The degradative inventory of the cell: proteomic insights.

Abstract:

SIGNIFICANCE:Protein degradation has been identified as being deregulated in numerous human diseases. Hence, proteins involved in proteasomal as well as lysosomal degradation are regarded as interesting potential drug targets and are thoroughly investigated in clinical studies. RECENT ADVANCES:Technical advances in the field of quantitative mass spectrometry (MS)-based proteomics allow for detailed investigations of protein degradation dynamics and identifications of responsible protein-protein interaction networks enabling a systematic analysis of the degradative inventory of the cell and its underlying molecular mechanisms. CRITICAL ISSUES:In the current review we outline recent technical advances and their limitations in MS-based proteomics and discuss their use for the analysis of protein dynamics involved in degradation processes. FUTURE DIRECTIONS:In the next years the analysis of crosstalk between different posttranslational modifications (PTMs) will be a major focus of MS-based proteomics studies. Increasing evidence highlights the complexity of PTMs with positive and negative feedbacks being discovered. In this regard, the generation of absolute quantitative proteomic data will be essential for theoretical scientists to construct predictive network models that constitute a valuable tool for fast hypothesis testing and for explaining underlying molecular mechanisms.

journal_name

Antioxid Redox Signal

authors

Engelke R,Becker AC,Dengjel J

doi

10.1089/ars.2011.4393

subject

Has Abstract

pub_date

2012-09-01 00:00:00

pages

803-12

issue

5

eissn

1523-0864

issn

1557-7716

journal_volume

17

pub_type

杂志文章,评审
  • Manganese Superoxide Dismutase Expression Regulates the Switch Between an Epithelial and a Mesenchymal-Like Phenotype in Breast Carcinoma.

    abstract:AIM:Epithelial-mesenchymal transition (EMT) is characterized by the acquisition of invasive fibroblast-like morphology by epithelial cells that are highly polarized. EMT is recognized as a crucial mechanism in cancer progression and metastasis. In this study, we sought to assess the involvement of manganese superoxide ...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2015.6524

    authors: Loo SY,Hirpara JL,Pandey V,Tan TZ,Yap CT,Lobie PE,Thiery JP,Goh BC,Pervaiz S,Clément MV,Kumar AP

    更新日期:2016-08-20 00:00:00

  • Overexpression of mitochondrial ferritin sensitizes cells to oxidative stress via an iron-mediated mechanism.

    abstract::Mitochondrial ferritin (MtFt) is a newly identified H-ferritin-like protein expressed only in mitochondria. Previous studies have shown that its overexpression markedly affects intracellular iron homeostasis and rescues defects caused by frataxin deficiency. To assess how MtFt exerts its function under oxidative stres...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2008.2306

    authors: Lu Z,Nie G,Li Y,Soe-Lin S,Tao Y,Cao Y,Zhang Z,Liu N,Ponka P,Zhao B

    更新日期:2009-08-01 00:00:00

  • Hyperglycemia and glycation in diabetic complications.

    abstract::Diabetes mellitus is a multifactorial disease, classically influenced by genetic determinants of individual susceptibility and by environmental accelerating factors, such as lifestyle. It is considered a major health concern,as its incidence is increasing at an alarming rate, and the high invalidating effects of its l...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2009.2484

    authors: Negre-Salvayre A,Salvayre R,Augé N,Pamplona R,Portero-Otín M

    更新日期:2009-12-01 00:00:00

  • Neuroglobin As Key Mediator in the 17β-Estradiol-Induced Antioxidant Cell Response to Oxidative Stress.

    abstract:: Aims: Nuclear factor (erythroid-derived 2)-like-2 factor (NRF-2) is a transcription factor well known to provide an advantage for cancer growth and survival regulating the cellular redox pathway. In breast cancer cells, we recently identified the monomeric heme-globin neur...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2019.7870

    authors: Solar Fernandez V,Cipolletti M,Ascenzi P,Marino M,Fiocchetti M

    更新日期:2020-02-01 00:00:00

  • The implication of cancer progenitor cells and the role of epigenetics in the development of novel therapeutic strategies for chronic myeloid leukemia.

    abstract:SIGNIFICANCE:Chronic myeloid leukemia (CML) involves the malignant transformation of hematopoietic stem cells, defined largely by the Philadelphia chromosome and expression of the breakpoint cluster region-Abelson (BCR-ABL) oncoprotein. Pharmacological tyrosine kinase inhibitors (TKIs), including imatinib mesylate, hav...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2014.6096

    authors: Tortorella SM,Hung A,Karagiannis TC

    更新日期:2015-06-01 00:00:00

  • Hydrogen Sulfide Mitigates Myocardial Infarction via Promotion of Mitochondrial Biogenesis-Dependent M2 Polarization of Macrophages.

    abstract:AIMS:Macrophages are of key importance for tissue repair after myocardial infarction (MI). Hydrogen sulfide (H2S) has been shown to exert cardioprotective effects in MI. However, the mechanisms by which H2S modulates cardiac remodeling and repair post-MI remain to be clarified. RESULTS:In our current study, we showed ...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2015.6577

    authors: Miao L,Shen X,Whiteman M,Xin H,Shen Y,Xin X,Moore PK,Zhu YZ

    更新日期:2016-08-10 00:00:00

  • Early, but not late onset estrogen replacement therapy prevents oxidative stress and metabolic alterations caused by ovariectomy.

    abstract:AIMS:The usefulness of estrogen replacement therapy (ERT) in preventing oxidative stress associated with menopause is controversial. We aimed to study if there is a critical time window for effective treatment of the effects of ovariectomy with estrogens at the molecular, metabolic, and cellular level. RESULTS:Our mai...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2012.5112

    authors: López-Grueso R,Gambini J,Abdelaziz KM,Monleón D,Díaz A,El Alami M,Bonet-Costa V,Borrás C,Viña J

    更新日期:2014-01-10 00:00:00

  • Oxidative stress stimulates autophagic flux during ischemia/reperfusion.

    abstract::Autophagy is a bulk degradation process in which cytosolic proteins and organelles are degraded through lysosomes. To evaluate autophagic flux in cardiac myocytes, we generated adenovirus and cardiac-specific transgenic mice harboring tandem fluorescent mRFP-GFP-LC3. Starvation significantly increased the number of mR...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2010.3488

    authors: Hariharan N,Zhai P,Sadoshima J

    更新日期:2011-06-01 00:00:00

  • Pseudomonas aeruginosa pyocyanin induces neutrophil death via mitochondrial reactive oxygen species and mitochondrial acid sphingomyelinase.

    abstract:AIMS:Pulmonary infections with Pseudomonas aeruginosa are a serious clinical problem and are often lethal. Because many strains of P. aeruginosa are resistant to antibiotics, therapeutic options are limited. Neutrophils play an important role in the host's early acute defense against pulmonary P. aeruginosa. Therefore,...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2014.5979

    authors: Managò A,Becker KA,Carpinteiro A,Wilker B,Soddemann M,Seitz AP,Edwards MJ,Grassmé H,Szabò I,Gulbins E

    更新日期:2015-05-01 00:00:00

  • Hemoglobin can attenuate hydrogen peroxide-induced oxidative stress by acting as an antioxidative peroxidase.

    abstract::Hemoglobin is considered a potentially toxic molecule when released from erythrocytes during hemolysis, inflammation, or tissue injury. The mechanisms of toxicity involve reduced nitric oxide bioavailability and oxidative processes both occurring at the heme prosthetic groups. When the endogenous oxidant H(2)O(2) reac...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2009.2826

    authors: Widmer CC,Pereira CP,Gehrig P,Vallelian F,Schoedon G,Buehler PW,Schaer DJ

    更新日期:2010-02-01 00:00:00

  • Contribution of Oxidative Stress and Impaired Biogenesis of Pancreatic β-Cells to Type 2 Diabetes.

    abstract:: Significance: Type 2 diabetes development involves multiple changes in β-cells, related to the oxidative stress and impaired redox signaling, beginning frequently by sustained overfeeding due to the resulting lipotoxicity and glucotoxicity. Uncovering relationships among t...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2018.7656

    authors: Ježek P,Jabůrek M,Plecitá-Hlavatá L

    更新日期:2019-10-01 00:00:00

  • Ethyl ferulate, a lipophilic polyphenol, induces HO-1 and protects rat neurons against oxidative stress.

    abstract::In the CNS, the heme oxygenase (HO) system has been reported to be active and to operate as a fundamental defensive mechanism for neurons exposed to an oxidant challenge. We have recently shown that both curcumin and caffeic acid phenethyl ester, two phenolic natural compounds, potently induce HO-1 expression and acti...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2004.6.811

    authors: Scapagnini G,Butterfield DA,Colombrita C,Sultana R,Pascale A,Calabrese V

    更新日期:2004-10-01 00:00:00

  • Alzheimer's disease: a lesson from mitochondrial dysfunction.

    abstract::Extensive literature exists supporting a role for mitochondrial dysfunction and oxidative damage in the pathogenesis of Alzheimer's disease. Mitochondria are a major source of intracellular reactive oxygen species and are particularly vulnerable to oxidative stress. This review discusses evidence supporting the notion...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2007.1703

    authors: Moreira PI,Santos MS,Oliveira CR

    更新日期:2007-10-01 00:00:00

  • Reactive nitrogen and oxygen intermediates and bacterial defenses: unusual adaptations in Mycobacterium tuberculosis.

    abstract::The production of reactive oxygen and reactive nitrogen intermediates is an important host defense mechanism mediated in response to infection by bacterial pathogens. Not surprisingly, intracellular pathogens have evolved numerous defense strategies to protect themselves against the damaging effects of these agents. I...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/152308602753625924

    authors: Zahrt TC,Deretic V

    更新日期:2002-02-01 00:00:00

  • Age-related changes in redox signaling and VSMC function.

    abstract::Epidemiological studies have shown that advancing age is associated with an increased prevalence of cardiovascular disease (CVD). Vascular smooth muscle cells (VSMC) comprise the major arterial cell population, and changes in VSMC behavior, function, and redox status with age contribute to alterations in vascular remo...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2009.2854

    authors: Li M,Fukagawa NK

    更新日期:2010-03-01 00:00:00

  • Aging exacerbates hydrogen peroxide-induced alteration of vascular reactivity in rats.

    abstract::Reactive oxygen species (ROS) such as superoxide anion (O2-*) and hydrogen peroxide (H2O2) can be produced by vascular endothelium and smooth muscle cells under diverse physiological and pathophysiological situations. These species are known to exert various deleterious effects by which they might induce changes in va...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2000.2.2-363

    authors: Tanguy S,Boucher F,Toufektsian MC,Besse S,de Leiris J

    更新日期:2000-07-01 00:00:00

  • Oxidative damage compromises energy metabolism in the axonal degeneration mouse model of X-adrenoleukodystrophy.

    abstract:AIMS:Chronic metabolic impairment and oxidative stress are associated with the pathogenesis of axonal dysfunction in a growing number of neurodegenerative conditions. To investigate the intertwining of both noxious factors, we have chosen the mouse model of adrenoleukodystrophy (X-ALD), which exhibits axonal degenerati...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2010.3877

    authors: Galino J,Ruiz M,Fourcade S,Schlüter A,López-Erauskin J,Guilera C,Jove M,Naudi A,García-Arumí E,Andreu AL,Starkov AA,Pamplona R,Ferrer I,Portero-Otin M,Pujol A

    更新日期:2011-10-15 00:00:00

  • Targeting and regulation of reactive oxygen species generation by Nox family NADPH oxidases.

    abstract::Nox family NADPH oxidases serve a variety of functions requiring reactive oxygen species (ROS) generation, including antimicrobial defense, biosynthetic processes, oxygen sensing, and redox-based cellular signaling. We explored targeting, assembly, and activation of several Nox family oxidases, since ROS production ap...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2009.2637

    authors: Leto TL,Morand S,Hurt D,Ueyama T

    更新日期:2009-10-01 00:00:00

  • The intermembrane space of mitochondria.

    abstract::Mitochondria contain two aqueous compartments: the matrix and the intermembrane space. Whereas many of the biologic functions of the matrix were well characterized in the past, it became clear very recently that the intermembrane space plays a pivotal role in the coordination of mitochondrial activities with other cel...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2009.3063

    authors: Herrmann JM,Riemer J

    更新日期:2010-11-01 00:00:00

  • The Incomplete Glutathione Puzzle: Just Guessing at Numbers and Figures?

    abstract:SIGNIFICANCE:Glutathione metabolism is comparable to a jigsaw puzzle with too many pieces. It is supposed to comprise (i) the reduction of disulfides, hydroperoxides, sulfenic acids, and nitrosothiols, (ii) the detoxification of aldehydes, xenobiotics, and heavy metals, and (iii) the synthesis of eicosanoids, steroids,...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2017.7123

    authors: Deponte M

    更新日期:2017-11-20 00:00:00

  • The Broad-Spectrum Antimicrobial Potential of [Mn(CO)4(S2CNMe(CH2CO2H))], a Water-Soluble CO-Releasing Molecule (CORM-401): Intracellular Accumulation, Transcriptomic and Statistical Analyses, and Membrane Polarization.

    abstract:AIMS:Carbon monoxide (CO)-releasing molecules (CORMs) are candidates for animal and antimicrobial therapeutics. We aimed to probe the antimicrobial potential of a novel manganese CORM. RESULTS:[Mn(CO)4S2CNMe(CH2CO2H)], CORM-401, inhibits growth of Escherichia coli and several antibiotic-resistant clinical pathogens. C...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2017.7239

    authors: Wareham LK,McLean S,Begg R,Rana N,Ali S,Kendall JJ,Sanguinetti G,Mann BE,Poole RK

    更新日期:2018-05-10 00:00:00

  • The free radical theory of aging.

    abstract::Aging is the accumulation of changes that increase the risk of death. Aging changes can be attributed to development, genetic defects, the environment, disease, and an inborn process: the aging process. The latter is the major risk factor for disease and death after age 28 in the developed countries. In these countrie...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/152308603770310202

    authors: Harman D

    更新日期:2003-10-01 00:00:00

  • Thioredoxin networks in the malarial parasite Plasmodium falciparum.

    abstract::The intraerythrocytic protozoan parasite Plasmodium falciparum is responsible for more than 500 million clinical cases of tropical malaria annually. Although exposed to high fluxes of reactive oxygen species, Plasmodium lacks the antioxidant enzymes catalase and glutathione peroxidase. Thus, the parasite depends on th...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2006.8.1227

    authors: Nickel C,Rahlfs S,Deponte M,Koncarevic S,Becker K

    更新日期:2006-07-01 00:00:00

  • Dimethylarginine Dimethylaminohydrolase 1 Deficiency Induces the Epithelial to Mesenchymal Transition in Renal Proximal Tubular Epithelial Cells and Exacerbates Kidney Damage in Aged and Diabetic Mice.

    abstract:AIMS:Asymmetric dimethylarginine (ADMA), an endogenous inhibitor of nitric oxide synthase, is mainly degraded by dimethylarginine dimethylaminohydrolase (DDAH). Emerging evidence suggests that plasma ADMA accumulation and DDAH1 activity/expression reduction are linked to chronic kidney disease (CKD) pathology, but the ...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2017.7022

    authors: Shi L,Zhao C,Wang H,Lei T,Liu S,Cao J,Lu Z

    更新日期:2017-12-01 00:00:00

  • Immunohistochemical localization of thioredoxin and glutaredoxin in mouse embryos and fetuses.

    abstract::Although oxygen is essential for promoting energy metabolism and for enhancing cell proliferation, early mouse embryos are very sensitive to high oxygen concentration. Because the tissue-specificity and sequential changes of the expression of antioxidative enzymes in rodent embryos have not been investigated systemati...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2000.2.4-653

    authors: Kobayashi M,Nakamura H,Yodoi J,Shiota K

    更新日期:2000-01-01 00:00:00

  • Targeting inflammation and oxidative stress in atrial fibrillation: role of 3-hydroxy-3-methylglutaryl-coenzyme a reductase inhibition with statins.

    abstract:SIGNIFICANCE:Atrial fibrillation (AF) is a burgeoning health-care problem, and the currently available therapeutic armamentarium is barely efficient. Experimental and clinical evidence implicates inflammation and myocardial oxidative stress in the pathogenesis of AF. RECENT ADVANCES:Local and systemic inflammation has...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2013.5542

    authors: Pinho-Gomes AC,Reilly S,Brandes RP,Casadei B

    更新日期:2014-03-10 00:00:00

  • Signaling by the arc two-component system provides a link between the redox state of the quinone pool and gene expression.

    abstract::The Arc two-component system is a complex signal transduction system that plays a key role in regulating energy metabolism at the level of transcription in bacteria. This system comprises the ArcB protein, a tripartite membrane-associated sensor kinase, and the ArcA protein, a typical response regulator. Under anoxic ...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2006.8.781

    authors: Malpica R,Sandoval GR,Rodríguez C,Franco B,Georgellis D

    更新日期:2006-05-01 00:00:00

  • Reactive Oxygen Species-Dependent c-Fos/Activator Protein 1 Induction Upregulates Heme Oxygenase-1 Expression by Bradykinin in Brain Astrocytes.

    abstract::Heme oxygenase-1 (HO-1) plays a crucial role in tissue pathological changes such as brain injuries. Our previous studies have demonstrated that bradykinin (BK) induces the expression of several inflammatory proteins, including matrix metalloproteinase-9 and COX-2, via mitogen-activated protein kinases and nuclear fact...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章

    doi:10.1089/ars.2009.2957

    authors: Hsieh HL,Wang HH,Wu CY,Yang CM

    更新日期:2010-12-15 00:00:00

  • The thioredoxin system in neonatal lung disease.

    abstract:SIGNIFICANCE:Fetal lung development takes place in hypoxia meaning that premature birth is hyperoxia for the prematurely born infant. The most common respiratory morbidity afflicting premature infants is bronchopulmonary dysplasia (BPD). Pathophysiologically, BPD represents the impact of injury, including O2 toxicity, ...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2013.5782

    authors: Tipple TE

    更新日期:2014-11-01 00:00:00

  • Cardiac stem cells: biology and clinical applications.

    abstract:SIGNIFICANCE:Heart disease is the primary cause of death in the industrialized world. Cardiac failure is dictated by an uncompensated reduction in the number of viable and fully functional cardiomyocytes. While current pharmacological therapies alleviate the symptoms associated with cardiac deterioration, heart transpl...

    journal_title:Antioxidants & redox signaling

    pub_type: 杂志文章,评审

    doi:10.1089/ars.2014.5875

    authors: Goichberg P,Chang J,Liao R,Leri A

    更新日期:2014-11-10 00:00:00