Soil functional diversity analysis of a bauxite-mined restoration chronosequence.

Abstract:

:Soil microorganisms are sensitive to environmental perturbations such that changes in microbial community structure and function can provide early signs of anthropogenic disturbances and even predict restoration success. We evaluated the bacterial functional diversity of un-mined and three chronosequence sites at various stages of rehabilitation (0, 10, and 20 years old) located in the Mocho Mountains of Jamaica. Samples were collected during the dry and wet seasons and analyzed for metal concentrations, microbial biomass carbon, bacterial numbers, and functional responses of soil microbiota using community-level physiological profile (CLPP) assays. Regardless of the season, un-mined soils consisted of higher microbial biomass and numbers than any of the rehabilitated sites. Additionally, the number and rate of substrates utilized and substrate evenness (the distribution of color development between the substrates) were significantly greater in the un-mined soils with carbohydrates being preferentially utilized than amino acids, polymers, carboxylic acids, and esters. To some extent, functional responses varied with the seasons but the least physiological activity was shown by the site rehabilitated in 1987 indicating long-term perturbation to this ecosystem. Small subunit ribosomal DNA (SSUrDNA)-denaturing gradient-gel electrophoresis analyses on the microbiota collected from the most preferred CLPP substrates followed by taxonomic analyses showed Proteobacteria, specifically the gamma-proteobacteria, as the most functionally active phyla, indicating a propensity of this phyla to out-compete other groups under the prevailing conditions. Additionally, multivariate statistical analyses, Shannon's diversity, and evenness indices, principal component analysis, biplot and un-weighted-pair-group method with arithmetic averages dendrograms further confirmed that un-mined sites were distinctly different from the rehabilitated soils.

journal_name

Microb Ecol

journal_title

Microbial ecology

authors

Lewis DE,White JR,Wafula D,Athar R,Dickerson T,Williams HN,Chauhan A

doi

10.1007/s00248-009-9621-x

subject

Has Abstract

pub_date

2010-05-01 00:00:00

pages

710-23

issue

4

eissn

0095-3628

issn

1432-184X

journal_volume

59

pub_type

杂志文章
  • The establishment of an intestinal microflora in developing goldfish (Carassius auratus) of culture ponds.

    abstract::The bacterial flora in the intestinal tract of goldfish (Carassius auratus) was investigated at different stages of fish development. The floras of the diets and the water and sediment of a culture pond were also analyzed. The total counts in the intestine ranged from 2.2 × 10(6)-2.1 × 10(8) cells g(-1) wet weight.Aer...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02012646

    authors: Sugita H,Tsunohara M,Ohkoshi T,Deguchi Y

    更新日期:1988-05-01 00:00:00

  • Molecular detection of murine herpesvirus 68 in ticks feeding on free-living reptiles.

    abstract::The MHV-68 (designed as Murid herpesvirus 4 (MuHV 4) strain 68) isolated from two rodents, Myodes glareolus and Apodemus flavicollis, is considered as a natural pathogen of free-living murid rodents. Recently, the detection of MHV antibodies in the blood of animals living in the same biotope as MHV-infected mice has s...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-011-9907-7

    authors: Ficová M,Betáková T,Pančík P,Václav R,Prokop P,Halásová Z,Kúdelová M

    更新日期:2011-11-01 00:00:00

  • Sediment Microbial Diversity of Three Deep-Sea Hydrothermal Vents Southwest of the Azores.

    abstract::Menez Gwen, Lucky Strike and Rainbow are the three most visited and well-known deep-sea hydrothermal vent fields in the Azores region, located in the Mid-Atlantic Ridge. Their distinct geological and ecological features allow them to support a diversity of vent communities, which are largely dependent on Bacteria and ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-017-0943-9

    authors: Cerqueira T,Pinho D,Froufe H,Santos RS,Bettencourt R,Egas C

    更新日期:2017-08-01 00:00:00

  • Frankia and Alnus rubra canopy roots: an assessment of genetic diversity, propagule availability, and effects on soil nitrogen.

    abstract::The ecological importance of microbial symbioses in terrestrial soils is widely recognized, but their role in soils that accumulate in forest canopies is almost entirely unknown. To address this gap, this study investigated the Frankia-Alnus rubra symbiosis in canopy and forest floor roots at Olympic National Park, WA...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-009-9587-8

    authors: Kennedy PG,Schouboe JL,Rogers RH,Weber MG,Nadkarni NM

    更新日期:2010-02-01 00:00:00

  • The ecology of the yeast flora in necroticOpuntia cacti and of associatedDrosophila in Australia.

    abstract::A survey was made of the yeast communities isolated from necrotic tissue of 4 species of prickly-pear cacti (Opuntia stricta, O. tomentosa, O. monacantha, andO. streptacantha) which have colonized in Australia. Yeast communities were sampled from a number of localities and at different times. Cactus specific yeasts ac...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02015562

    authors: Barker JS,East PD,Phaff HJ,Miranda M

    更新日期:1984-12-01 00:00:00

  • Immunofluorescence detection of the denitrifying strain Pseudomonas stutzeri (ATCC 14405) in seawater and intertidal sediment environments.

    abstract::A strain-specific immunofluorescence assay for enumeration of a marine denitrifying bacterium was developed and applied in the marine environment. The polyclonal antiserum for Pseudomonas stutzeri (ATCC 14405) did not react with other pseudomonads, other heterotrophs, or autotrophic nitrifying strains. The abundance o...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF00171890

    authors: Ward BB,Cockcroft AR

    更新日期:1993-05-01 00:00:00

  • Vector affinity and diversity of Geosmithia fungi living on subcortical insects inhabiting Pinaceae species in central and northeastern Europe.

    abstract::Fungi from the genus Geosmithia (Ascomycota: Hypocreales) are associated with bark beetles (Coleoptera: Scolytinae), though little is known about ecology, diversity, and distribution of these fungi across beetle and its host tree species. This study surveyed the diversity, distribution and vector affinity of Geosmithi...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-013-0228-x

    authors: Kolařík M,Jankowiak R

    更新日期:2013-10-01 00:00:00

  • Seasonal Variability May Affect Microbial Decomposers and Leaf Decomposition More Than Warming in Streams.

    abstract::Ongoing climate change is expected to affect the diversity and activity of aquatic microbes, which play a key role in plant litter decomposition in forest streams. We used a before-after control-impact (BACI) design to study the effects of warming on a forest stream reach. The stream reach was divided by a longitudina...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-016-0780-2

    authors: Duarte S,Cássio F,Ferreira V,Canhoto C,Pascoal C

    更新日期:2016-08-01 00:00:00

  • Fate of Pseudomonas putida after release into lake water mesocosms: Different survival mechanisms in response to environmental conditions.

    abstract::To study the fate of Pseudomonas putida DSM 3931 in an aquatic environment, cultures of the strain were released into lake water mesocosms. P. putida, bearing the TOL-plasmid, was released as a representative xenobiotic-degrading microorganism. The release was carried out in mesocosms with unamended lake water and in ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF00165812

    authors: Brettar I,Ramos-Gonzalez MI,Ramos JL,Höfle MG

    更新日期:1994-01-01 00:00:00

  • An improved sequence-aided T-RFLP analysis of bacterial succession during oyster mushroom substrate preparation.

    abstract::While oyster mushroom (Pleurotus spp.) is one of the most popular cultivated edible mushrooms, there is scanty information about the microbial community taking part in mushroom substrate production. In this study, an improved sequence-aided terminal restriction fragment length polymorphism (T-RFLP) was used to identif...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-012-0063-5

    authors: Vajna B,Szili D,Nagy A,Márialigeti K

    更新日期:2012-10-01 00:00:00

  • Laboratory-induced endolithic growth in calcarenites: biodeteriorating potential assessment.

    abstract::This study is aimed to assess the formation of photosynthetic biofilms on and within different natural stone materials, and to analyse their biogeophysical and biogeochemical deterioration potential. This was performed by means of artificial colonisation under laboratory conditions during 3 months. Monitoring of micro...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-010-9666-x

    authors: Miller AZ,Rogerio-Candelera MA,Laiz L,Wierzchos J,Ascaso C,Sequeira Braga MA,Hernández-Mariné M,Maurício A,Dionísio A,Macedo MF,Saiz-Jimenez C

    更新日期:2010-07-01 00:00:00

  • Bacterial community structure of sediments of the bizerte lagoon (Tunisia), a southern Mediterranean coastal anthropized lagoon.

    abstract::In order to estimate how pollution affects the bacterial community structure and composition of sediments, chemical and molecular approaches were combined to investigate eight stations around the Bizerte lagoon. Terminal restriction fragment length polymorphism (T-RFLP) analysis of PCR-amplified 16S rRNA genes reveale...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-009-9585-x

    authors: Ben Said O,Goñi-Urriza M,El Bour M,Aissa P,Duran R

    更新日期:2010-04-01 00:00:00

  • Supratidal Extremophiles--Cyanobacterial Diversity in the Rock Pools of the Croatian Adria.

    abstract::Hardly any molecular studies have been done on euendoliths of marine coastal environments, especially along the supratidal ranges of carbonate coasts. In our study, we provide a comparative sequence analysis using 454 pyrosequencing of the 16S ribosomal RNA (rRNA) gene combined with extensive microscopy of the endolit...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-015-0637-0

    authors: Brandes M,Albach DC,Vogt JC,Mayland-Quellhorst E,Mendieta-Leiva G,Golubic S,Palinska KA

    更新日期:2015-11-01 00:00:00

  • Habitat Fragmentation can Modulate Drought Effects on the Plant-soil-microbial System in Mediterranean Holm Oak (Quercus ilex) Forests.

    abstract::Ecological transformations derived from habitat fragmentation have led to increased threats to above-ground biodiversity. However, the impacts of forest fragmentation on soils and their microbial communities are not well understood. We examined the effects of contrasting fragment sizes on the structure and functioning...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-015-0584-9

    authors: Flores-Rentería D,Curiel Yuste J,Rincón A,Brearley FQ,García-Gil JC,Valladares F

    更新日期:2015-05-01 00:00:00

  • Effects of temperature and salinity on survival of toxigenicVibrio cholerae O1 in seawater.

    abstract::In 1991 and 1992, the Latin American epidemic strain of Vibrio cholerae O1 was isolated from ballast water, bilge water, and sewage taken from cargo ships docked in Mobile Bay, Alabama. The findings raised questions regarding the organism's ability to survive long-term aboard ships and to withstand the exchange of bal...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF00167862

    authors: McCarthy SA

    更新日期:1996-03-01 00:00:00

  • Microbiota Diversity Within and Between the Tissues of Two Wild Interbreeding Species.

    abstract::Understanding the role of microbiota as reproductive barriers or sources of adaptive novelty in the fundamental biological phenomenon of speciation is an exciting new challenge necessitating exploration of microbiota variation in wild interbreeding species. We focused on two interbreeding cyprinid species, Chondrostom...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-017-1077-9

    authors: Guivier E,Martin JF,Pech N,Ungaro A,Chappaz R,Gilles A

    更新日期:2018-04-01 00:00:00

  • Effects of whole-tree harvest on epilithic bacterial populations in headwater streams.

    abstract::Bacteria attached to rock and glass surfaces were studied in streams draining a whole-tree harvested watershed (WTH) and a nonharvested (CONTROL) watershed in the Hubbard Brook Experimental Forest, New Hampshire, U.S.A. Seasonal trends in numbers of cells/cm(2), mean cell volume, cell size-frequency distribution, and ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02018912

    authors: Haack SK,Burton T,Ulrich K

    更新日期:1988-09-01 00:00:00

  • Microscopic examination of bacteria in Fe(III)-oxide deposited from ground water.

    abstract::Ochreous sludge deposited in the course of aeration of ground water contained an assortment of bacterial forms and structures which were investigated by light microscopy, scanning electron microscopy, and transmission electron microscopy. Bacterial structures were often covered by iron deposition which could be remove...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02010579

    authors: Tuovinen OH,Nurmiaho EL

    更新日期:1979-03-01 00:00:00

  • Interactions of Botryococcus braunii cultures with bacterial biofilms.

    abstract::Unicellular microalgae generally grow in the presence of bacteria, particularly when they are farmed massively. This study analyzes the bacteria associated with mass culture of Botryococcus braunii: both the planktonic bacteria in the water column and those forming biofilms adhered to the surface of the microalgal cel...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-010-9686-6

    authors: Rivas MO,Vargas P,Riquelme CE

    更新日期:2010-10-01 00:00:00

  • Anomalies in the enumeration of starved bacteria on culture media containing nalidic acid and tetracycline.

    abstract::Culturable counts of antibiotic resistant, genetically engineeredPseudomonas fluorescens were determined on antibiotic-containing plate count agar during starvation in water. Prior to starvation, colony counts obtained on all media separated into two groups. The mean of the colony counts on plate count agar with or wi...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02543883

    authors: Genthner FJ,Upadhyay J,Campbell RP,Genthner BR

    更新日期:1990-12-01 00:00:00

  • Effect of freeze-thaw cycles on bacterial communities of arctic tundra soil.

    abstract::The effect of freeze-thaw (FT) cycles on Arctic tundra soil bacterial community was studied in laboratory microcosms. FT-induced changes to the bacterial community were followed over a 60-day period by terminal restriction fragment length polymorphism (T-RFLP) profiles of amplified 16S rRNA genes and reverse transcrib...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-009-9516-x

    authors: Männistö MK,Tiirola M,Häggblom MM

    更新日期:2009-10-01 00:00:00

  • Multiple, novel biologically active endophytic actinomycetes isolated from upper Amazonian rainforests.

    abstract::Microbial biodiversity provides an increasingly important source of medically and industrially useful compounds. We have isolated 14 actinomycete species from a collection of approximately 300 plant stem samples from the upper Amazonian rainforest in Peru. All of the cultured isolates produce substances with inhibitor...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-009-9494-z

    authors: Bascom-Slack CA,Ma C,Moore E,Babbs B,Fenn K,Greene JS,Hann BD,Keehner J,Kelley-Swift EG,Kembaiyan V,Lee SJ,Li P,Light DY,Lin EH,Schorn MA,Vekhter D,Boulanger LA,Hess WM,Vargas PN,Strobel GA,Strobel SA

    更新日期:2009-08-01 00:00:00

  • Basidiomycetous yeasts from boletales fruiting bodies and their interactions with the mycoparasite Sepedonium chrysospermum and the host fungus Paxillus.

    abstract::Interactions between mushrooms, yeasts, and parasitic fungi are probably common in nature, but are rarely described. Bolete fruiting bodies are associated with a broad spectrum of microorganisms including yeasts, and they are commonly infected with filamentous mycoparasites of the genus Sepedonium (teleomorph Hypomyce...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-011-9923-7

    authors: Yurkov A,Krüger D,Begerow D,Arnold N,Tarkka MT

    更新日期:2012-02-01 00:00:00

  • Fermentation Ability of Gut Microbiota of Wild Japanese Macaques in the Highland and Lowland Yakushima: In Vitro Fermentation Assay and Genetic Analyses.

    abstract::Wild Japanese macaques (Macaca fuscata Blyth) living in the highland and lowland areas of Yakushima are known to have different diets, with highland individuals consuming more leaves. We aim to clarify whether and how these differences in diet are also reflected by gut microbial composition and fermentation ability. T...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-020-01515-8

    authors: Hanya G,Tackmann J,Sawada A,Lee W,Pokharel SS,de Castro Maciel VG,Toge A,Kuroki K,Otsuka R,Mabuchi R,Liu J,Hatakeyama M,Yamasaki E,von Mering C,Shimizu-Inatsugi R,Hayakawa T,Shimizu KK,Ushida K

    更新日期:2020-08-01 00:00:00

  • Environment-related adaptive changes of gut commensal microbiota do not alter colonic toll-like receptors but modulate the local expression of sensory-related systems in rats.

    abstract::Pathogenic and protective roles have been attributed to gut commensal microbiota (GCM) in gastrointestinal inflammatory and functional disorders. We have shown that the adaptation to a new environment implies specific changes in the composition of GCM. Here we assessed if environment-related adaptive changes of GCM mo...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-013-0241-0

    authors: Aguilera M,Vergara P,Martínez V

    更新日期:2013-07-01 00:00:00

  • Influence of zinc, lead, and cadmium pollutants on the microflora of hawthorn leaves.

    abstract::Transect studies were conducted to determine the relative effects of zinc, lead, and cadmium pollution on microorganisms occurring on hawthorn leaves at varying distances from a smelting complex.Sporobolomyces roseus was absent from the most heavily contaminated leaves but, although lead was inhibitory, other environm...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02010388

    authors: Bewley RJ,Campbell R

    更新日期:1980-09-01 00:00:00

  • Community structure and function of planktonic Crenarchaeota: changes with depth in the South China Sea.

    abstract::Marine Crenarchaeota represent a widespread and abundant microbial group in marine ecosystems. Here, we investigated the abundance, diversity, and distribution of planktonic Crenarchaeota in the epi-, meso-, and bathypelagic zones at three stations in the South China Sea (SCS) by analysis of crenarchaeal 16S rRNA gene...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-011-9866-z

    authors: Hu A,Jiao N,Zhang CL

    更新日期:2011-10-01 00:00:00

  • Control of Hydraulic Load on Bacterioplankton Diversity in Cascade Hydropower Reservoirs, Southwest China.

    abstract::Hydroelectric reservoirs are highly regulated ecosystems, where the understanding on bacterioplankton has been very limited so far. In view of significant changes in river hydrological conditions by dam construction, hydraulic load (i.e., the ratio of mean water depth to water retention time) was assumed to control ba...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-020-01523-8

    authors: Yang M,Shi J,Wang B,Xiao J,Li W,Liu CQ

    更新日期:2020-10-01 00:00:00

  • Response of microbial populations to environmental disturbance.

    abstract::Taxonomic and genetic diversities of microbial communities disturbed by chemical pollutants were lower than in undisturbed reference communities. The dominant populations within the disturbed communities had enhanced physiological tolerances and substrate utilization capabilities, indicating that generalized physiolog...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02540227

    authors: Atlas RM,Horowitz A,Krichevsky M,Bej AK

    更新日期:1991-12-01 00:00:00

  • Complexity of semiarid gypsophilous shrub communities mediates the AMF biodiversity at the plant species level.

    abstract::The community composition of arbuscular mycorrhizal fungi (AMF) was analyzed in roots of Gypsophila struthium growing in gypsum soils under semiarid conditions. In order to investigate the effect of plant community degradation on the AMF biodiversity at the single species level, on the basis of the plant community com...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-008-9438-z

    authors: Alguacil MM,Roldán A,Torres MP

    更新日期:2009-05-01 00:00:00