更新日期:2008-10-01 00:00:00

  • The redox regulation of PI 3-kinase-dependent signaling.

    abstract::Signal transduction via PI 3-kinases plays an important role in regulating the cellular processes of cell growth, survival, proliferation, and motility. The stimulated generation of reactive oxygen species is a necessary component of the signal transduction mechanisms by which many growth factors and cytokines activat...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2006.8.1765

    authors: Leslie NR

    更新日期:2006-09-01 00:00:00