Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line.

Abstract:

:We have identified new genomic alterations in the breast cancer cell line HCC1954, using high-throughput transcriptome sequencing. With 120 Mb of cDNA sequences, we were able to identify genomic rearrangement events leading to fusions or truncations of genes including MRE11 and NSD1, genes already implicated in oncogenesis, and 7 rearrangements involving other additional genes. This approach demonstrates that high-throughput transcriptome sequencing is an effective strategy for the characterization of genomic rearrangements in cancers.

authors

Zhao Q,Caballero OL,Levy S,Stevenson BJ,Iseli C,de Souza SJ,Galante PA,Busam D,Leversha MA,Chadalavada K,Rogers YH,Venter JC,Simpson AJ,Strausberg RL

doi

10.1073/pnas.0812945106

subject

Has Abstract

pub_date

2009-02-10 00:00:00

pages

1886-91

issue

6

eissn

0027-8424

issn

1091-6490

pii

0812945106

journal_volume

106

pub_type

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